Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0047644 hypothetical protein CICLE_v10002804mg [Citrus clementina] Chr6 - View
CSS0035186 hypothetical protein CICLE_v10002804mg [Citrus clementina] Chr3 + View
CSS0010265 Gamma histone variant H2AX [Theobroma cacao] Contig766 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr5.1304 chr5 - View
Actinidia chinensis Actinidia00710 Lachesis_group19 + View
Actinidia chinensis Actinidia24295 Lachesis_group24 - View
Avicennia marina MSTRG.18202 ScioBoG_22153_HRSCAF_22259 - View
Avicennia marina MSTRG.21593 ScioBoG_26769_HRSCAF_26899 + View
Avicennia marina MSTRG.17427 ScioBoG_19834_HRSCAF_19925 - View
Amaranthus hybridus Ah.08g212780 AmaHy_arrow1_Scaffold_8 + View
Aquilegia oxysepala Aqoxy5G00592 CHR05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ZG8UEM K11251 - histone H2A (H2A) arahy.Tifrunner.gnm1.Arahy.06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.M37KN5 K11251 - histone H2A (H2A) arahy.Tifrunner.gnm1.Arahy.06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.PLJ68Y K11251 - histone H2A (H2A) arahy.Tifrunner.gnm1.Arahy.16 + View
Capsicum annuum CAN.G426.6 PGAv.1.6.scaffold426 + View
Cannabis sativa CANSAT25G2700 NC_044370.1 - View
Cicer arietinum L. Ca_08548_v3 Ca_LG3_v3 - View
Corylus avellana Haze_04265 Similar to At1g54690: Probable histone H2AXb (Arabidopsis thaliana OX%3D3702) 2 + View
Corylus avellana Haze_04779 Similar to HIS2A: Histone H2AX (Cicer arietinum OX%3D3827) 2 - View
Coffea canephora Cc01_g20020 Histone H2AX chr1 + View
Citrus clementina Ciclev10002804m.g scaffold_5 + View
Citrus clementina Ciclev10023264m.g scaffold_3 + View
Ceratophyllum demersum CDE05G0471 3 - View
Carpinus fangiana Cfa006521 Cfa02 - View
Cardamine hirsuta CARHR055830 Histone H2A Chr2 - View
Carya illinoinensis CiPaw.07G012500 K11251 - histone H2A (H2A) Chr07 - View
Carya illinoinensis CiPaw.08G168300 K11251 - histone H2A (H2A) Chr08 + View
Citrullus lanatus ClCG09G006630 Histone H2A CG_Chr09 - View
Cucumis melo MELO3C015363.2 Histone H2A chr02 - View
Cucumis melo MELO3C015882.2 Histone H2A chr01 + View
Corchorus olitorius COL.COLO4_13562 Histone H2A AWUE01015201.1 + View
Corchorus olitorius COL.COLO4_08046 Histone H2A AWUE01013554.1 + View
Carica papaya Cpa.g.sc9.144 supercontig_9 + View
Chenopodium quinoa AUR62036675 Histone H2AX C_Quinoa_Scaffold_3901 + View
Chenopodium quinoa AUR62034593 Histone H2AX C_Quinoa_Scaffold_3297 - View
Cucumis sativus L. CsaV3_7G028390 Histone H2A chr7 - View
Cucumis sativus L. CsaV3_1G039370 Histone H2A chr1 - View
Daucus carota DCAR_018374 hypothetical protein DCARv2_Chr5 - View
Daucus carota DCAR_012438 hypothetical protein DCARv2_Chr3 - View
Daucus carota DCAR_002780 hypothetical protein DCARv2_Chr1 + View
Davidia involucrata Dinv40232 GWHABJS00000005 + View
Davidia involucrata Dinv11282 GWHABJS00000007 - View
Durio zibethinus Duzib133G0383 NW_019167938.1 - View
Durio zibethinus Duzib138G0073 NW_019167893.1 - View
Eucalyptus grandis Eucgr.H04433 Chr08 - View
Eucalyptus grandis Eucgr.B02031 Chr02 + View
