Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CiPaw.12G141800 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Chr12 + View
CiPaw.10G084200 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Chr10 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr1.2235 chr1 - View
Actinidia chinensis Actinidia10583 Lachesis_group19 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.SQBY3A K12616 - enhancer of mRNA-decapping protein 4 (EDC4) arahy.Tifrunner.gnm1.Arahy.01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.M7DLA2 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) arahy.Tifrunner.gnm1.Arahy.14 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.EXSC1B K12616 - enhancer of mRNA-decapping protein 4 (EDC4) arahy.Tifrunner.gnm1.Arahy.04 - View
Amborella trichopoda ATR0751G014 AmTr_v1.0_scaffold00061 - View
Camellia sinensis var. sinensis CSS0030826 PREDICTED: enhancer of mRNA-decapping protein 4-like [Sesamum indicum] Chr7 - View
Cannabis sativa CANSAT11G0621 NC_044377.1 - View
Cannabis sativa CANSAT56G1356 NC_044371.1 - View
Corylus avellana Haze_07052 Similar to VCS: Enhancer of mRNA-decapping protein 4 (Arabidopsis thaliana OX%3D3702) 2 + View
Citrus clementina Ciclev10007261m.g scaffold_1 + View
Citrus clementina Ciclev10014046m.g scaffold_2 - View
Ceratophyllum demersum CDE10G0783 8 - View
Ceratophyllum demersum CDE10G0998 8 - View
Carpinus fangiana Cfa000007 Cfa01 - View
Carica papaya Cpa.g.sc27.194 supercontig_27 - View
Davidia involucrata Dinv10376 GWHABJS00000001 + View
Davidia involucrata Dinv04381 GWHABJS00000002 - View
Davidia involucrata Dinv40896 GWHABJS00000013 - View
Davidia involucrata Dinv06828 GWHABJS00000016 - View
Durio zibethinus Duzib213G0425 NW_019167993.1 - View
Durio zibethinus Duzib268G1004 NW_019168270.1 - View
Durio zibethinus Duzib192G0376 NW_019168037.1 - View
Eucalyptus grandis Eucgr.E04228 Chr05 + View
Erythranthe guttata Migut.H01726 scaffold_8 - View
Glycine max Glyma.18G072400 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Gm18 - View
Glycine max Glyma.09G016800 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Gm09 + View
Glycine max Glyma.15G122400 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Gm15 + View
Hydrangea macrophylla Hma1.2p1_0193F.1_g084140 Hma1.2p1_0193F.1 + View
Lupinus albus Lalb_Chr18g0057511 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Lalb_Chr18 + View
Lupinus albus Lalb_Chr15g0088371 PF16529 - WD40 region of Ge1, enhancer of mRNA-decapping protein (Ge1_WD40) Lalb_Chr15 + View
Lupinus albus Lalb_Chr20g0119661 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Lalb_Chr20 + View
Lotus japonicus Lj6g0025458 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) chr6 + View
Lotus japonicus Lj6g0010416 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) chr6 - View
Lonicera japonica Lj1A897T44 GWHAAZE00000001 + View
Magnolia biondii MBI15_g35676_MAGBIO AED:0.20 Chr15 - View
Magnolia biondii MBI14_g30654_MAGBIO AED:0.04 Chr14 - View
Malus domestica MD11G1041300 Transducin/WD40 repeat-like superfamily protein Chr11 + View
Manihot esculenta Manes.09G072500 Chromosome09 + View
Medicago truncatula Medtr2g027690 enhancer of mRNA-decapping-like protein chr2 + View
Nelumbo nucifera Nn1g07691 chr1 - View
Olea europaea Oeu019693.1 scaffold1839 - View
Petunia axillaris Peaxi162Scf00006g00717 Transducin/WD40 repeat-like superfamily protein, putative isoform 2 Peaxi162Scf00006 + View
Punica granatum PGR004G0187 NC_045131.1 + View
Pisum sativum Psat1g171600 WD40 region of Ge1 + enhancer of mRNA-decapping protein chr1LG6 - View
Papaver somniferum PSO675G0267 NC_039358.1 - View
Papaver somniferum PSO541G5418 NC_039363.1 + View
Populus trichocarpa Potri.006G001400 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Chr06 - View
Populus trichocarpa Potri.016G002100 PF16529 - WD40 region of Ge1, enhancer of mRNA-decapping protein (Ge1_WD40) Chr16 - View
Phaseolus vulgaris Phvul.006G060500 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Chr06 + View
Phaseolus vulgaris Phvul.006G135300 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Chr06 - View
Quercus lobata QL05p066377 5 - View
Rhododendron simsii Rhsim06G0234000 chr06 + View
Rhododendron simsii Rhsim04G0009400 chr04 - View
Striga asiatica SGA_v2.0_scaffold42G15938 scaffold42 - View
Salix brachista Sabra06G0001500 GWHAAZH00000006 - View
Salix brachista Sabra16G0007100 GWHAAZH00000016 + View
Solanum pennellii Sopen07g034150 Encodes VCS (VARICOSE). Involved in mRNA decapping. VCS forms a mRNA decapping complex with DCP1 (At1g08370) and DCP2 (At5g13570). Unlike DCP2, VCS itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. VCS is also required for leaf development. | VARICOSE (VCS) | FUNCTIONS IN: protein homodimerization activity, nucleotide binding | INVOLVED IN: mRNA catabolic process, deadenylation-independent decapping of nuclear-transcribed mRNA, leaf morphogenesis | LOCATED IN: cytosol, nucleus, cytoplasmic mRNA processing body | EXPRESSED IN: whole plant, guard cell, cultured cell | CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain , WD40 repeat 2 , WD40-repeat-containing domain , WD40/YVTN repeat-like-containing domain , WD40 repeat , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: varicose-related Spenn-ch07 + View
Selenicereus undatus Hund01842 Scaffold_33678 + View
Trochodendron aralioides TAR627G0307 group6 + View
Trochodendron aralioides TAR629G2148 group0 - View
Trochodendron aralioides TAR626G0018 group3 - View
Theobroma cacao Thecc.06G243400 Transducin/WD40 repeat-like superfamily protein Chromosome_6 + View
Theobroma cacao Thecc.07G005200 Transducin/WD40 repeat-like superfamily protein Chromosome_7 - View
Trifolium pratense TPR.G10492 Tp57577_TGAC_v2_scaf_217 + View
Tripterygium wilfordii TWI39G0122 NC_052250.1 - View
Tripterygium wilfordii TWI63G1743 NC_052240.1 - View
Tripterygium wilfordii TWI38G1429 NC_052252.1 + View
Vaccinium macrocarpon vmacro09608 Similar to VCS: Enhancer of mRNA-decapping protein 4 (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro11629 Similar to VCS: Enhancer of mRNA-decapping protein 4 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0540G0459 CM024075.1 + View
Vigna mungo VMungo0540G1408 CM024075.1 - View
Vitis vinifera GSVIVG01006976001 chrUn + View