Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold89G27437 scaffold89 - View
SGA_v2.0_scaffold96G29035 scaffold96 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG9G11220 LG-9 + View
Aethionema arabicum Aa31LG1G27880 LG-1 + View
Aethionema arabicum Aa31LG6G7200 LG-6 + View
Arabidopsis lyrata AL4G45950 scaffold_4 + View
Arabidopsis lyrata AL7G29340 scaffold_7 - View
Avicennia marina MSTRG.13892 ScioBoG_18778_HRSCAF_18863 + View
Avicennia marina MSTRG.1798 ScioBoG_102834_HRSCAF_103055 - View
Avicennia marina MSTRG.11906 ScioBoG_17730_HRSCAF_17811 - View
Avicennia marina MSTRG.17353 ScioBoG_19743_HRSCAF_19834 + View
Avicennia marina MSTRG.25693 ScioBoG_4119_HRSCAF_4138 + View
Amaranthus hybridus Ah.07g197570 Auxin response factor 9 AmaHy_arrow1_Scaffold_7 + View
Aquilegia oxysepala Aqoxy7G00065 CHR07 - View
Arabidopsis thaliana AT2G46530 auxin response factor 11 auxin response factor 11 (ARF11)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to hormone stimulus%2C regulation of transcription%2C DNA-dependent%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C Transcriptional factor B3 (InterPro:IPR003340)%2C AUX/IAA protein (InterPro:IPR003311)%2C Auxin response factor (InterPro:IPR010525)%3B BEST Arabidopsis thaliana protein match is: auxin response factor 18 (TAIR:AT3G61830.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr2 + View
Arabidopsis thaliana AT4G23980 auxin response factor 9 Encodes auxin response factor 9 (ARF9). auxin response factor 9 (ARF9)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C Transcriptional factor B3 (InterPro:IPR003340)%2C AUX/IAA protein (InterPro:IPR003311)%2C Auxin response factor (InterPro:IPR010525)%3B BEST Arabidopsis thaliana protein match is: auxin response factor 11 (TAIR:AT2G46530.1)%3B Has 2797 Blast hits to 2432 proteins in 108 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 49%3B Fungi - 2%3B Plants - 2739%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink). Chr4 + View
Amborella trichopoda ATR0602G278 AmTr_v1.0_scaffold00021 + View
Brassica carinata BcaB01g03205 ChrB01 - View
Brassica carinata BcaC01g05060 ChrC01 - View
Brassica carinata BcaC09g50926 ChrC09 - View
Brassica carinata BcaNung01103 Contig456 + View
Brassica napus A01p15260 A01 + View
Brassica napus A05p01250 A05 - View
Brassica napus C01p19190 C01 + View
Brassica napus A03p54880 A03 + View
Brassica napus C07p53270 C07 + View
Brassica oleracea BolC1t01845H C1 + View
Brassica oleracea BolC7t45821H C7 + View
Brassica rapa BraA01t01466Z A01 + View
Brassica rapa BraA03t14554Z A03 + View
Beta vulgaris EL10Ac1g00250 PTHR31384//PTHR31384:SF17 - FAMILY NOT NAMED // AUXIN RESPONSE FACTOR 11-RELATED Chr1_EL10_PGA_scaffold3 - View
Beta vulgaris EL10Ac5g12944 PTHR31384:SF1 - AUXIN RESPONSE FACTOR 12-RELATED Chr5_EL10_PGA_scaffold2 + View
Capsicum annuum CAN.G792.34 PGAv.1.6.scaffold792 - View
Coffea canephora Cc08_g16330 Auxin response factor 9 chr8 + View
Citrus clementina Ciclev10019131m.g scaffold_3 - View
Carpinus fangiana Cfa011976 Cfa05 - View
Cardamine hirsuta CARHR141860 auxin response factor 11 Chr4 + View
Cardamine hirsuta CARHR231380 auxin response factor 9 Chr7 + View
Carya illinoinensis CiPaw.11G118400 PTHR31384//PTHR31384:SF1 - FAMILY NOT NAMED // AUXIN RESPONSE FACTOR 12-RELATED Chr11 - View
Carya illinoinensis CiPaw.12G081000 PTHR31384:SF1 - AUXIN RESPONSE FACTOR 12-RELATED Chr12 - View
Citrullus lanatus ClCG07G011440 auxin response factor 15 LENGTH=598 CG_Chr07 - View
Cucumis melo MELO3C005761.2 Auxin response factor chr09 - View
Cucumis melo MELO3C016272.2 Auxin response factor chr07 - View
Chenopodium quinoa AUR62023447 ARF18: Auxin response factor 18 C_Quinoa_Scaffold_1606 - View
Chenopodium quinoa AUR62019870 ARF9: Auxin response factor 9 C_Quinoa_Scaffold_1480 + View