Erythranthe guttata Migut.N02125 scaffold_14 + View
Erythranthe guttata Migut.D00241 scaffold_4 - View
Eutrema salsugineum Thhalv10023750m.g K11251 - histone H2A (H2A) scaffold_8 + View
Fragaria x ananassa FAN20G3036 K11251 - histone H2A (H2A) Fvb2-3 - View
Fragaria x ananassa FAN15G2878 K11251 - histone H2A (H2A) Fvb2-4 + View
Fragaria x ananassa FAN05G2550 K11251 - histone H2A (H2A) Fvb6-3 - View
Fragaria x ananassa FAN02G2630 PF00125 - Core histone H2A/H2B/H3/H4 (Histone) Fvb6-4 - View
Fragaria x ananassa FAN05G0181 K11251 - histone H2A (H2A) Fvb6-3 + View
Fragaria vesca FvH4_6g04950 K11251 - histone H2A (H2A) Fvb6 - View
Fragaria vesca FvH4_2g24430 K11251 - histone H2A (H2A) Fvb2 + View
Gossypium hirsutum Gohir.A08G071500 K11251 - histone H2A (H2A) A08 + View
Gossypium hirsutum Gohir.D08G202700 K11251 - histone H2A (H2A) D08 - View
Gossypium hirsutum Gohir.A13G172300 K11251 - histone H2A (H2A) A13 - View
Gossypium hirsutum Gohir.D08G079700 K11251 - histone H2A (H2A) D08 + View
Gossypium hirsutum Gohir.A08G044400 K11251 - histone H2A (H2A) A08 + View
Gossypium hirsutum Gohir.D08G054100 K11251 - histone H2A (H2A) D08 + View
Glycine max Glyma.19G151400 K11251 - histone H2A (H2A) Gm19 - View
Glycine max Glyma.03G148100 K11251 - histone H2A (H2A) Gm03 - View
Gossypium raimondii Gorai.007G291200 Chr07 - View
Gossypium raimondii Gorai.004G214100 Chr04 - View
Gossypium raimondii Gorai.004G084700 Chr04 + View
Hydrangea macrophylla Hma1.2p1_1651F.1_g295780 Hma1.2p1_1651F.1 - View
Lotus japonicus Lj1g0015102 K11251 - histone H2A (H2A) chr1 + View
Lonicera japonica Lj1C40T17 GWHAAZE00000001 - View
Lactuca sativa Lsat_1_v5_gn_9_5060 K11251 - histone H2A (H2A) Lsat_1_v8_lg_9 - View
Magnolia biondii MBI19_g25940_MAGBIO AED:0.21 Chr19 + View
Malus domestica MD11G1296200 gamma histone variant H2AX Chr11 + View
Malus domestica MD12G1227300 Histone superfamily protein Chr12 + View
Malus domestica MD03G1273800 gamma histone variant H2AX Chr03 + View
Manihot esculenta Manes.05G070200 Chromosome05 - View
Medicago truncatula Medtr7g093910 core histone H2A/H2B/H3/H4 chr7 - View
Nicotiana tabacum Nitab4.5_0002093g0060 Histone H2A, Histone-fold, Histone core Nitab4.5_0002093 + View
Nicotiana tabacum Nitab4.5_0001651g0160 Histone-fold, Histone H2A Nitab4.5_0001651 - View
Olea europaea Oeu047478.1 chr20 + View
Oryza sativa ssp. japonica Os12g0530000 Similar to Histone H2A. chr12 - View
Petunia axillaris Peaxi162Scf01039g00230 histone H2A 2 Peaxi162Scf01039 - View
Punica granatum PGR119G1523 NC_045132.1 - View
Prunus persica Prupe.8G250000 K11251 - histone H2A (H2A) Pp08 + View
Papaver somniferum PSO170G5631 NC_039360.1 - View
Papaver somniferum PSO302G0071 NW_020624820.1 - View
Populus trichocarpa Potri.013G028800 K11251 - histone H2A (H2A) Chr13 + View
Populus trichocarpa Potri.005G040700 K11251 - histone H2A (H2A) Chr05 + View
Phaseolus vulgaris Phvul.001G146100 K11251 - histone H2A (H2A) Chr01 - View
Quercus lobata QL12p023407 12 + View
Rosa chinensis RcHm_v2.0_Chr3g0453441 RcHm_v2.0_Chr3 - View
