Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Ca_25335_v3 Ca_LG8_v3 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G3790 LG-4 + View
Acer truncatum Atru.chr9.1737 chr9 + View
Actinidia chinensis Actinidia28133 Lachesis_group1 + View
Arabidopsis lyrata AL2G33340 scaffold_2 + View
Avicennia marina MSTRG.9301 ScioBoG_12795_HRSCAF_12848 - View
Aquilegia oxysepala Aqoxy3G00068 CHR03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.L76SLB K13947 - auxin efflux carrier family (PIN) arahy.Tifrunner.gnm1.Arahy.05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.72M57I K13947 - auxin efflux carrier family (PIN) arahy.Tifrunner.gnm1.Arahy.15 - View
Arabidopsis thaliana AT1G73590 Auxin efflux carrier family protein Encodes an auxin efflux carrier involved in shoot and root development. It is involved in the maintenance of embryonic auxin gradients. Loss of function severely affects organ initiation%2C pin1 mutants are characterised by an inflorescence meristem that does not initiate any flowers%2C resulting in the formation of a naked inflorescence stem. PIN1 is involved in the determination of leaf shape by actively promoting development of leaf margin serrations. In roots%2C the protein mainly resides at the basal end of the vascular cells%2C but weak signals can be detected in the epidermis and the cortex. Expression levels and polarity of this auxin efflux carrier change during primordium development suggesting that cycles of auxin build-up and depletion accompany%2C and may direct%2C different stages of primordium development. PIN1 action on plant development does not strictly require function of PGP1 and PGP19 proteins. PIN-FORMED 1 (PIN1)%3B FUNCTIONS IN: transporter activity%3B INVOLVED IN: in 14 processes%3B LOCATED IN: apical part of cell%2C plasma membrane%2C membrane%2C basal plasma membrane%2C cytoplasm%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Auxin efflux carrier%2C subgroup (InterPro:IPR014024)%2C Auxin efflux carrier (InterPro:IPR004776)%3B BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1)%3B Has 5945 Blast hits to 4479 proteins in 806 species: Archae - 51%3B Bacteria - 3010%3B Metazoa - 784%3B Fungi - 134%3B Plants - 814%3B Viruses - 35%3B Other Eukaryotes - 1117 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaC07g38894 ChrC07 - View
Brassica napus C06p47680 C06 + View
Camellia sinensis var. sinensis CSS0005048 PREDICTED: probable auxin efflux carrier component 1c [Vitis vinifera] Chr15 - View
Capsicum annuum CAN.G843.60 PGAv.1.6.scaffold843 + View
Citrus clementina Ciclev10007787m.g scaffold_1 + View
Ceratophyllum demersum CDE11G0515 9 - View
Ceratophyllum demersum CDE05G3270 3 - View
Ceratophyllum demersum CDE05G2395 3 - View
Cardamine hirsuta CARHR066610 Auxin efflux carrier family protein Chr2 + View
Carya illinoinensis CiPaw.15G143200 K13947 - auxin efflux carrier family (PIN) Chr15 - View
Carya illinoinensis CiPaw.16G093200 K13947 - auxin efflux carrier family (PIN) Chr16 - View
Citrullus lanatus ClCG06G014330 Auxin efflux carrier CG_Chr06 + View
Cucumis melo MELO3C017357.2 Auxin efflux carrier component chr02 + View
Capsella rubella Carub.0002s2033 K13947 - auxin efflux carrier family (PIN) scaffold_2 + View
Cucumis sativus L. CsaV3_1G004350 Auxin efflux carrier component chr1 - View
Daucus carota DCAR_014502 hypothetical protein DCARv2_Chr4 + View
Davidia involucrata Dinv16114 GWHABJS00000019 + View
Durio zibethinus Duzib084G1080 NW_019167827.1 - View
Durio zibethinus Duzib205G0900 NW_019168381.1 + View
Eucalyptus grandis Eucgr.B00948 Chr02 - View
Eucalyptus grandis Eucgr.K02271 Chr11 - View
Erythranthe guttata Migut.D01545 scaffold_4 + View
Eutrema salsugineum Thhalv10018278m.g K13947 - auxin efflux carrier family (PIN) scaffold_9 - View
Fragaria x ananassa FAN08G0260 K13947 - auxin efflux carrier family (PIN) Fvb5-3 - View
Fragaria x ananassa FAN04G3263 K13947 - auxin efflux carrier family (PIN) Fvb5-4 + View
Fragaria x ananassa FAN13G2671 PF03547 - Membrane transport protein (Mem_trans) Fvb5-2 + View
Fragaria x ananassa FAN18G0174 K13947 - auxin efflux carrier family (PIN) Fvb5-1 + View
Fragaria vesca FvH4_5g17310 K13947 - auxin efflux carrier family (PIN) Fvb5 + View
Gossypium hirsutum Gohir.D12G269750 K13947 - auxin efflux carrier family (PIN) D12 - View