Chenopodium quinoa AUR62010868 ARF9: Auxin response factor 9 C_Quinoa_Scaffold_1280 + View
Capsella rubella Carub.0007s1711 PTHR31384:SF1 - AUXIN RESPONSE FACTOR 12-RELATED scaffold_7 - View
Capsella rubella Carub.0005s2857 PTHR31384:SF17 - AUXIN RESPONSE FACTOR 11-RELATED scaffold_5 + View
Capsella rubella Carub.0004s2924 PTHR31384:SF17 - AUXIN RESPONSE FACTOR 11-RELATED scaffold_4 + View
Cucumis sativus L. CsaV3_4G006770 Auxin response factor chr4 + View
Cucumis sativus L. CsaV3_5G001910 Auxin response factor chr5 + View
Daucus carota DCAR_025262 hypothetical protein DCARv2_Chr7 + View
Davidia involucrata Dinv38816 GWHABJS00000003 - View
Davidia involucrata Dinv37506 GWHABJS00000017 - View
Davidia involucrata Dinv32602 GWHABJS00000020 + View
Durio zibethinus Duzib084G1181 NW_019167827.1 + View
Durio zibethinus Duzib068G0078 NW_019167838.1 + View
Durio zibethinus Duzib138G1864 NW_019167893.1 + View
Durio zibethinus Duzib205G0386 NW_019168381.1 + View
Erigeron canadensis ECA233G3790 Conyza_canadensis_scaffold:1 - View
Erigeron canadensis ECA240G0445 Conyza_canadensis_scaffold:5 + View
Erigeron canadensis ECA246G3982 Conyza_canadensis_scaffold:8 - View
Eucalyptus grandis Eucgr.D01764 Chr04 + View
Eucalyptus grandis Eucgr.E00888 Chr05 + View
Erythranthe guttata Migut.B01886 scaffold_2 + View
Erythranthe guttata Migut.A00611 scaffold_1 - View
Eutrema salsugineum Thhalv10024554m.g PTHR31384:SF1 - AUXIN RESPONSE FACTOR 12-RELATED scaffold_1 - View
Eutrema salsugineum Thhalv10001365m.g PTHR31384:SF17 - AUXIN RESPONSE FACTOR 11-RELATED scaffold_22 + View
Eutrema salsugineum Thhalv10029379m.g K14486 - auxin response factor (K14486, ARF) scaffold_3 + View
Gossypium hirsutum Gohir.D07G142100 PTHR31384:SF17 - AUXIN RESPONSE FACTOR 11-RELATED D07 - View
Gossypium hirsutum Gohir.A11G025500 PTHR31384:SF1 - AUXIN RESPONSE FACTOR 12-RELATED A11 + View
Gossypium hirsutum Gohir.A02G099200 PTHR31384:SF1 - AUXIN RESPONSE FACTOR 12-RELATED A02 - View
Gossypium hirsutum Gohir.D11G102400 PTHR31384:SF17 - AUXIN RESPONSE FACTOR 11-RELATED D11 + View
Gossypium hirsutum Gohir.A12G113000 PTHR31384:SF17 - AUXIN RESPONSE FACTOR 11-RELATED A12 + View
Gossypium hirsutum Gohir.D03G084700 PTHR31384:SF1 - AUXIN RESPONSE FACTOR 12-RELATED D03 + View
Gossypium hirsutum Gohir.D12G116500 PTHR31384:SF17 - AUXIN RESPONSE FACTOR 11-RELATED D12 + View
Glycine max Glyma.03G258300 PTHR31384:SF17 - AUXIN RESPONSE FACTOR 11-RELATED Gm03 + View
Glycine max Glyma.07G054800 PTHR31384:SF17 - AUXIN RESPONSE FACTOR 11-RELATED Gm07 - View
Gossypium raimondii Gorai.003G078000 Chr03 - View
Gossypium raimondii Gorai.007G109500 Chr07 + View
Gossypium raimondii Gorai.008G126200 Chr08 + View
Helianthus annuus HanXRQChr07g0190781 Putative PB1 domain; AUX/IAA protein; Auxin response factor; DNA-binding pseudobarrel domain HanXRQChr07 - View
Helianthus annuus HanXRQChr17g0535011 Putative PB1 domain; AUX/IAA protein; Auxin response factor; DNA-binding pseudobarrel domain HanXRQChr17 + View
Hydrangea macrophylla Hma1.2p1_0440F.1_g153510 Hma1.2p1_0440F.1 + View
Lotus japonicus Lj2g0000362 PF06507 - Auxin response factor (Auxin_resp) chr2 + View
Lonicera japonica Lj2A162T43 GWHAAZE00000002 + View
Lonicera japonica Lj8A205T43 GWHAAZE00000008 - View
Lactuca sativa Lsat_1_v5_gn_3_11900 Lsat_1_v8_lg_3 + View
Lactuca sativa Lsat_1_v5_gn_6_84121 Lsat_1_v8_lg_6 - View
Malus domestica MD14G1131900 auxin response factor 9 Chr14 + View
Malus domestica MD06G1111100 auxin response factor 9 Chr06 + View
Manihot esculenta Manes.02G007600 Chromosome02 - View
Nelumbo nucifera Nn3g18963 chr3 - View
Olea europaea Oeu009977.2 scaffold138 - View
Petunia axillaris Peaxi162Scf00074g00537 auxin response factor 9 Peaxi162Scf00074 - View
