Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 6.3e-96 354.8 282 100.0
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 6.4e-72 275.0 285 83.5
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 4.0e-66 255.8 320 71.9
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 2.6e-65 253.1 282 68.4
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 1.9e-60 236.9 299 70.2
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 4.3e-60 235.7 136 81.6
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 4.3e-60 235.7 136 81.6
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 4.3e-60 235.7 136 81.6
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 4.3e-60 235.7 136 81.6
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 7.3e-60 235.0 282 68.1
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.2e-57 227.6 286 68.5
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 3.2e-55 219.5 127 82.7
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.1e-50 204.5 139 73.4
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.9e-44 183.7 280 58.2
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 4.6e-38 162.5 134 54.5
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 4.6e-38 162.5 132 56.8
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 6.0e-38 162.2 128 53.9
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.3e-37 161.0 132 56.1
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 1.7e-37 160.6 133 53.4
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.3e-37 160.2 132 55.3
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 3.9e-37 159.5 108 57.4
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 5.1e-37 159.1 131 53.4
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 1.9e-36 157.1 134 53.7
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 2.1e-35 153.7 129 53.5
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 4.8e-35 152.5 132 50.0
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 6.2e-35 152.1 127 52.0
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 8.1e-35 151.8 127 52.8
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 8.1e-35 151.8 107 57.0
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 1.4e-34 151.0 105 59.0
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 1.4e-34 151.0 129 51.9
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 1.4e-34 151.0 107 58.9
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 2.4e-34 150.2 105 60.0
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 4.0e-34 149.4 132 50.0
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 5.3e-34 149.1 125 52.0
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 1.2e-33 147.9 105 56.2
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 1.5e-33 147.5 132 47.7
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.5e-33 147.5 108 54.6
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 2.0e-33 147.1 133 50.4
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 2.0e-33 147.1 123 48.8
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 3.4e-33 146.4 115 50.4
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 4.4e-33 146.0 134 47.8
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 5.8e-33 145.6 107 57.0
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 5.8e-33 145.6 118 50.8
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 7.6e-33 145.2 107 55.1
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 9.9e-33 144.8 129 49.6
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 9.9e-33 144.8 131 51.1
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 1.3e-32 144.4 127 46.5
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 1.7e-32 144.1 115 55.7
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 2.2e-32 143.7 115 51.3
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.8e-32 142.9 101 54.5
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.8e-32 142.9 101 54.5
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 4.9e-32 142.5 101 53.5
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.9e-32 142.5 101 53.5
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 4.9e-32 142.5 122 47.5
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 8.4e-32 141.7 134 47.8
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 1.1e-31 141.4 113 48.7
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 1.1e-31 141.4 131 49.6
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.4e-31 141.0 115 49.6
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 1.9e-31 140.6 107 52.3
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 2.4e-31 140.2 134 47.0
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 5.4e-31 139.0 100 56.0
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 9.3e-31 138.3 118 50.0
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 9.3e-31 138.3 131 48.9
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 1.2e-30 137.9 131 48.9
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 1.2e-30 137.9 130 46.2
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 1.2e-30 137.9 130 45.4
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 3.5e-30 136.3 117 50.4
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 3.5e-30 136.3 123 46.3
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 6.0e-30 135.6 132 46.2
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 1.0e-29 134.8 131 45.0
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 1.3e-29 134.4 134 44.8
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.3e-29 134.4 130 45.4
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 1.7e-29 134.0 95 58.9
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 2.3e-29 133.7 106 50.9
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 6.6e-29 132.1 94 54.3
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 6.6e-29 132.1 102 55.9
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 8.7e-29 131.7 122 44.3
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 8.7e-29 131.7 105 51.4
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.1e-28 131.3 128 46.9
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 1.5e-28 131.0 130 42.3
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 2.5e-28 130.2 136 45.6
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 2.5e-28 130.2 111 51.4
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 3.3e-28 129.8 98 56.1
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 3.3e-28 129.8 98 56.1
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 3.3e-28 129.8 92 55.4
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 4.3e-28 129.4 129 43.4
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 5.6e-28 129.0 105 50.5
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 1.6e-27 127.5 124 42.7
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 3.6e-27 126.3 133 45.1
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 3.6e-27 126.3 105 50.5
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 8.1e-27 125.2 134 44.8
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 8.1e-27 125.2 91 54.9
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 1.1e-26 124.8 88 56.8
