Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Carub.0003s1662 PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) scaffold_3 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG11G7920 LG-11 - View
Acer truncatum Atru.chr4.2965 chr4 - View
Arabidopsis lyrata AL8G23000 scaffold_8 - View
Avicennia marina MSTRG.3868 ScioBoG_102837_HRSCAF_103074 + View
Amaranthus hybridus Ah.04g154860 Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial (Protein PENTATRICOPEPTIDE REPEAT 40) AmaHy_arrow1_Scaffold_4 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.TF3LVT arahy.Tifrunner.gnm1.Arahy.14 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.YQC48T arahy.Tifrunner.gnm1.Arahy.04 + View
Arabidopsis thaliana AT3G16890 pentatricopeptide (PPR) domain protein 40 Encodes a mitochondrial pentatricopeptide repeat (PPR) domain protein%2C PPR40%2C which provides a signalling link between mitochondrial electron transport and regulation of stress and hormonal responses. Mutations in PPR40 result in enhanced sensitivity to salt%2C ABA and oxidative stress%2C as well as reduced electron transport through Complex III (cytochrome c reductase). pentatricopeptide (PPR) domain protein 40 (PPR40)%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1)%3B Has 55842 Blast hits to 14078 proteins in 304 species: Archae - 4%3B Bacteria - 51%3B Metazoa - 561%3B Fungi - 1019%3B Plants - 52283%3B Viruses - 0%3B Other Eukaryotes - 1924 (source: NCBI BLink). Chr3 - View
Arabidopsis thaliana AT5G49350 Glycine-rich protein family Glycine-rich protein family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: hypocotyl%2C root%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56320.1)%3B Has 238380 Blast hits to 50570 proteins in 2556 species: Archae - 501%3B Bacteria - 82085%3B Metazoa - 74414%3B Fungi - 14097%3B Plants - 19695%3B Viruses - 3313%3B Other Eukaryotes - 44275 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaNung02598 Contig906 - View
Brassica napus A06p38390 A06 + View
Brassica oleracea BolC7t44514H C7 - View
Brassica rapa BraA06t26753Z A06 + View
Beta vulgaris EL10Ac3g04919 K17710 - pentatricopeptide repeat domain-containing protein 1 (PTCD1) Chr3_EL10_PGA_scaffold7 + View
Camellia sinensis var. sinensis CSS0000232 PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial isoform X1 [Vitis vinifera] Chr9 + View
Corylus avellana Haze_01077 Similar to PPR40: Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial (Arabidopsis thaliana OX%3D3702) 1 + View
Coffea canephora Cc03_g01100 Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial chr3 + View
Citrus clementina Ciclev10006939m.g scaffold_9 + View
Cardamine hirsuta CARHR182180 Glycine-rich protein Chr6 + View
Cardamine hirsuta CARHR092170 Pentatricopeptide repeat-containing protein Chr3 - View
Carya illinoinensis CiPaw.01G141700 Chr01 + View
Carya illinoinensis CiPaw.02G076500 PF13041 - PPR repeat family (PPR_2) Chr02 + View
Citrullus lanatus ClCG06G004730 Glycine-rich protein CG_Chr06 + View
Cucumis melo MELO3C006701.2 Pentatricopeptide repeat-containing protein chr06 - View
Cucumis melo MELO3C035194.2 Glycine-rich family protein, putative isoform 1 chr11 - View
Carica papaya Cpa.g.sc9.92 supercontig_9 + View
Chenopodium quinoa AUR62016141 PPR40: Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial C_Quinoa_Scaffold_3256 + View
Cucumis sativus L. CsaV3_6G022510 Glycine-rich protein family chr6 + View
Daucus carota DCAR_027017 hypothetical protein DCARv2_Chr8 - View
Daucus carota DCAR_023333 hypothetical protein DCARv2_Chr7 - View
