Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Arabidopsis lyrata AL6G20330 scaffold_6 + View
Arabidopsis lyrata AL8G42280 scaffold_8 + View
Avicennia marina MSTRG.23310 ScioBoG_3895_HRSCAF_3912 + View
Avicennia marina MSTRG.2526 ScioBoG_102835_HRSCAF_103059 + View
Aquilegia oxysepala Aqoxy6G00452 CHR06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.QW6G0A K07933 - Rab-like protein 3 (RABL3) arahy.Tifrunner.gnm1.Arahy.10 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.N9CCL6 K07933 - Rab-like protein 3 (RABL3) arahy.Tifrunner.gnm1.Arahy.03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.IW8T8H K07933 - Rab-like protein 3 (RABL3) arahy.Tifrunner.gnm1.Arahy.13 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.8U6WSJ K07933 - Rab-like protein 3 (RABL3) arahy.Tifrunner.gnm1.Arahy.20 + View
Arabidopsis thaliana AT5G64813 Ras-related small GTP-binding family protein The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants%2C LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock%2C especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter%2C shows a low amplitude variation%2C with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings%2C a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus%2C and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis. Light Insensitive Period1 (LIP1)%3B FUNCTIONS IN: GTPase activity%3B INVOLVED IN: circadian regulation of gene expression%2C photomorphogenesis%3B LOCATED IN: nucleus%2C cytoplasm%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C RNA polymerase sigma factor 54%2C interaction (InterPro:IPR002078)%3B BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT5G09910.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 + View
Arabidopsis thaliana AT5G09910 Ras-related small GTP-binding family protein Ras-related small GTP-binding family protein%3B FUNCTIONS IN: GTP binding%2C transcription factor binding%2C ATP binding%3B INVOLVED IN: protein transport%2C small GTPase mediated signal transduction%2C regulation of transcription%2C DNA-dependent%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%2C Small GTPase%2C Rho type (InterPro:IPR003578)%2C RNA polymerase sigma factor 54%2C interaction (InterPro:IPR002078)%3B BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT5G64813.1)%3B Has 12883 Blast hits to 12880 proteins in 413 species: Archae - 2%3B Bacteria - 26%3B Metazoa - 6232%3B Fungi - 1455%3B Plants - 1908%3B Viruses - 3%3B Other Eukaryotes - 3257 (source: NCBI BLink). Chr5 + View
Brassica carinata BcaB02g09831 ChrB02 + View
Brassica carinata BcaC04g23277 ChrC04 - View
Brassica carinata BcaB04g19996 ChrB04 + View
Brassica napus A09p08860 A09 + View
Brassica oleracea BolC9t53928H C9 + View
Brassica rapa BraA09t36537Z A09 + View
Beta vulgaris EL10Ac6g14771 K07933 - Rab-like protein 3 (RABL3) Chr6_EL10_PGA_scaffold0 - View
Cannabis sativa CANSAT01G1092 NC_044373.1 + View
Cicer arietinum L. Ca_17692_v3 Ca_LG6_v3 + View
Corylus avellana Haze_25055 Similar to LIP1: Small GTPase LIP1 (Arabidopsis thaliana OX%3D3702) 8 - View
Carpinus fangiana Cfa002764 Cfa01 - View
Cardamine hirsuta CARHR278810 Ras-related rab-4, putative Chr8 + View
Cardamine hirsuta CARHR203420 Ras-related small GTP-binding family protein Chr6 - View
Carya illinoinensis CiPaw.04G091000 K07933 - Rab-like protein 3 (RABL3) Chr04 + View
Carya illinoinensis CiPaw.03G133600 KOG0394 - Ras-related GTPase Chr03 + View
Citrullus lanatus ClCG02G000980 RAB, member of RAS oncogene family-like 3 CG_Chr02 + View
Cucumis melo MELO3C020962.2 GTP-binding protein yptv3, putative chr11 + View
Chenopodium quinoa AUR62003298 At5g64813: Uncharacterized GTP-binding protein At5g64813 C_Quinoa_Scaffold_1000 + View
Capsella rubella Carub.0008s2563 K07933 - Rab-like protein 3 (RABL3) scaffold_8 + View
Capsella rubella Carub.0006s0835 K07933 - Rab-like protein 3 (RABL3) scaffold_6 + View
Cucumis sativus L. CsaV3_2G017700 Ras-related small GTP-binding family protein chr2 - View
Daucus carota DCAR_001376 hypothetical protein DCARv2_Chr1 - View
Davidia involucrata Dinv42682 GWHABJS00000021 - View
Davidia involucrata Dinv19475 GWHABJS00000014 - View
Durio zibethinus Duzib264G0693 NW_019167960.1 + View
