Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0013451 PREDICTED: staphylococcal nuclease domain-containing protein 1 [Vitis vinifera] Chr2 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr6.1949 chr6 - View
Actinidia chinensis Actinidia25503 Lachesis_group1 + View
Actinidia chinensis Actinidia18283 Lachesis_group13 - View
Actinidia chinensis Actinidia36851 Lachesis_group9 + View
Actinidia chinensis Actinidia08918 Lachesis_group2 + View
Arabidopsis lyrata AL8G38540 scaffold_8 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.039TZW K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) arahy.Tifrunner.gnm1.Arahy.03 - View
Arabidopsis thaliana AT5G07350 TUDOR-SN protein 1 RNA binding protein with nuclease activity essential for stress response. Involved in mechanisms acting on mRNAs entering the secretory pathway. Functionally redundant with TSN2. TUDOR-SN protein 1 (Tudor1)%3B FUNCTIONS IN: RNA binding%2C nuclease activity%2C nucleic acid binding%3B INVOLVED IN: response to cadmium ion%2C protein secretion%2C response to stress%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: M germinated pollen stage%2C seedling growth%3B CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021)%2C RNA-induced silencing complex%2C nuclease component Tudor-SN (InterPro:IPR016685)%2C Staphylococcal nuclease (SNase-like)%2C OB-fold (InterPro:IPR016071)%2C Tudor subgroup (InterPro:IPR018351)%2C Tudor domain (InterPro:IPR002999)%2C Maternal tudor protein (InterPro:IPR008191)%3B BEST Arabidopsis thaliana protein match is: TUDOR-SN protein 2 (TAIR:AT5G61780.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 - View
Arabidopsis thaliana AT5G61780 TUDOR-SN protein 2 Involved in the regulation of AtGA20ox3 expression%2C as well as seed germination. TUDOR-SN protein 2 (Tudor2)%3B FUNCTIONS IN: RNA binding%2C nuclease activity%2C nucleic acid binding%3B INVOLVED IN: response to cadmium ion%2C protein secretion%2C gibberellin biosynthetic process%2C seed germination%2C response to stress%3B LOCATED IN: cytosol%2C nuclear envelope%2C endoplasmic reticulum%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 17 growth stages%3B CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021)%2C RNA-induced silencing complex%2C nuclease component Tudor-SN (InterPro:IPR016685)%2C Staphylococcal nuclease (SNase-like)%2C OB-fold (InterPro:IPR016071)%2C Tudor subgroup (InterPro:IPR018351)%2C Tudor domain (InterPro:IPR002999)%2C Maternal tudor protein (InterPro:IPR008191)%3B BEST Arabidopsis thaliana protein match is: TUDOR-SN protein 1 (TAIR:AT5G07350.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Amborella trichopoda ATR0582G099 AmTr_v1.0_scaffold00016 - View
Brassica carinata BcaC03g18096 ChrC03 + View
Brassica carinata BcaC01g02429 ChrC01 + View
Brassica carinata BcaB07g29821 ChrB07 - View
Brassica napus A06p28430 A06 + View
Brassica napus C03p65380 C03 - View
Brassica oleracea BolC2t12218H C2 + View
Cannabis sativa CANSAT56G3711 NC_044371.1 + View
Cicer arietinum L. Ca_17048_v3 Ca_LG5_v3 + View
Corylus avellana Haze_07080 Similar to TSN1: Ribonuclease TUDOR 1 (Arabidopsis thaliana OX%3D3702) 4 + View
Coffea canephora Cc04_g05640 Putative Staphylococcal nuclease domain-containing protein 1 chr4 + View
Citrus clementina Ciclev10030606m.g scaffold_4 - View
Cardamine hirsuta CARHR275540 Nuclease domain-containing protein Chr8 + View
Carya illinoinensis CiPaw.12G000200 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) Chr12 + View
Corchorus olitorius COL.COLO4_37280 hypothetical protein AWUE01023871.1 - View
Carica papaya Cpa.g.sc13.196 supercontig_13 - View
Daucus carota DCAR_016328 hypothetical protein DCARv2_Chr5 + View
Daucus carota DCAR_025630 hypothetical protein DCARv2_Chr7 + View
Daucus carota DCAR_021390 hypothetical protein DCARv2_Chr6 - View
Davidia involucrata Dinv13697 GWHABJS00000006 - View
Davidia involucrata Dinv23243 GWHABJS00000019 - View
Durio zibethinus Duzib205G0651 NW_019168381.1 - View
Durio zibethinus Duzib084G0519 NW_019167827.1 - View
Erigeron canadensis ECA232G1330 Conyza_canadensis_scaffold:2 - View
Erythranthe guttata Migut.D01169 scaffold_4 + View
Eutrema salsugineum Thhalv10012565m.g K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) scaffold_2 - View
Fragaria x ananassa FAN04G2635 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) Fvb5-4 - View
Fragaria x ananassa FAN18G4031 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) Fvb5-1 - View
Fragaria x ananassa FAN13G1578 Fvb5-2 + View
