Gene: Solyc12g099620.1

General Information

Structural Information

Species Solanum lycopersicum
Gene Identifier Solyc12g099620.1
Transcript Identifier Solyc12g099620.1.1
Gene Type Coding gene
Location SL4.0ch12 : 66226756-66229041 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000001
#Genes/#Species 35287/100
Phylogenetic origin

ID ORTHO05D009097
#Genes/#Species 109/82
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

tid Solyc12g099620.1.1
uniprot A0A3Q7JFM9
gene_id Solyc12g099620

Descriptions

Short descriptions
Ortholog descriptions

Description Pentatricopeptide repeat-containing protein, mitochondrial (AHRD V3.3 *** A0A2G2VJF0_CAPBA)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009451	IBA	GOA Database	RNA modification
GO:1905639	ISO	PLAZA Integrative Orthology	positive regulation of mitochondrial mRNA catabolic process	AT4G32430

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding
GO:0003723	IBA	GOA Database	RNA binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0043231	IBA	GOA Database	intracellular membrane-bounded organelle
GO:0005739	ISO	PLAZA Integrative Orthology	mitochondrion	AT4G32430

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR002885	Pentatricopeptide repeat
IPR011990	Tetratricopeptide-like helical domain superfamily

Mapman id	Description
16.11.3.3.4.37	RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (GRS1/EMP9)