Durio zibethinus Duzib187G1335 NW_019167860.1 + View
Durio zibethinus Duzib147G1288 NW_019168470.1 + View
Eucalyptus grandis Eucgr.H04871 Chr08 - View
Erythranthe guttata Migut.H02443 scaffold_8 - View
Eutrema salsugineum Thhalv10004519m.g K07933 - Rab-like protein 3 (RABL3) scaffold_6 - View
Fragaria x ananassa FAN28G2916 K07933 - Rab-like protein 3 (RABL3) Fvb1-1 + View
Gossypium hirsutum Gohir.A11G053900 K07933 - Rab-like protein 3 (RABL3) A11 - View
Gossypium hirsutum Gohir.D11G057400 K07933 - Rab-like protein 3 (RABL3) D11 - View
Gossypium hirsutum Gohir.D11G232000 K07933 - Rab-like protein 3 (RABL3) D11 + View
Gossypium hirsutum Gohir.A11G197500 K07933 - Rab-like protein 3 (RABL3) A11 - View
Glycine max Glyma.08G142300 K07933 - Rab-like protein 3 (RABL3) Gm08 - View
Glycine max Glyma.05G184400 K07933 - Rab-like protein 3 (RABL3) Gm05 - View
Gossypium raimondii Gorai.007G062600 Chr07 - View
Gossypium raimondii Gorai.007G245100 Chr07 - View
Lupinus albus Lalb_Chr12g0203501 K07933 - Rab-like protein 3 (RABL3) Lalb_Chr12 + View
Lupinus albus Lalb_Chr13g0296231 K07933 - Rab-like protein 3 (RABL3) Lalb_Chr13 - View
Lotus japonicus Lj4g0017689 K07933 - Rab-like protein 3 (RABL3) chr4 + View
Lonicera japonica Lj4A864T19 GWHAAZE00000004 + View
Lonicera japonica Lj2C567G4 GWHAAZE00000002 - View
Manihot esculenta Manes.12G143400 Chromosome12 - View
Medicago truncatula Medtr8g091980 Ras-related small GTP-binding family protein chr8 - View
Nelumbo nucifera Nn1g05158 chr1 + View
Nelumbo nucifera Nn5g28875 chr5 + View
Olea europaea Oeu015853.1 scaffold1631 + View
Olea europaea Oeu028366.1 chr18 - View
Petunia axillaris Peaxi162Scf00106g01615 Ras-related small GTP-binding family protein Peaxi162Scf00106 + View
Punica granatum PGR102G1870 NC_045129.1 - View
Pisum sativum Psat7g050920 Ras family chr7LG7 + View
Papaver somniferum PSO210G1492 NC_039359.1 + View
Papaver somniferum PSO170G2871 NC_039360.1 + View
Populus trichocarpa Potri.005G085100 K07933 - Rab-like protein 3 (RABL3) Chr05 - View
Populus trichocarpa Potri.007G080100 K07933 - Rab-like protein 3 (RABL3) Chr07 + View
Phaseolus vulgaris Phvul.002G265300 K07933 - Rab-like protein 3 (RABL3) Chr02 - View
Quercus lobata QL06p031876 6 + View
Rhododendron simsii Rhsim10G0148900 chr10 + View
Rhododendron simsii Rhsim08G0005500 chr08 + View
Salvia bowleyana SalBow6G4125 GWHASIU00000002 - View
Salvia bowleyana SalBow5G1590 GWHASIU00000003 + View
Salix brachista Sabra05G0069900 GWHAAZH00000005 - View
Salix brachista Sabra07G0067200 GWHAAZH00000007 + View
Simmondsia chinensis Sc07g0001570 GWHAASQ00000007 - View
Solanum lycopersicum Solyc04g051700.3 Small GTPase superfamily (AHRD V3.3 *** A0A200QCA8_9MAGN) SL4.0ch04 + View
Schrenkiella parvula Sp6g33500 K07976 - Rab family, other (RAB) ch6-6 - View
Schrenkiella parvula Sp2g27880 K07933 - Rab-like protein 3 (RABL3) ch2-4 + View
Solanum pennellii Sopen04g023080 The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis. | Light Insensitive Period1 (LIP1) | FUNCTIONS IN: GTPase activity | INVOLVED IN: circadian regulation of gene expression, photomorphogenesis | LOCATED IN: nucleus, cytoplasm | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Ras GTPase , Small GTPase , Ras , RNA polymerase sigma factor 54, interaction | BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein Spenn-ch04 + View
Solanum tuberosum PGSC0003DMG402031196 GTP-binding protein yptv3 ST4.03ch04 - View
Trochodendron aralioides TAR381G0083 group11 - View
Trochodendron aralioides TAR628G1042 group5 + View
Trochodendron aralioides TAR625G1069 group4 + View
Theobroma cacao Thecc.01G114600 Ras-related small GTP-binding family protein Chromosome_1 - View
Tarenaya hassleriana THA.LOC104799321 uncharacterized GTP-binding protein At5g64813 NW_010960188.1 - View
Trifolium pratense TPR.G2235 Tp57577_TGAC_v2_LG3 + View
Tripterygium wilfordii TWI79G1778 NC_052238.1 + View
Vaccinium macrocarpon vmacro12895 Similar to LIP1: Small GTPase LIP1 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro18639 Similar to LIP1: Small GTPase LIP1 (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0251G1621 CM024069.1 - View
Vitis vinifera GSVIVG01022244001 chr7 - View