Punica granatum PGR031G2958 NC_045127.1 - View
Punica granatum PGR042G1567 NC_045130.1 - View
Prunus persica Prupe.5G123400 PTHR31384:SF1 - AUXIN RESPONSE FACTOR 12-RELATED Pp05 + View
Populus trichocarpa Potri.001G088600 PTHR31384:SF1 - AUXIN RESPONSE FACTOR 12-RELATED Chr01 - View
Populus trichocarpa Potri.003G142100 PTHR31384:SF1 - AUXIN RESPONSE FACTOR 12-RELATED Chr03 + View
Populus trichocarpa Potri.002G172800 PTHR31384:SF17 - AUXIN RESPONSE FACTOR 11-RELATED Chr02 + View
Populus trichocarpa Potri.014G100100 PTHR31384:SF17 - AUXIN RESPONSE FACTOR 11-RELATED Chr14 + View
Phaseolus vulgaris Phvul.006G114300 PTHR31384:SF17 - AUXIN RESPONSE FACTOR 11-RELATED Chr06 + View
Salix brachista Sabra02G0140400 GWHAAZH00000002 - View
Salix brachista Sabra03G0102900 GWHAAZH00000003 + View
Salix brachista Sabra01G0064800 GWHAAZH00000001 - View
Simmondsia chinensis Sc01g0002570 GWHAASQ00000001 - View
Simmondsia chinensis Sc22g0004870 GWHAASQ00000022 - View
Simmondsia chinensis Sc07g0010120 GWHAASQ00000007 + View
Sechium edule Sed0019236 LG01 + View
Sechium edule Sed0020044 LG13 - View
Sechium edule Sed0017121 LG05 + View
Solanum lycopersicum Solyc08g082630.3 Auxin Response Factor 9A SL4.0ch08 + View
Solanum lycopersicum Solyc08g008380.4 Auxin Response Factor 9B SL4.0ch08 + View
Schrenkiella parvula Sp4g28570 PTHR31384//PTHR31384:SF17 - FAMILY NOT NAMED // AUXIN RESPONSE FACTOR 11-RELATED ch4-6 + View
Schrenkiella parvula Sp6g06600 PF02309//PF06507 - AUX/IAA family (AUX_IAA) // Auxin response factor (Auxin_resp) ch6-1 + View
Schrenkiella parvula Sp7g21940 PTHR31384//PTHR31384:SF1 - FAMILY NOT NAMED // AUXIN RESPONSE FACTOR 12-RELATED ch7-4 + View
Solanum pennellii Sopen01g039790 Encodes auxin response factor 9 (ARF9). | auxin response factor 9 (ARF9) | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription, DNA-dependent | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation , Transcriptional factor B3 , AUX/IAA protein , Auxin response factor | BEST Arabidopsis thaliana protein match is: auxin response factor 11 Spenn-ch01 + View
Solanum pennellii Sopen08g030870 Encodes auxin response factor 9 (ARF9). | auxin response factor 9 (ARF9) | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription, DNA-dependent | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation , Transcriptional factor B3 , AUX/IAA protein , Auxin response factor | BEST Arabidopsis thaliana protein match is: auxin response factor 11 Spenn-ch08 + View
Solanum pennellii Sopen08g004260 auxin response factor 18 (ARF18) | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity | INVOLVED IN: response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation , Transcriptional factor B3 , AUX/IAA protein , Auxin response factor | BEST Arabidopsis thaliana protein match is: auxin response factor 11 Spenn-ch08 + View
Solanum tuberosum PGSC0003DMG400012261 Auxin response factor 9 ST4.03ch08 + View
Solanum tuberosum PGSC0003DMG400000118 ARF domain class transcription factor ST4.03ch01 + View
Selenicereus undatus Hund27190 Scaffold_2055 - View
Selenicereus undatus Hund11378 Scaffold_10417 - View
Selenicereus undatus Hund14205 Scaffold_33677 - View
Trochodendron aralioides TAR374G0857 group12 + View
Trochodendron aralioides TAR375G0152 group15 + View
Theobroma cacao Thecc.03G301500 Auxin response factor 9 Chromosome_3 + View
Tarenaya hassleriana THA.LOC104802080 auxin response factor 18-like isoform X1 NW_010970490.1 + View
Tarenaya hassleriana THA.LOC104815147 auxin response factor 9-like isoform X1 NW_010960187.1 + View
Tarenaya hassleriana THA.LOC104813046 auxin response factor 9-like NW_010965372.1 + View
Tripterygium wilfordii TWI60G0313 NC_052246.1 - View
Vitis vinifera GSVIVG01019566001 chr2 + View