Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Gohir.D09G095500 PF00646//PF01535//PF13041 - F-box domain (F-box) // PPR repeat (PPR) // PPR repeat family (PPR_2) D09 - View
Gohir.D09G134900 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) D09 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr3.3282 chr3 - View
Actinidia chinensis Actinidia18623 Lachesis_group17 + View
Actinidia chinensis Actinidia07917 Lachesis_group0 - View
Avicennia marina MSTRG.5855 ScioBoG_102839_HRSCAF_103093 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.DLB7PH PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) arahy.Tifrunner.gnm1.Arahy.05 + View
Arabidopsis thaliana AT3G11460 Pentatricopeptide repeat (PPR) superfamily protein Encodes a DYW PPR protein that is involved in editing the mitochondrial NAD2 transcript at the site nad2-842. Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G30700.1)%3B Has 38316 Blast hits to 13864 proteins in 256 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 61%3B Fungi - 80%3B Plants - 37599%3B Viruses - 0%3B Other Eukaryotes - 568 (source: NCBI BLink). Chr3 + View
Amborella trichopoda ATR0820G002 AmTr_v1.0_scaffold00040 - View
Brassica carinata BcaB06g28157 ChrB06 - View
Brassica napus A05p37880 A05 - View
Brassica rapa BraA05t22582Z A05 - View
Beta vulgaris EL10Ac7g15803 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr7_EL10_PGA_scaffold5 + View
Camellia sinensis var. sinensis CSS0009345 PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Vitis vinifera] Chr11 - View
Cannabis sativa CANSAT54G2299 NC_044375.1 + View
Corylus avellana Haze_23406 Similar to PCMP-H60: Pentatricopeptide repeat-containing protein At2g27610 (Arabidopsis thaliana OX%3D3702) 6 - View
Corylus avellana Haze_19605 Similar to PCMP-H36: Putative pentatricopeptide repeat-containing protein At2g01510 (Arabidopsis thaliana OX%3D3702) 10 - View
Coffea canephora Cc02_g09520 40S ribosomal protein S17 chr2 + View
Coffea canephora Cc06_g05770 Putative pentatricopeptide repeat-containing protein At3g08820 chr6 - View
Coffea canephora Cc01_g09430 Pentatricopeptide repeat-containing protein At2g27610 chr1 - View
Cardamine hirsuta CARHR086020 Pentatricopeptide repeat-containing protein Chr3 + View
Cardamine hirsuta CARHR120230 Pentatricopeptide repeat-containing protein Chr4 - View
Carya illinoinensis CiPaw.14G030400 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr14 - View
Carya illinoinensis CiPaw.10G011000 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr10 + View
Carya illinoinensis CiPaw.09G016100 PF01535//PF12854//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr09 + View
Capsella rubella Carub.0004s0827 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_4 - View
Capsella rubella Carub.0003s1078 PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_3 + View
Cucumis sativus L. CsaV3_6G040730 Pentatricopeptide repeat-containing protein chr6 + View
Cucumis sativus L. CsaV3_3G037430 Pentatricopeptide repeat-containing protein chr3 + View
Davidia involucrata Dinv31682 GWHABJS00000015 - View
Durio zibethinus Duzib168G0837 NW_019168159.1 - View
Erigeron canadensis ECA233G4586 Conyza_canadensis_scaffold:1 - View
Eucalyptus grandis Eucgr.A01519 Chr01 - View
Eucalyptus grandis Eucgr.A02655 Chr01 - View
Eucalyptus grandis Eucgr.K02049 Chr11 - View
Eutrema salsugineum Thhalv10022435m.g PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_13 - View
Fragaria x ananassa FAN05G5802 K02962 - small subunit ribosomal protein S17e (RP-S17e, RPS17) Fvb6-3 + View
Fragaria x ananassa FAN05G2270 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb6-3 - View
Glycine max Glyma.10G074100 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Gm10 + View
Glycine max Glyma.03G194500 PTHR11240//PTHR11240:SF16 - RIBONUCLEASE T2 // RIBONUCLEASE 2 Gm03 + View
Gossypium raimondii Gorai.006G112200 Chr06 - View
Lotus japonicus Lj1g0021128 PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) chr1 - View
Lotus japonicus Lj3g0015563 PF01535//PF13812//PF14432 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) chr3 - View
Lonicera japonica Lj2P136T31 GWHAAZE00000002 - View
Lonicera japonica Lj1P1038T31 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_8_24360 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Lsat_1_v8_lg_8 + View
Malus domestica MD14G1026500 Tetratricopeptide repeat (TPR)-like superfamily protein Chr14 + View
Malus domestica MD11G1161500 Tetratricopeptide repeat (TPR)-like superfamily protein Chr11 - View
Manihot esculenta Manes.11G160300 Chromosome11 + View
Manihot esculenta Manes.08G026500 Chromosome08 + View
Nelumbo nucifera Nn6g34906 chr6 + View
Olea europaea Oeu051615.1 chr1 + View
Olea europaea Oeu017692.1 chr17 - View
Prunus persica Prupe.7G110800 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Pp07 + View
Papaver somniferum PSO339G0363 NC_039366.1 - View
Papaver somniferum PSO801G0691 NW_020628818.1 - View
Phaseolus vulgaris Phvul.005G124400 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr05 - View
Rosa chinensis RcHm_v2.0_Chr5g0046881 RcHm_v2.0_Chr5 + View
Rosa chinensis RcHm_v2.0_Chr5g0054641 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim03G0068700 chr03 - View
Rhododendron simsii Rhsim13G0109900 chr13 + View
Sechium edule Sed0014608 LG12 - View
Schrenkiella parvula Sp3g09690 PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) ch3-1 + View
Trochodendron aralioides TAR636G2966 group1 + View
Theobroma cacao Thecc.09G282300 Chromosome_9 + View
Tripterygium wilfordii TWI77G0293 NC_052236.1 + View
Vigna mungo VMungo1127G1564 CM024076.1 + View
Vitis vinifera GSVIVG01037506001 chr6 - View