Gossypium hirsutum Gohir.D11G002800 K13947 - auxin efflux carrier family (PIN) D11 + View
Glycine max Glyma.07G102500 K13947 - auxin efflux carrier family (PIN) Gm07 + View
Glycine max Glyma.08G054700 K13947 - auxin efflux carrier family (PIN) Gm08 + View
Glycine max Glyma.09G176300 K13947 - auxin efflux carrier family (PIN) Gm09 - View
Gossypium raimondii Gorai.008G290000 Chr08 - View
Hydrangea macrophylla Hma1.2p1_0669F.1_g200090 Hma1.2p1_0669F.1 - View
Lupinus albus Lalb_Chr16g0386981 K13947 - auxin efflux carrier family (PIN) Lalb_Chr16 - View
Lupinus albus Lalb_Chr14g0370591 PF03547 - Membrane transport protein (Mem_trans) Lalb_Chr14 + View
Lotus japonicus Lj2g0006039 K13947 - auxin efflux carrier family (PIN) chr2 + View
Lotus japonicus Lj4g0009659 PF03547 - Membrane transport protein (Mem_trans) chr4 - View
Lonicera japonica Lj5A158T72 GWHAAZE00000005 - View
Malus domestica MD14G1236300 Auxin efflux carrier family protein Chr14 - View
Malus domestica MD06G1226800 Auxin efflux carrier family protein Chr06 - View
Manihot esculenta Manes.06G006800 Chromosome06 - View
Medicago truncatula Medtr6g069510 auxin efflux carrier family transporter chr6 + View
Medicago truncatula Medtr8g107360 auxin efflux carrier family transporter chr8 + View
Nelumbo nucifera Nn3g18275 chr3 - View
Nelumbo nucifera Nn4g24230 chr4 - View
Olea europaea Oeu031770.1 chr12 + View
Petunia axillaris Peaxi162Scf00683g00461 Auxin efflux carrier family protein Peaxi162Scf00683 - View
Punica granatum PGR083G0012 NC_045133.1 - View
Prunus persica Prupe.5G233100 K13947 - auxin efflux carrier family (PIN) Pp05 - View
Pisum sativum Psat1g032680 Membrane transport protein chr1LG6 - View
Pisum sativum Psat7g003040 Membrane transport protein chr7LG7 - View
Papaver somniferum PSO017G4574 NC_039362.1 + View
Papaver somniferum PSO478G0548 NC_039361.1 - View
Populus trichocarpa Potri.012G047200 K13947 - auxin efflux carrier family (PIN) Chr12 + View
Phaseolus vulgaris Phvul.004G150600 K13947 - auxin efflux carrier family (PIN) Chr04 - View
Phaseolus vulgaris Phvul.002G330300 K13947 - auxin efflux carrier family (PIN) Chr02 + View
Quercus lobata QL10p028900 10 - View
Rosa chinensis RcHm_v2.0_Chr7g0178461 RcHm_v2.0_Chr7 - View
Salix brachista Sabra12G0033200 GWHAAZH00000012 + View
Simmondsia chinensis Sc10g0009190 GWHAASQ00000010 - View
Sechium edule Sed0015953 LG12 - View
Sechium edule Sed0004000 LG01 - View
Solanum lycopersicum Solyc03g118740.3 SlPIN1 SL4.0ch03 + View
Schrenkiella parvula Sp5g28750 K13947 - auxin efflux carrier family (PIN) ch5-7 + View
Solanum pennellii Sopen03g037680 Encodes an auxin efflux carrier involved in shoot and root development. It is involved in the maintenance of embryonic auxin gradients. Loss of function severely affects organ initiation, pin1 mutants are characterised by an inflorescence meristem that does not initiate any flowers, resulting in the formation of a naked inflorescence stem. PIN1 is involved in the determination of leaf shape by actively promoting development of leaf margin serrations. In roots, the protein mainly resides at the basal end of the vascular cells, but weak signals can be detected in the epidermis and the cortex. Expression levels and polarity of this auxin efflux carrier change during primordium development suggesting that cycles of auxin build-up and depletion accompany, and may direct, different stages of primordium development. PIN1 action on plant development does not strictly require function of PGP1 and PGP19 proteins. | PIN-FORMED 1 (PIN1) | FUNCTIONS IN: transporter activity | INVOLVED IN: in 14 processes | LOCATED IN: apical part of cell, plasma membrane, membrane, basal plasma membrane, cytoplasm | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup , Auxin efflux carrier | BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein Spenn-ch03 + View
Solanum tuberosum PGSC0003DMG400005750 PIN1-like auxin transport protein ST4.03ch03 + View
Theobroma cacao Thecc.03G057200 Auxin efflux facilitator Chromosome_3 + View
Tarenaya hassleriana THA.LOC104812169 auxin efflux carrier component 1 NW_010965372.1 - View
Trifolium pratense TPR.G1439 Tp57577_TGAC_v2_LG4 - View
Vigna mungo VMungo0251G2853 CM024069.1 + View
Vigna mungo VMungo0464G0084 CM024077.1 - View