Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG11G13880 LG-11 + View
Acer truncatum Atru.chr8.601 chr8 - View
Actinidia chinensis Actinidia36274 Lachesis_group4 + View
Actinidia chinensis Actinidia18093 Lachesis_group11 + View
Arabidopsis lyrata AL2G28040 scaffold_2 - View
Arabidopsis lyrata AL6G26530 scaffold_6 - View
Avicennia marina MSTRG.7722 ScioBoG_102841_HRSCAF_103114 - View
Amaranthus hybridus Ah.16g100900 DNA-directed RNA polymerase 2, chloroplastic/mitochondrial (EC 2.7.7.6) (NsRpoT-B) (T7 bacteriophage-type single subunit RNA polymerase 2) AmaHy_arrow1_Scaffold_16 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.UH3N3K PTHR10102//PTHR10102:SF1//PTHR10102:SF3 - DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL // DNA-DIRECTED RNA POLYMERASE 3, CHLOROPLASTIC // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.04 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.H38YF4 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) arahy.Tifrunner.gnm1.Arahy.14 + View
Arabidopsis thaliana AT5G15700 DNA/RNA polymerases superfamily protein Nucleus encoded plastid RNA polymerase. Localized in mitochondria and chloroplast. DNA/RNA polymerases superfamily protein%3B FUNCTIONS IN: RNA polymerase activity%2C DNA-directed RNA polymerase activity%2C DNA binding%3B INVOLVED IN: transcription%3B LOCATED IN: mitochondrion%2C chloroplast%2C thylakoid membrane%3B EXPRESSED IN: stem%3B CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase%2C bacteriophage type (InterPro:IPR002092)%3B BEST Arabidopsis thaliana protein match is: male gametophyte defective 3 (TAIR:AT1G68990.1)%3B Has 1300 Blast hits to 1280 proteins in 331 species: Archae - 0%3B Bacteria - 39%3B Metazoa - 134%3B Fungi - 224%3B Plants - 203%3B Viruses - 137%3B Other Eukaryotes - 563 (source: NCBI BLink). Chr5 - View
Arabidopsis thaliana AT1G68990 male gametophyte defective 3 MGP3 (male gametophyte-defective 3) belongs to a small family of nuclear-encoded Phage type RNA polymerases (RPOTs) involved in the transcription of mitochondrial genes in Arabidopsis thaliana. Mutation in MGP 3 significantly retarded pollen tube growth and caused defective embryo development. male gametophyte defective 3 (MGP3)%3B FUNCTIONS IN: DNA-directed RNA polymerase activity%2C DNA binding%3B INVOLVED IN: pollen tube growth%2C transcription%2C ovule development%2C embryo development ending in seed dormancy%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase%2C bacteriophage type (InterPro:IPR002092)%3B BEST Arabidopsis thaliana protein match is: DNA/RNA polymerases superfamily protein (TAIR:AT5G15700.1)%3B Has 1300 Blast hits to 1282 proteins in 331 species: Archae - 0%3B Bacteria - 40%3B Metazoa - 135%3B Fungi - 222%3B Plants - 198%3B Viruses - 137%3B Other Eukaryotes - 568 (source: NCBI BLink). Chr1 - View
Amborella trichopoda ATR0691G213 AmTr_v1.0_scaffold00006 + View
Brassica carinata BcaB03g15453 ChrB03 - View
Brassica oleracea BolC9t58982H C9 + View
Beta vulgaris EL10Ac2g04415 PTHR10102//PTHR10102:SF3 - DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL // SUBFAMILY NOT NAMED Chr2_EL10_PGA_scaffold6 - View
Camellia sinensis var. sinensis CSS0008825 PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis vinifera] Chr6 - View
Camellia sinensis var. sinensis CSS0036559 PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial [Vitis vinifera] Chr1 - View
Capsicum annuum CAN.G497.47 PGAv.1.6.scaffold497 - View
Cannabis sativa CANSAT64G1130 NC_044379.1 - View
Cicer arietinum L. Ca_06958_v3 Ca_LG3_v3 + View