Rosa chinensis RcHm_v2.0_Chr6g0292261 RcHm_v2.0_Chr6 + View
Rhododendron simsii Rhsim07G0178300 chr07 - View
Rhododendron simsii Rhsim13G0018900 chr13 - View
Striga asiatica SGA_v2.0_scaffold11G05771 scaffold11 - View
Striga asiatica SGA_v2.0_scaffold36G14369 scaffold36 - View
Striga asiatica SGA_v2.0_scaffold1G00429 scaffold1 - View
Striga asiatica SGA_v2.0_scaffold172G39046 scaffold172 + View
Salvia bowleyana SalBow3G4333 GWHASIU00000006 + View
Salix brachista Sabra05G0039800 GWHAAZH00000005 + View
Sechium edule Sed0016486 LG05 - View
Sechium edule Sed0027772 LG09 + View
Sechium edule Sed0014993 LG07 + View
Solanum lycopersicum Solyc09g074300.1 Histone H2A (AHRD V3.3 *** A0A1U8GAC7_CAPAN) SL4.0ch09 + View
Solanum lycopersicum Solyc06g084430.4 Histone H2A (AHRD V3.3 *-* A0A2G2WMP9_CAPBA) SL4.0ch06 + View
Solanum pennellii Sopen09g029130 Histone H2AX - Cicer arietinum (Chickpea) (Garbanzo), Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (, #947, -H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse, #947, -H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no, #947, -H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of, #947, -H2AX to a maximum of 50 diffuse foci. The level of, #947, H2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10ñ20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. | H2AXA | FUNCTIONS IN: DNA binding | INVOLVED IN: nucleosome assembly | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Histone H2A , Histone-fold , Histone core | BEST Arabidopsis thaliana protein match is: gamma histone variant H2AX Spenn-ch09 + View
Solanum pennellii Sopen06g035820 Probable histone H2AXb - Oryza sativa (Rice), Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (, #947, -H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse, #947, -H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no, #947, -H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of, #947, -H2AX to a maximum of 50 diffuse foci. The level of, #947, H2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10ñ20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. | H2AXA | FUNCTIONS IN: DNA binding | INVOLVED IN: nucleosome assembly | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Histone H2A , Histone-fold , Histone core | BEST Arabidopsis thaliana protein match is: gamma histone variant H2AX Spenn-ch06 + View
Solanum tuberosum PGSC0003DMG400003816 Histone H2A ST4.03ch09 + View
Solanum tuberosum PGSC0003DMG400024029 Histone H2A ST4.03ch06 + View
Trochodendron aralioides TAR365G0702 group16 + View
Trochodendron aralioides TAR633G0211 group2 + View
Theobroma cacao Thecc.01G288000 Gamma histone variant H2AX Chromosome_1 + View
Tripterygium wilfordii TWI12G0904 NC_052243.1 + View
Tripterygium wilfordii TWI23G1047 NC_052239.1 - View
Tripterygium wilfordii TWI59G0978 NC_052248.1 - View
Vaccinium macrocarpon vmacro02521 Similar to HIS2A: Histone H2AX (Cicer arietinum OX%3D3827) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1383G0304 CM024070.1 - View
Vitis vinifera GSVIVG01011034001 chr7 + View