Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
FAN22G0568 Fvb4-1 - View
FAN07G1571 Fvb4-4 + View
FAN17G2552 Fvb4-2 + View
FAN12G1097 Fvb4-3 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G4120 LG-1 - View
Acer truncatum Atru.chr11.2118 chr11 + View
Actinidia chinensis Actinidia27800 Lachesis_group10 + View
Actinidia chinensis Actinidia08143 Lachesis_group15 - View
Amaranthus hybridus Ah.03g133160 Protein POOR HOMOLOGOUS SYNAPSIS 1 AmaHy_arrow1_Scaffold_3 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.QD46ZG arahy.Tifrunner.gnm1.Arahy.13 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.I6QGYY arahy.Tifrunner.gnm1.Arahy.03 + View
Arabidopsis thaliana AT1G10710 poor homologous synapsis 1 Computational predictions suggested the presence of a small cysteine-rich protein beginning in intron 9 (Silverstein 2007)%2C but subsequent analysis revealed that this region contains a tenth exon for the At1g10710 gene. PHS1 regulates recombination and pairing of homologous chromosomes during meiotic prophase by controlling transport of RAD50 from cytoplasm to the nucleus. POOR HOMOLOGOUS SYNAPSIS 1 (PHS1)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10717.1)%3B Has 43 Blast hits to 42 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 43%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaC07g41800 ChrC07 - View
Brassica napus A09p64570 A09 + View
Brassica oleracea BolC8t52400H C8 - View
Camellia sinensis var. sinensis CSS0026295 PREDICTED: uncharacterized protein LOC101303040 [Fragaria vesca subsp. vesca] Chr6 + View
Cannabis sativa CANSAT01G1755 NC_044373.1 - View
Corylus avellana Haze_12236 Similar to PHS1: Protein POOR HOMOLOGOUS SYNAPSIS 1 (Arabidopsis thaliana OX%3D3702) 9 - View
Coffea canephora Cc11_g15560 Putative poor homologous synapsis 1 chr11 - View
Citrus clementina Ciclev10033875m.g scaffold_4 - View
Carpinus fangiana Cfa009198 Cfa03 - View
Cardamine hirsuta CARHR010890 Poor homologous synapsis 1 Chr1 + View
Carya illinoinensis CiPaw.05G183700 Chr05 + View
Citrullus lanatus ClCG08G017740 Poor homologous synapsis 1 CG_Chr08 + View
Chenopodium quinoa AUR62024297 Protein of unknown function C_Quinoa_Scaffold_4119 + View
Chenopodium quinoa AUR62005444 Protein of unknown function C_Quinoa_Scaffold_1214 - View
Capsella rubella Carub.0001s1022 scaffold_1 + View
Daucus carota DCAR_031138 hypothetical protein DCARv2_Chr9 - View
Erythranthe guttata Migut.E00193 scaffold_5 - View
Fragaria vesca FvH4_4g25900 Fvb4 - View
Gossypium hirsutum Gohir.D02G159700 D02 + View
Glycine max Glyma.08G283200 Gm08 + View
Gossypium raimondii Gorai.005G179800 Chr05 + View
Lotus japonicus Lj4g0008721 chr4 + View
Lonicera japonica Lj6C811T17 GWHAAZE00000006 - View
Malus domestica MD13G1097800 poor homologous synapsis 1 Chr13 - View
Manihot esculenta Manes.13G025900 Chromosome13 + View
Medicago truncatula Medtr8g069560 synapsis 1-like protein, putative chr8 + View
Nelumbo nucifera Nn3g16750 chr3 + View
Nicotiana tabacum Nitab4.5_0002552g0050 Unknown Nitab4.5_0002552 - View
Nicotiana tabacum Nitab4.5_0002255g0100 Unknown Nitab4.5_0002255 - View
Olea europaea Oeu049180.1 chr20 + View
Petunia axillaris Peaxi162Scf00128g00033 Poor ous synapsis 1, putative isoform 1 Peaxi162Scf00128 - View
Punica granatum PGR119G1584 NC_045132.1 - View
Prunus persica Prupe.1G247500 Pp01 + View
Papaver somniferum PSO063G0496 NC_039364.1 - View
Populus trichocarpa Potri.010G044800 Chr10 - View
Phaseolus vulgaris Phvul.003G063800 Chr03 - View
Quercus lobata QL03p058556 3 + View
Rosa chinensis RcHm_v2.0_Chr4g0433351 RcHm_v2.0_Chr4 - View
Rhododendron simsii Rhsim12G0041300 chr12 + View
Striga asiatica SGA_v2.0_scaffold63G21726 scaffold63 - View
Striga asiatica SGA_v2.0_scaffold87G27084 scaffold87 + View
Salvia bowleyana SalBow8G1297 GWHASIU00000004 + View
Simmondsia chinensis Sc04g0009420 GWHAASQ00000004 - View
Solanum lycopersicum Solyc05g013360.3 protein POOR HOMOLOGOUS SYNAPSIS 1 (AHRD V3.3 *** A0A2I4DDJ4_9ROSI) SL4.0ch05 - View
Solanum tuberosum PGSC0003DMG400018608 Gene of unknown function ST4.03ch05 - View
Theobroma cacao Thecc.02G257200 Poor ous synapsis 1 Chromosome_2 - View
Tripterygium wilfordii TWI36G0027 NC_052237.1 + View
Tripterygium wilfordii TWI75G0333 NC_052253.1 + View