Corylus avellana Haze_11847 Similar to RPOT2-TOM: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial (Nicotiana tabacum OX%3D4097) 9 - View
Corylus avellana Haze_14362 Similar to RPOT2: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial (Nicotiana sylvestris OX%3D4096) 5 - View
Coffea canephora Cc07_g04620 DNA-directed RNA polymerase 2, chloroplastic/mitochondrial chr7 + View
Coffea canephora Cc11_g11410 DNA-directed RNA polymerase 1B, mitochondrial chr11 - View
Citrus clementina Ciclev10030633m.g scaffold_4 - View
Citrus clementina Ciclev10010966m.g scaffold_6 + View
Ceratophyllum demersum CDE10G0683 8 - View
Carpinus fangiana Cfa007710 Cfa03 + View
Carpinus fangiana Cfa008833 Cfa03 - View
Cardamine hirsuta CARHR061870 DNA-directed RNA polymerase Chr2 - View
Cardamine hirsuta CARHR197640 DNA-directed RNA polymerase Chr6 + View
Carya illinoinensis CiPaw.05G120400 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) Chr05 - View
Carya illinoinensis CiPaw.03G081500 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) Chr03 - View
Carya illinoinensis CiPaw.04G051200 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) Chr04 - View
Citrullus lanatus ClCG11G005030 DNA-directed RNA polymerase CG_Chr11 + View
Cucumis melo MELO3C022058.2 DNA-directed RNA polymerase chr09 - View
Carica papaya Cpa.g.sc14.251 supercontig_14 + View
Chenopodium quinoa AUR62007849 RPOT1-TOM: DNA-directed RNA polymerase 1B, mitochondrial C_Quinoa_Scaffold_2646 - View
Chenopodium quinoa AUR62023140 RPOT2: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial C_Quinoa_Scaffold_1189 - View
Chenopodium quinoa AUR62009459 RPOT2: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial C_Quinoa_Scaffold_3674 - View
Chenopodium quinoa AUR62003041 RPOT1-TOM: DNA-directed RNA polymerase 1B, mitochondrial C_Quinoa_Scaffold_1000 - View
Capsella rubella Carub.0002s1561 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) scaffold_2 - View
Capsella rubella Carub.0006s1384 PTHR10102//PTHR10102:SF3 - DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL // SUBFAMILY NOT NAMED scaffold_6 - View
Cucumis sativus L. CsaV3_5G038780 DNA-directed RNA polymerase chr5 + View
Davidia involucrata Dinv34000 GWHABJS00000008 - View
Davidia involucrata Dinv34896 GWHABJS00000012 - View
Durio zibethinus Duzib211G0404 NW_019168049.1 + View
Durio zibethinus Duzib251G0827 NW_019167971.1 - View
Erigeron canadensis ECA232G4010 Conyza_canadensis_scaffold:2 + View
Erigeron canadensis ECA233G0091 Conyza_canadensis_scaffold:1 + View
Eucalyptus grandis Eucgr.I02081 Chr09 + View
Erythranthe guttata Migut.K00880 scaffold_11 - View
Erythranthe guttata Migut.L01153 scaffold_12 - View
Eutrema salsugineum Thhalv10018073m.g K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) scaffold_9 + View
Eutrema salsugineum Thhalv10012544m.g K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) scaffold_2 - View
Fragaria x ananassa FAN02G2488 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) Fvb6-4 - View
Fragaria x ananassa FAN17G0249 PTHR10102//PTHR10102:SF3 - DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL // SUBFAMILY NOT NAMED Fvb4-2 + View
Fragaria x ananassa FAN12G0438 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) Fvb4-3 + View
Fragaria x ananassa FAN14G2149 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) Fvb6-1 + View
Fragaria x ananassa FAN07G1444 PTHR10102//PTHR10102:SF3 - DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL // SUBFAMILY NOT NAMED Fvb4-4 + View