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 1.8e-26 124.0 94 54.3
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 2.4e-26 123.6 103 51.5
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 2.4e-26 123.6 136 41.9
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 6.9e-26 122.1 104 47.1
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 9.0e-26 121.7 99 48.5
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 9.0e-26 121.7 104 49.0
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.5e-25 120.9 134 38.8
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.0e-25 120.6 103 47.6
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 2.6e-25 120.2 126 44.4
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 2.6e-25 120.2 124 42.7
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 4.5e-25 119.4 135 37.8
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 7.6e-25 118.6 103 42.7
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 7.6e-25 118.6 114 44.7
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 9.9e-25 118.2 128 40.6
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.3e-24 117.9 128 40.6
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 4.9e-24 115.9 103 46.6
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 1.1e-23 114.8 112 42.9
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 1.9e-23 114.0 114 46.5
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 2.4e-23 113.6 130 43.1
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 2.4e-23 113.6 106 49.1
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 3.2e-23 113.2 124 38.7
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 5.5e-23 112.5 110 43.6
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 7.1e-23 112.1 103 44.7
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 9.3e-23 111.7 123 43.1
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 9.3e-23 111.7 133 40.6
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.2e-22 111.3 103 43.7
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 1.2e-22 111.3 103 42.7
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 2.1e-22 110.5 103 45.6
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 2.7e-22 110.2 119 43.7
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.7e-22 110.2 103 43.7
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 6.0e-22 109.0 108 42.6
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 7.9e-22 108.6 136 39.7
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 1.0e-21 108.2 129 39.5
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 1.0e-21 108.2 97 43.3
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.0e-21 108.2 102 43.1
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 2.3e-21 107.1 108 41.7
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 5.1e-21 105.9 100 40.0
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 8.7e-21 105.1 96 40.6
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 1.1e-20 104.8 123 39.0
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 1.1e-20 104.8 110 40.0
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.5e-20 104.4 95 44.2
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 2.5e-20 103.6 118 39.8
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 3.3e-20 103.2 119 40.3
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 3.3e-20 103.2 119 40.3
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 3.3e-20 103.2 119 40.3
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 3.3e-20 103.2 119 40.3
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 3.3e-20 103.2 119 40.3
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 7.4e-20 102.1 121 38.0
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 7.4e-20 102.1 114 39.5
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 9.6e-20 101.7 121 38.8
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 2.1e-19 100.5 112 36.6
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 2.8e-19 100.1 125 36.8
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 3.7e-19 99.8 121 38.0
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 3.7e-19 99.8 74 52.7
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 4.8e-19 99.4 90 47.8
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.1e-18 98.2 92 41.3
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.1e-18 98.2 124 36.3
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 1.4e-18 97.8 85 47.1
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.8e-18 97.4 125 36.8
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 1.8e-18 97.4 93 44.1
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 2.4e-18 97.1 136 36.8
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 6.9e-18 95.5 90 40.0
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.9e-18 95.5 97 42.3
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 9.0e-18 95.1 136 36.0
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 9.0e-18 95.1 97 42.3
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.5e-17 94.4 126 36.5
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 1.5e-17 94.4 97 40.2
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 1.5e-17 94.4 94 40.4
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 2.6e-17 93.6 97 39.2
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 5.8e-17 92.4 89 43.8
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 5.8e-17 92.4 87 43.7
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 2.2e-16 90.5 104 35.6
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 2.2e-16 90.5 126 35.7
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 2.9e-16 90.1 119 37.0
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 2.9e-16 90.1 100 39.0
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 2.9e-16 90.1 88 40.9
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 6.5e-16 89.0 98 42.9
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 2.5e-15 87.0 92 44.6
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.6e-14 84.3 136 36.0
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.1e-14 84.0 79 44.3
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 4.6e-14 82.8 66 47.0
Oeu056372.1 Olea europaea HOM05D002444 ORTHO05D004748 6.9e-10 68.9 57 52.6
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 3.4e-09 66.6 70 40.0
Thecc.10G185700 Theobroma cacao HOM05D008739 ORTHO05D010871 1.3e-08 64.7 82 39.0
HanXRQChr08g0230271 Helianthus annuus HOM05D008739 ORTHO05D010871 5.0e-08 62.8 75 38.7
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 1.4e-07 61.2 73 32.9
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 1.9e-07 60.8 52 48.1
MBI15_g46028_MAGBIO Magnolia biondii HOM05D008739 ORTHO05D010871 3.2e-07 60.1 68 36.8
Actinidia31640 Actinidia chinensis HOM05D008739 ORTHO05D010871 7.2e-07 58.9 68 35.3
MBI15_g32296_MAGBIO Magnolia biondii HOM05D008739 ORTHO05D010871 7.2e-07 58.9 68 35.3
DCAR_009469 Daucus carota HOM05D008739 ORTHO05D010871 1.6e-06 57.8 129 24.8
Cpa.g.sc2.284 Carica papaya HOM05D008739 ORTHO05D010871 2.7e-06 57.0 86 32.6


User provided reference genes

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