Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0040067 PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial isoform X1 [Sesamum indicum] Chr1 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G5950 LG-5 - View
Actinidia chinensis Actinidia11169 Lachesis_group5 + View
Actinidia chinensis Actinidia24406 Lachesis_group19 + View
Arabidopsis lyrata AL4G25980 scaffold_4 + View
Arabidopsis lyrata AL1G16440 scaffold_1 - View
Avicennia marina MSTRG.15078 ScioBoG_19538_HRSCAF_19626 + View
Arabidopsis thaliana AT1G06430 FTSH protease 8 encodes a FtsH protease that is localized to the chloroplast FTSH protease 8 (FTSH8)%3B FUNCTIONS IN: metallopeptidase activity%2C ATP-dependent peptidase activity%2C ATPase activity%2C zinc ion binding%3B INVOLVED IN: PSII associated light-harvesting complex II catabolic process%3B LOCATED IN: thylakoid%2C chloroplast thylakoid membrane%2C chloroplast%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase M41%2C FtsH (InterPro:IPR005936)%2C ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA-type%2C conserved site (InterPro:IPR003960)%2C Peptidase M41 (InterPro:IPR000642)%2C Peptidase M41%2C FtsH extracellular (InterPro:IPR011546)%3B BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1)%3B Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592%3B Bacteria - 17123%3B Metazoa - 4966%3B Fungi - 3846%3B Plants - 3320%3B Viruses - 34%3B Other Eukaryotes - 10681 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT2G30950 FtsH extracellular protease family Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype%2C which decreases during development. Transcript and protein levels increase with light intensity. In plsp1-1 mutant plastids%2C the nonmature form of the protein localizes in the membrane. VARIEGATED 2 (VAR2)%3B FUNCTIONS IN: metallopeptidase activity%2C ATP-dependent peptidase activity%2C ATPase activity%2C zinc ion binding%3B INVOLVED IN: photoinhibition%2C oxygen and reactive oxygen species metabolic process%2C thylakoid membrane organization%2C PSII associated light-harvesting complex II catabolic process%2C protein catabolic process%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase M41%2C FtsH (InterPro:IPR005936)%2C ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA-type%2C conserved site (InterPro:IPR003960)%2C Peptidase M41 (InterPro:IPR000642)%2C Peptidase M41%2C FtsH extracellular (InterPro:IPR011546)%3B BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1)%3B Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597%3B Bacteria - 18199%3B Metazoa - 4991%3B Fungi - 3835%3B Plants - 3350%3B Viruses - 34%3B Other Eukaryotes - 10818 (source: NCBI BLink). Chr2 + View
Beta vulgaris EL10Ac9g20988 PTHR23076//PTHR23076:SF60 - METALLOPROTEASE M41 FTSH // SUBFAMILY NOT NAMED Chr9_EL10_PGA_scaffold8 - View
Capsicum annuum CAN.G1360.9 PGAv.1.6.scaffold1360 + View
Cannabis sativa CANSAT64G1095 NC_044379.1 - View
Corylus avellana Haze_13433 Similar to FTSH2: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic (Arabidopsis thaliana OX%3D3702) 5 + View
Coffea canephora Cc05_g08640 ATP-dependent zinc metalloprotease FTSH 2, chloroplastic chr5 - View
Citrus clementina Ciclev10017239m.g scaffold_2 - View
Cardamine hirsuta CARHR124470 ATP-dependent zinc metalloprotease FtsH Chr4 + View
Citrullus lanatus ClCG07G002570 ATP-dependent zinc metalloprotease FtsH CG_Chr07 + View
Cucumis melo MELO3C018713.2 ATP-dependent zinc metalloprotease FTSH 2, chloroplastic chr01 + View
Carica papaya Cpa.g.sc52.149 supercontig_52 + View
Chenopodium quinoa AUR62024043 FTSH2: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic C_Quinoa_Scaffold_3389 + View