Fragaria x ananassa FAN09G4167 PTHR10102//PTHR10102:SF3 - DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL // SUBFAMILY NOT NAMED Fvb6-2 + View
Fragaria x ananassa FAN05G4217 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) Fvb6-3 + View
Fragaria vesca FvH4_6g46120 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) Fvb6 - View
Gossypium hirsutum Gohir.D11G167000 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) D11 + View
Glycine max Glyma.08G253800 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) Gm08 + View
Glycine max Glyma.18G276200 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) Gm18 + View
Gossypium raimondii Gorai.007G178100 Chr07 + View
Helianthus annuus HanXRQChr15g0464881 Probable DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial HanXRQChr15 + View
Helianthus annuus HanXRQChr12g0365111 Probable DNA-directed RNA polymerase 1B, mitochondrial HanXRQChr12 + View
Lupinus albus Lalb_Chr04g0258321 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) Lalb_Chr04 - View
Lotus japonicus Lj1g0020950 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) chr1 - View
Lotus japonicus Lj2g0022135 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) chr2 + View
Lonicera japonica Lj3A1026T87 GWHAAZE00000003 - View
Lonicera japonica Lj4A126G59 GWHAAZE00000004 + View
Lactuca sativa Lsat_1_v5_gn_8_36821 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) Lsat_1_v8_lg_8 + View
Lactuca sativa Lsat_1_v5_gn_4_174081 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) Lsat_1_v8_lg_4 + View
Malus domestica MD13G1055100 male gametophyte defective 3 Chr13 + View
Malus domestica MD17G1067300 DNA/RNA polymerases superfamily protein Chr17 + View
Malus domestica MD09G1076800 DNA/RNA polymerases superfamily protein Chr09 + View
Malus domestica MD16G1054000 male gametophyte defective 3 Chr16 - View
Manihot esculenta Manes.02G061300 Chromosome02 + View
Manihot esculenta Manes.14G091700 Chromosome14 + View
Medicago truncatula Medtr8g065900 DNA-directed RNA polymerase-like protein chr8 - View
Medicago truncatula Medtr7g017440 leguminosin group485 secreted peptide chr7 + View
Nelumbo nucifera Nn4g23568 chr4 + View
Nelumbo nucifera Nn3g17574 chr3 + View
Nicotiana tabacum Nitab4.5_0002978g0170 DNA-directed RNA polymerase, helix hairpin domain, DNA-directed RNA polymerase, phage-type Nitab4.5_0002978 - View
Nicotiana tabacum Nitab4.5_0002171g0130 DNA-directed RNA polymerase, phage-type, DNA-directed RNA polymerase, helix hairpin domain Nitab4.5_0002171 - View
Olea europaea Oeu032835.1 chr18 + View
Olea europaea Oeu062189.1 chr10 + View
Petunia axillaris Peaxi162Scf00188g00930 DNA-directed RNA polymerase 1, mitochondrial Peaxi162Scf00188 - View
Punica granatum PGR102G2723 NC_045129.1 + View
Punica granatum PGR004G0407 NC_045131.1 - View
Prunus persica Prupe.1G295700 Pp01 + View
Prunus persica Prupe.3G247300 Pp03 - View
Populus trichocarpa Potri.017G105801 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) Chr17 + View
Populus trichocarpa Potri.004G111600 PTHR10102//PTHR10102:SF3 - DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL // SUBFAMILY NOT NAMED Chr04 - View
Populus trichocarpa Potri.010G136700 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) Chr10 - View
Populus trichocarpa Potri.008G112800 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) Chr08 + View
Quercus lobata QL03p073174 3 - View
Rosa chinensis RcHm_v2.0_Chr2g0164571 RcHm_v2.0_Chr2 - View
Rosa chinensis RcHm_v2.0_Chr4g0437111 RcHm_v2.0_Chr4 - View
Rhododendron simsii Rhsim10G0060400 chr10 + View
Striga asiatica SGA_v2.0_scaffold16G07836 scaffold16 + View
