Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold392G50669 scaffold392 + View
SGA_v2.0_scaffold112G31675 scaffold112 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Actinidia chinensis Actinidia07954 Lachesis_group0 - View
Actinidia chinensis Actinidia37785 Lachesis_group5 + View
Arabidopsis lyrata AL3G23490 scaffold_3 - View
Avicennia marina MSTRG.19335 ScioBoG_25048_HRSCAF_25167 + View
Avicennia marina MSTRG.5920 ScioBoG_102839_HRSCAF_103093 - View
Arabidopsis thaliana AT3G11910 ubiquitin-specific protease 13 ubiquitin-specific protease 13 (UBP13)%3B FUNCTIONS IN: ubiquitin-specific protease activity%2C ubiquitin thiolesterase activity%3B INVOLVED IN: ubiquitin-dependent protein catabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974)%2C Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (InterPro:IPR018200)%2C MATH (InterPro:IPR002083)%2C Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394)%2C TRAF-type (InterPro:IPR013322)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.1)%3B Has 7915 Blast hits to 7124 proteins in 272 species: Archae - 0%3B Bacteria - 15%3B Metazoa - 3654%3B Fungi - 1255%3B Plants - 1604%3B Viruses - 7%3B Other Eukaryotes - 1380 (source: NCBI BLink). ubiquitin-specific protease 13 (UBP13)%3B FUNCTIONS IN: ubiquitin-specific protease activity%2C ubiquitin thiolesterase activity%3B INVOLVED IN: ubiquitin-dependent protein catabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974)%2C Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (InterPro:IPR018200)%2C MATH (InterPro:IPR002083)%2C Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394)%2C TRAF-type (InterPro:IPR013322)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.2). Chr3 - View
Amborella trichopoda ATR0697G188 AmTr_v1.0_scaffold00004 + View
Brassica carinata BcaC09g48189 ChrC09 + View
Brassica carinata BcaB01g05996 ChrB01 - View
Brassica napus C03p03190 C03 - View
Brassica napus A03p02770 A03 - View
Brassica oleracea BolC3t12864H C3 - View
Brassica oleracea BolC1t05283H C1 + View
Brassica rapa BraA03t09640Z A03 - View
Brassica rapa BraA01t04154Z A01 + View
Beta vulgaris EL10Ac5g11785 K11838 - ubiquitin carboxyl-terminal hydrolase 7 (USP7, UBP15) Chr5_EL10_PGA_scaffold2 + View
Camellia sinensis var. sinensis CSS0030255 PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X2 [Vitis vinifera] Chr13 - View
Coffea canephora Cc06_g07080 Ubiquitin carboxyl-terminal hydrolase 12 chr6 - View
Ceratophyllum demersum CDE07G0993 5 + View
Cardamine hirsuta CARHR206600 Ubiquitin carboxyl-terminal hydrolase 13 Chr6 + View
Cardamine hirsuta CARHR086440 Ubiquitin carboxyl-terminal hydrolase 13 Chr3 - View
Chenopodium quinoa AUR62001586 UBP12: Ubiquitin carboxyl-terminal hydrolase 12 C_Quinoa_Scaffold_2716 + View
Chenopodium quinoa AUR62036297 UBP13: Ubiquitin carboxyl-terminal hydrolase 13 C_Quinoa_Scaffold_2738 + View
Cucumis sativus L. CsaV3_3G038420 Ubiquitin carboxyl-terminal hydrolase, putative chr3 - View
Daucus carota DCAR_016904 hypothetical protein DCARv2_Chr5 + View
Daucus carota DCAR_020675 hypothetical protein DCARv2_Chr6 - View
Daucus carota DCAR_013468 hypothetical protein DCARv2_Chr4 + View
Davidia involucrata Dinv11911 GWHABJS00000021 + View
Davidia involucrata Dinv25089 GWHABJS00000015 + View
Durio zibethinus Duzib150G0607 NW_019167882.1 - View
Durio zibethinus Duzib168G0467 NW_019168159.1 - View
Durio zibethinus Duzib170G0279 NW_019167871.1 + View
Erigeron canadensis ECA248G1226 Conyza_canadensis_scaffold:9 - View
Erigeron canadensis ECA238G1980 Conyza_canadensis_scaffold:6 - View
Erythranthe guttata Migut.L01858 scaffold_12 - View
Erythranthe guttata Migut.J00749 scaffold_10 - View
Eutrema salsugineum Thhalv10019920m.g scaffold_13 + View
Eutrema salsugineum Thhalv10012503m.g scaffold_2 - View
Fragaria x ananassa FAN11G0531 K11838 - ubiquitin carboxyl-terminal hydrolase 7 (USP7, UBP15) Fvb3-4 + View
Fragaria x ananassa FAN25G0247 K11838 - ubiquitin carboxyl-terminal hydrolase 7 (USP7, UBP15) Fvb3-1 + View
Fragaria x ananassa FAN16G2930 K11838 - ubiquitin carboxyl-terminal hydrolase 7 (USP7, UBP15) Fvb3-3 - View
Fragaria vesca FvH4_3g26930 K11838 - ubiquitin carboxyl-terminal hydrolase 7 (USP7, UBP15) Fvb3 - View
Gossypium hirsutum Gohir.D07G118100 K11838 - ubiquitin carboxyl-terminal hydrolase 7 (USP7, UBP15) D07 - View
Gossypium hirsutum Gohir.A05G077000 K11838 - ubiquitin carboxyl-terminal hydrolase 7 (USP7, UBP15) A05 + View
Gossypium raimondii Gorai.001G127100 Chr01 - View
Helianthus annuus HanXRQChr14g0453171 Putative TRAF-like; Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain; Ubiquitin specific protease domain; Ubiquitin carboxyl-terminal hydrolase, C-terminal HanXRQChr14 + View
Lupinus albus Lalb_Chr02g0154001 PF00917 - MATH domain (MATH) Lalb_Chr02 - View
Lonicera japonica Lj1A1060G23 GWHAAZE00000001 - View
Lactuca sativa Lsat_1_v5_gn_2_102201 Lsat_1_v8_lg_2 - View
Magnolia biondii MBI11_g24569_MAGBIO AED:0.15 Chr11 - View
Olea europaea Oeu045010.1 chr9 + View
Olea europaea Oeu020199.5 scaffold187 - View
Oryza sativa ssp. japonica Os01g0771400 Similar to CM0545.290.nc protein. chr01 - View
Punica granatum PGR142G0830 NC_045128.1 - View
Pisum sativum Psat3g088200 ICP0-binding domain of Ubiquitin-specific protease 7 chr3LG5 - View
Papaver somniferum PSO339G4760 NC_039366.1 + View
Quercus lobata QL01p018861 1 + View
Rosa chinensis RcHm_v2.0_Chr5g0049371 RcHm_v2.0_Chr5 - View
Sechium edule Sed0024884 LG12 + View
Solanum lycopersicum Solyc06g073820.3 Ubiquitin carboxyl-terminal hydrolase 12 (AHRD V3.3 *** A0A2G2XWY4_CAPAN) SL4.0ch06 + View
Solanum pennellii Sopen06g030220 ubiquitin-specific protease 13 (UBP13) | FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity | INVOLVED IN: ubiquitin-dependent protein catabolic process | LOCATED IN: cellular_component unknown | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: TRAF-like , Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site , MATH , Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 , TRAF-type | BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 ., Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 Spenn-ch06 + View
Trochodendron aralioides TAR623G0805 group7 + View
Utricularia gibba unitig_749.g14213 unitig_749 + View
Vitis vinifera GSVIVG01022498001 chr8 + View