Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Carub.0007s2601 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_7 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG10G6420 LG-10 - View
Actinidia chinensis Actinidia40254 Lachesis_group22 - View
Arabidopsis lyrata AL8G22140 scaffold_8 - View
Avicennia marina MSTRG.24784 ScioBoG_4088_HRSCAF_4107 - View
Avicennia marina MSTRG.21618 ScioBoG_26769_HRSCAF_26899 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.5YE386 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) arahy.Tifrunner.gnm1.Arahy.02 - View
Arabidopsis thaliana AT5G48910 Pentatricopeptide repeat (PPR) superfamily protein Encodes LPA66%2C a chloroplast protein of the pentatricopeptide repeat family. In lpa66 mutants%2C editing of psbF that converts serine to phenylalanine is specifically impaired. lpa66 mutants also display a high chlorophyll fluorescence phenotype. LOW PSII ACCUMULATION 66 (LPA66)%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaC06g30725 ChrC06 + View
Brassica napus C07p39510 C07 - View
Brassica napus A06p38770 A06 + View
Brassica oleracea BolC7t44470H C7 - View
Brassica rapa BraA06t26795Z A06 + View
Capsicum annuum CAN.G484.29 PGAv.1.6.scaffold484 + View
Cannabis sativa CANSAT01G1067 NC_044373.1 - View
Coffea canephora Cc01_g17150 Putative Pentatricopeptide repeat-containing protein At2g13600 chr1 - View
Citrus clementina Ciclev10004576m.g scaffold_9 + View
Citrus clementina Ciclev10019256m.g scaffold_3 - View
Ceratophyllum demersum CDE05G0253 3 - View
Carpinus fangiana Cfa015369 Cfa06 - View
Carpinus fangiana Cfa002538 Cfa01 + View
Cardamine hirsuta CARHR182800 Pentatricopeptide repeat-containing protein Chr6 + View
Cardamine hirsuta CARHR284650 Pentatricopeptide repeat-containing protein NSCAFA.185 + View
Carya illinoinensis CiPaw.02G084300 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr02 + View
Carya illinoinensis CiPaw.03G152300 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr03 - View
Citrullus lanatus ClCG06G005260 Pentatricopeptide repeat-containing family protein CG_Chr06 + View
Citrullus lanatus ClCG09G009210 Pentatricopeptide repeat-containing protein CG_Chr09 - View
Cucumis melo MELO3C035186.2 pentatricopeptide repeat-containing protein At4g15720 chr11 - View
Davidia involucrata Dinv44405 GWHABJS00000014 - View
Davidia involucrata Dinv27151 GWHABJS00000014 + View
Durio zibethinus Duzib151G1185 NW_019167904.1 - View
Durio zibethinus Duzib211G0043 NW_019168049.1 + View
Eucalyptus grandis Eucgr.K02191 Chr11 - View
Eucalyptus grandis Eucgr.H03884 Chr08 - View
Erythranthe guttata Migut.N00112 scaffold_14 + View
Eutrema salsugineum Thhalv10003805m.g PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_6 - View
Fragaria x ananassa FAN24G1518 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb2-2 + View
Fragaria x ananassa FAN27G2005 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb2-1 + View
Fragaria vesca FvH4_2g19560 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb2 - View
Gossypium hirsutum Gohir.D09G060400 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) D09 - View
Glycine max Glyma.07G249400 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Gm07 + View
Glycine max Glyma.19G209300 PF12854//PF13041//PF13812 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Gm19 - View
Gossypium raimondii Gorai.006G075000 Chr06 - View
Lupinus albus Lalb_Chr13g0303731 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Lalb_Chr13 + View
Lotus japonicus Lj1g0016091 PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) chr1 - View
Malus domestica MD10G1169300 Pentatricopeptide repeat (PPR) superfamily protein Chr10 - View
Malus domestica MD05G1179700 Pentatricopeptide repeat (PPR) superfamily protein Chr05 - View
Manihot esculenta Manes.12G043000 Chromosome12 + View
Manihot esculenta Manes.15G014100 Chromosome15 + View
Nicotiana tabacum Nitab4.5_0000570g0100 Pentatricopeptide repeat, Tetratricopeptide-like helical Nitab4.5_0000570 + View
Prunus persica Prupe.1G138900 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Pp01 + View
Prunus persica Prupe.8G207000 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Pp08 - View
Pisum sativum Psat3g022760 PPR repeat family chr3LG5 + View
Phaseolus vulgaris Phvul.001G205100 PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Chr01 - View
Quercus lobata QL09p044438 9 + View
Quercus lobata QL09p052778 9 + View
Rosa chinensis RcHm_v2.0_Chr6g0285331 RcHm_v2.0_Chr6 - View
Salix brachista Sabra14G0098300 GWHAAZH00000014 + View
Simmondsia chinensis Sc17g0002630 GWHAASQ00000017 - View
Sechium edule Sed0001580 LG09 - View
Sechium edule Sed0001293 LG07 + View
Sapria himalayana SHI00277 scaffold1_25991295 + View
Solanum lycopersicum Solyc12g099620.1 Pentatricopeptide repeat-containing protein, mitochondrial (AHRD V3.3 *** A0A2G2VJF0_CAPBA) SL4.0ch12 - View
Solanum lycopersicum Solyc09g061340.1 Pentatricopeptide repeat (AHRD V3.3 *** A0A200R8S6_9MAGN) SL4.0ch09 - View
Schrenkiella parvula Sp7g13980 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) ch7-4 + View
Schrenkiella parvula Sp2g19300 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) ch2-4 - View
Solanum pennellii Sopen12g034290 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch12 - View
Solanum pennellii Sopen09g024100 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein Spenn-ch09 - View
Solanum tuberosum PGSC0003DMG400017649 Pentatricopeptide repeat-containing protein ST4.03ch09 - View
Solanum tuberosum PGSC0003DMG400004711 Pentatricopeptide repeat-containing protein, mitochondrial ST4.03ch12 - View
Selenicereus undatus Hund05561 Scaffold_19641 - View
Trochodendron aralioides TAR365G1016 group16 - View
Trochodendron aralioides TAR365G1165 group16 - View
Tarenaya hassleriana THA.LOC104801062 pentatricopeptide repeat-containing protein At1g06140%2C mitochondrial-like isoform X1 NW_010969548.1 - View
Tarenaya hassleriana THA.LOC104802683 pentatricopeptide repeat-containing protein At5g48910 NW_010970490.1 - View
Trifolium pratense TPR.G9620 Tp57577_TGAC_v2_LG6 + View
Tripterygium wilfordii TWI09G0701 NC_052245.1 - View
Tripterygium wilfordii TWI53G1295 NC_052244.1 - View
Tripterygium wilfordii TWI53G1350 NC_052244.1 + View
Vigna mungo VMungo1383G1120 CM024070.1 - View
Vigna mungo VMungo1215G2571 CM024074.1 + View