Salix brachista Sabra10G0105100 GWHAAZH00000010 - View
Salix brachista Sabra17G0088800 GWHAAZH00000017 + View
Salix brachista Sabra04G0072800 GWHAAZH00000004 + View
Simmondsia chinensis Sc04g0007290 GWHAASQ00000004 - View
Simmondsia chinensis Sc10g0000510 GWHAASQ00000010 - View
Sechium edule Sed0000008 LG11 - View
Solanum lycopersicum Solyc05g010660.4 DNA-directed RNA polymerase (AHRD V3.3 *** K4BXN8_SOLLC) SL4.0ch05 - View
Solanum lycopersicum Solyc02g089330.3 DNA-directed RNA polymerase (AHRD V3.3 *-* A0A2G3ABW1_CAPAN) SL4.0ch02 + View
Schrenkiella parvula Sp5g24110 K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] (POLRMT, RPO41) ch5-6 - View
Schrenkiella parvula Sp6g28430 PTHR10102//PTHR10102:SF3 - DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL // SUBFAMILY NOT NAMED ch6-6 + View
Solanum pennellii Sopen05g006460 DNA-directed RNA polymerase 1, mitochondrial precursor (EC 2.7.7.6) (T7 bacteriophage-type single subunit RNA polymerase 1) (NsRpoT-A) - Nicotiana sylvestris (Wood tobacco), MGP3 (male gametophyte-defective 3) belongs to a small family of nuclear-encoded Phage type RNA polymerases (RPOTs) involved in the transcription of mitochondrial genes in Arabidopsis thaliana. Mutation in MGP 3 significantly retarded pollen tube growth and caused defective embryo development. | male gametophyte defective 3 (MGP3) | FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding | INVOLVED IN: pollen tube growth, transcription, ovule development, embryo development ending in seed dormancy | EXPRESSED IN: 18 plant structures | EXPRESSED DURING: 8 growth stages | CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type | BEST Arabidopsis thaliana protein match is: DNA/RNA polymerases superfamily protein ., DNA-directed RNA polymerase, bacteriophage type Spenn-ch05 - View
Solanum pennellii Sopen02g034110 DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor (EC 2.7.7.6) (T7 bacteriophage-type single subunit RNA polymerase 2) (NsRpoT-B) - Nicotiana sylvestris (Wood tobacco), Nucleus encoded plastid RNA polymerase. Localized in mitochondria and chloroplast. | DNA/RNA polymerases superfamily protein | FUNCTIONS IN: RNA polymerase activity, DNA-directed RNA polymerase activity, DNA binding | INVOLVED IN: transcription | LOCATED IN: mitochondrion, chloroplast, thylakoid membrane | EXPRESSED IN: stem | CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type | BEST Arabidopsis thaliana protein match is: male gametophyte defective 3 ., DNA-directed RNA polymerase, bacteriophage type Spenn-ch02 + View
Solanum tuberosum PGSC0003DMG402001383 DNA-directed RNA polymerase 2A ST4.03ch02 - View
Selenicereus undatus Hund16248 Scaffold_33677 + View
Selenicereus undatus Hund05812 Scaffold_19641 - View
Trochodendron aralioides TAR622G1136 group8 - View
Trochodendron aralioides TAR374G0294 group12 + View
Trochodendron aralioides TAR629G1413 group0 - View
Theobroma cacao Thecc.04G109700 Chromosome_4 + View
Theobroma cacao Thecc.02G320400 DNA-directed RNA polymerase Chromosome_2 - View
Trifolium pratense TPR.G3274 Tp57577_TGAC_v2_scaf_82 + View
Tripterygium wilfordii TWI60G1720 NC_052246.1 + View
Tripterygium wilfordii TWI34G0346 NC_052235.1 - View
Vaccinium macrocarpon vmacro05606 Similar to RPOT2: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial (Nicotiana sylvestris OX%3D4096) chr12_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1383G2038 CM024070.1 - View
Vitis vinifera GSVIVG01010122001 chr1 + View
Vitis vinifera GSVIVG01036518001 chr14 - View