Fragaria vesca FvH4_5g09960 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) Fvb5 - View
Gossypium hirsutum Gohir.D12G197100 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) D12 - View
Gossypium hirsutum Gohir.D11G042400 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) D11 - View
Gossypium hirsutum Gohir.A11G039100 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) A11 - View
Gossypium hirsutum Gohir.A12G194700 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) A12 - View
Glycine max Glyma.04G203000 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) Gm04 - View
Glycine max Glyma.06G162500 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) Gm06 + View
Glycine max Glyma.08G006400 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) Gm08 + View
Gossypium raimondii Gorai.007G045600 Chr07 - View
Gossypium raimondii Gorai.008G211700 Chr08 - View
Helianthus annuus HanXRQChr09g0274371 Probable TUDOR-SN protein 1 HanXRQChr09 + View
Lupinus albus Lalb_Chr11g0068981 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) Lalb_Chr11 + View
Lupinus albus Lalb_Chr08g0237631 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) Lalb_Chr08 - View
Lotus japonicus Lj4g0022403 3.1.31.1 - Micrococcal nuclease / Micrococcal endonuclease chr4 - View
Lotus japonicus Lj1g0018640 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) chr1 - View
Lonicera japonica Lj5A85T107 GWHAAZE00000005 + View
Lonicera japonica Lj9C488T17 GWHAAZE00000009 - View
Lactuca sativa Lsat_1_v5_gn_4_85420 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) Lsat_1_v8_lg_4 - View
Lactuca sativa Lsat_1_v5_gn_1_29960 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) Lsat_1_v8_lg_1 + View
Malus domestica MD14G1144600 TUDOR-SN protein 1 Chr14 + View
Manihot esculenta Manes.14G043200 Chromosome14 + View
Manihot esculenta Manes.06G128300 Chromosome06 - View
Medicago truncatula Medtr3g098420 110 kDa 4SNc-tudor domain protein chr3 + View
Olea europaea Oeu013668.4 chr12 + View
Oryza sativa ssp. japonica Os04g0402200 Similar to RNA binding protein Rp120. chr04 - View
Prunus persica Prupe.5G139000 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) Pp05 + View
Pisum sativum Psat7g040120 Tudor domain chr7LG7 - View
Populus trichocarpa Potri.012G111200 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) Chr12 - View
Phaseolus vulgaris Phvul.002G280100 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) Chr02 + View
Rosa chinensis RcHm_v2.0_Chr7g0188331 RcHm_v2.0_Chr7 + View
Rhododendron simsii Rhsim08G0199800 chr08 - View
Rhododendron simsii Rhsim12G0182300 chr12 - View
Striga asiatica SGA_v2.0_scaffold40G15690 scaffold40 - View
Salvia bowleyana SalBow1G2272 GWHASIU00000001 - View
Salix brachista Sabra12G0081000 GWHAAZH00000012 - View
Salix brachista Sabra15G0131500 GWHAAZH00000015 - View
Solanum lycopersicum Solyc03g118010.4 Nuclease domain-containing protein 1-like (AHRD V3.3 *** A0A2K3NZ95_TRIPR) SL4.0ch03 - View
Schrenkiella parvula Sp2g24980 K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) ch2-4 + View
Solanum pennellii Sopen03g036910 RNA binding protein with nuclease activity essential for stress response. Involved in mechanisms acting on mRNAs entering the secretory pathway. Functionally redundant with TSN2. | TUDOR-SN protein 1 (Tudor1) | CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) , RNA-induced silencing complex, nuclease component Tudor-SN , Staphylococcal nuclease (SNase-like), OB-fold , Tudor subgroup , Tudor domain , Maternal tudor protein | BEST Arabidopsis thaliana protein match is: TUDOR-SN protein 2 Spenn-ch03 - View
Trochodendron aralioides TAR622G1219 group8 - View
Theobroma cacao Thecc.03G143000 TUDOR-SN protein 1 Chromosome_3 - View
Tarenaya hassleriana THA.LOC104801730 staphylococcal nuclease domain-containing protein 1-like NW_010960188.1 + View
Tarenaya hassleriana THA.LOC104818290 staphylococcal nuclease domain-containing protein 1-like NW_010966092.1 - View
Trifolium pratense TPR.G16949 Tp57577_TGAC_v2_LG1 - View
Trifolium pratense TPR.G12895 Tp57577_TGAC_v2_LG3 + View
Tripterygium wilfordii TWI23G0679 NC_052239.1 + View
Tripterygium wilfordii TWI14G0055 NC_052249.1 - View
Tripterygium wilfordii TWI39G1002 NC_052250.1 - View
Vaccinium macrocarpon vmacro19101 Similar to TSN1: Ribonuclease TUDOR 1 (Arabidopsis thaliana OX%3D3702) chr5_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro16769 Similar to TSN1: Ribonuclease TUDOR 1 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0251G2525 CM024069.1 + View
Vitis vinifera GSVIVG01005677001 chrUn + View