Davidia involucrata Dinv44314 GWHABJS00000014 - View
Durio zibethinus Duzib151G1201 NW_019167904.1 - View
Erigeron canadensis ECA233G1761 Conyza_canadensis_scaffold:1 + View
Erigeron canadensis ECA246G3411 Conyza_canadensis_scaffold:8 - View
Eucalyptus grandis Eucgr.H04030 Chr08 - View
Erythranthe guttata Migut.G00097 scaffold_7 + View
Erythranthe guttata Migut.N00054 scaffold_14 + View
Eutrema salsugineum Thhalv10022362m.g PF13041 - PPR repeat family (PPR_2) scaffold_13 + View
Eutrema salsugineum Thhalv10004800m.g scaffold_6 + View
Fragaria x ananassa FAN07G2635 Fvb4-4 + View
Fragaria x ananassa FAN12G1068 Fvb4-3 - View
Fragaria x ananassa FAN12G3242 Fvb4-3 + View
Fragaria vesca FvH4_4g19330 Fvb4 - View
Gossypium hirsutum Gohir.A09G064700 PF13041 - PPR repeat family (PPR_2) A09 - View
Gossypium hirsutum Gohir.A10G167900 A10 + View
Gossypium hirsutum Gohir.D10G174000 D10 + View
Glycine max Glyma.09G038800 Gm09 + View
Gossypium raimondii Gorai.011G194700 Chr11 + View
Hydrangea macrophylla Hma1.2p1_0013F.1_g008880 Hma1.2p1_0013F.1 + View
Lupinus albus Lalb_Chr18g0058901 Lalb_Chr18 + View
Lotus japonicus Lj6g0008376 chr6 - View
Lonicera japonica Lj6A687G28 GWHAAZE00000006 - View
Lactuca sativa Lsat_1_v5_gn_6_114241 Lsat_1_v8_lg_6 - View
Lactuca sativa Lsat_1_v5_gn_6_19160 Lsat_1_v8_lg_6 + View
Malus domestica MD16G1158500 Glycine-rich protein family Chr16 + View
Malus domestica MD13G1157600 Glycine-rich protein family Chr13 + View
Manihot esculenta Manes.09G176000 Chromosome09 - View
Manihot esculenta Manes.03G202000 Chromosome03 - View
Medicago truncatula Medtr2g034760 Novel family chr2 + View
Petunia axillaris Peaxi162Scf00065g00322 Glycine-rich protein family Peaxi162Scf00065 + View
Punica granatum PGR004G0577 NC_045131.1 + View
Prunus persica Prupe.1G123300 Pp01 + View
Phaseolus vulgaris Phvul.009G254100 Chr09 - View
Phaseolus vulgaris Phvul.007G200600 Chr07 - View
Quercus lobata QL06p011459 6 - View
Rosa chinensis RcHm_v2.0_Chr4g0424351 RcHm_v2.0_Chr4 - View
Rhododendron simsii Rhsim04G0232700 chr04 - View
Striga asiatica SGA_v2.0_scaffold18G08390 scaffold18 - View
Salvia bowleyana SalBow8G4791 GWHASIU00000004 - View
Salix brachista Sabra05G0025700 GWHAAZH00000005 + View
Sechium edule Sed0022311 LG04 + View
Solanum lycopersicum Solyc01g060250.2 Unknown protein SL4.0ch01 + View
Schrenkiella parvula Sp2g19700 ch2-4 - View
Schrenkiella parvula Sp3g15130 PF13041 - PPR repeat family (PPR_2) ch3-1 - View
Solanum pennellii Sopen01g026450 Encodes a mitochondrial pentatricopeptide repeat (PPR) domain protein, PPR40, which provides a signalling link between mitochondrial electron transport and regulation of stress and hormonal responses. Mutations in PPR40 result in enhanced sensitivity to salt, ABA and oxidative stress, as well as reduced electron transport through Complex III (cytochrome c reductase). | pentatricopeptide (PPR) domain protein 40 (PPR40) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch01 + View
Selenicereus undatus Hund03099 Scaffold_19641 - View
Trochodendron aralioides TAR365G0161 group16 + View
Trochodendron aralioides TAR633G0381 group2 - View
Theobroma cacao Thecc.04G296000 Glycine-rich family protein Chromosome_4 - View
Tarenaya hassleriana THA.LOC109116877 OTU domain-containing protein 5-A isoform X1 NW_010966177.1 + View
Tripterygium wilfordii TWI73G0446 NC_052232.1 + View
Utricularia gibba unitig_748.g8711 unitig_748 + View
Vaccinium macrocarpon vmacro08072 Similar to PPR40: Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01035038001 chr5 + View