Capsella rubella Carub.0004s1217 PTHR23076//PTHR23076:SF60 - METALLOPROTEASE M41 FTSH // SUBFAMILY NOT NAMED scaffold_4 + View
Cucumis sativus L. CsaV3_7G005790 ATP-dependent zinc metalloprotease FTSH protein chr7 - View
Davidia involucrata Dinv08368 GWHABJS00000001 + View
Davidia involucrata Dinv06194 GWHABJS00000013 - View
Erigeron canadensis ECA246G0065 Conyza_canadensis_scaffold:8 + View
Eucalyptus grandis Eucgr.A01933 Chr01 - View
Fragaria x ananassa FAN09G3290 PTHR23076//PTHR23076:SF60 - METALLOPROTEASE M41 FTSH // SUBFAMILY NOT NAMED Fvb6-2 - View
Fragaria x ananassa FAN14G2221 PTHR23076//PTHR23076:SF60 - METALLOPROTEASE M41 FTSH // SUBFAMILY NOT NAMED Fvb6-1 + View
Fragaria x ananassa FAN02G2883 PTHR23076//PTHR23076:SF60 - METALLOPROTEASE M41 FTSH // SUBFAMILY NOT NAMED Fvb6-4 - View
Fragaria vesca FvH4_6g27780 PTHR23076//PTHR23076:SF60 - METALLOPROTEASE M41 FTSH // SUBFAMILY NOT NAMED Fvb6 - View
Lonicera japonica Lj8A99T67 GWHAAZE00000008 + View
Lonicera japonica Lj1A675G57 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_8_142340 Lsat_1_v8_lg_8 + View
Malus domestica MD17G1263600 FtsH extracellular protease family Chr17 + View
Malus domestica MD09G1234500 FtsH extracellular protease family Chr09 + View
Nicotiana tabacum Nitab4.5_0000249g0010 P-loop containing nucleoside triphosphate hydrolase, ATPase, AAA-type, core, ATPase, AAA-type, conserved site, Peptidase, FtsH, Peptidase M41, AAA+ ATPase domain Nitab4.5_0000249 + View
Petunia axillaris Peaxi162Scf00229g00412 ATP-dependent zinc metalloprotease FtsH Peaxi162Scf00229 + View
Petunia axillaris Peaxi162Scf00469g00627 ATP-dependent zinc metalloprotease FtsH Peaxi162Scf00469 - View
Punica granatum PGR042G2979 NC_045130.1 + View
Prunus persica Prupe.3G112700 Pp03 + View
Populus trichocarpa Potri.014G139500 PTHR23076//PTHR23076:SF60 - METALLOPROTEASE M41 FTSH // SUBFAMILY NOT NAMED Chr14 + View
Populus trichocarpa Potri.002G220366 PTHR23076//PTHR23076:SF60 - METALLOPROTEASE M41 FTSH // SUBFAMILY NOT NAMED Chr02 - View
Quercus lobata QL08p042510 8 - View
Rhododendron simsii Rhsim06G0127100 chr06 + View
Striga asiatica SGA_v2.0_scaffold4G02110 scaffold4 - View
Salvia bowleyana SalBow7G3505 GWHASIU00000005 - View
Sechium edule Sed0001406 LG04 + View
Solanum lycopersicum Solyc07g055320.4 ATP-dependent zinc metalloprotease ftsh chloroplastic-like (AHRD V3.3 *** A0A2K3N4C5_TRIPR) SL4.0ch07 - View
Schrenkiella parvula Sp4g13440 PTHR23076//PTHR23076:SF60 - METALLOPROTEASE M41 FTSH // SUBFAMILY NOT NAMED ch4-6 + View
Solanum pennellii Sopen07g026900 Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity. | VARIEGATED 2 (VAR2) | FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding | INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process | LOCATED IN: in 6 components | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH , ATPase, AAA+ type, core , ATPase, AAA-type, core , ATPase, AAA-type, conserved site , Peptidase M41 , Peptidase M41, FtsH extracellular | BEST Arabidopsis thaliana protein match is: FTSH protease 8 Spenn-ch07 + View
Solanum tuberosum PGSC0003DMG400017311 Chloroplast protease ST4.03ch07 - View
Selenicereus undatus Hund07766 Scaffold_33676 + View
Trochodendron aralioides TAR624G0516 group9 + View
Trochodendron aralioides TAR626G1830 group3 - View
Tarenaya hassleriana THA.LOC104826230 ATP-dependent zinc metalloprotease FTSH 2%2C chloroplastic NW_010967707.1 - View
Tripterygium wilfordii TWI23G1254 NC_052239.1 - View
Tripterygium wilfordii TWI59G0450 NC_052248.1 - View
Vaccinium macrocarpon vmacro12401 Similar to FTSH2: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic (Oryza sativa subsp. japonica OX%3D39947) chr11_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01020760001 chr12 + View