Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0036441 PREDICTED: peptide deformylase 1B, chloroplastic [Vitis vinifera] Contig340 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG11G14800 LG-11 + View
Acer truncatum Atru.chr6.2325 chr6 + View
Arabidopsis lyrata AL6G25430 scaffold_6 - View
Avicennia marina MSTRG.3294 ScioBoG_102836_HRSCAF_103072 - View
Aquilegia oxysepala Aqoxy3G01052 CHR03 + View
Arabidopsis thaliana AT5G14660 peptide deformylase 1B Encodes a peptide deformylase PDF1B. The crystal structure has been determined at a resolution of 0.24 nm (Biochem J%2C 2008%2C vol 413:417-427). peptide deformylase 1B (PDF1B)%3B FUNCTIONS IN: peptide deformylase activity%3B INVOLVED IN: translation%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Formylmethionine deformylase (InterPro:IPR000181)%3B BEST Arabidopsis thaliana protein match is: peptide deformylase 1A (TAIR:AT1G15390.1)%3B Has 11015 Blast hits to 11012 proteins in 2634 species: Archae - 4%3B Bacteria - 7821%3B Metazoa - 125%3B Fungi - 0%3B Plants - 121%3B Viruses - 2%3B Other Eukaryotes - 2942 (source: NCBI BLink). Chr5 - View
Amborella trichopoda ATR1091G073 AmTr_v1.0_scaffold00096 - View
Brassica napus C09p62480 C09 + View
Brassica napus A10p24010 A10 + View
Brassica rapa BraA10t44464Z A10 + View
Capsicum annuum CAN.G206.14 PGAv.1.6.scaffold206 - View
Cannabis sativa CANSAT64G2896 NC_044379.1 - View
Corylus avellana Haze_14694 Similar to PDF1B: Peptide deformylase 1B, chloroplastic/mitochondrial (Arabidopsis thaliana OX%3D3702) 5 + View
Citrus clementina Ciclev10016231m.g scaffold_2 + View
Carpinus fangiana Cfa007410 Cfa03 - View
Cardamine hirsuta CARHR198660 peptide deformylase 1B Chr6 + View
Carya illinoinensis CiPaw.03G040100 3.5.1.88 - Peptide deformylase / Polypeptide deformylase Chr03 + View
Citrullus lanatus ClCG10G014090 peptide deformylase 1B LENGTH=273 CG_Chr10 - View
Cucumis melo MELO3C009968.2 Peptide deformylase chr04 - View
Capsella rubella Carub.0006s1283 PTHR10458//PTHR10458:SF2 - PEPTIDE DEFORMYLASE // PEPTIDE DEFORMYLASE 1B, CHLOROPLASTIC/MITOCHONDRIAL scaffold_6 - View
Cucumis sativus L. CsaV3_3G042570 Peptide deformylase chr3 + View
Daucus carota DCAR_011234 hypothetical protein DCARv2_Chr3 + View
Davidia involucrata Dinv35082 GWHABJS00000012 + View
Durio zibethinus Duzib187G0986 NW_019167860.1 + View
Erigeron canadensis ECA238G0132 Conyza_canadensis_scaffold:6 + View
Eucalyptus grandis Eucgr.I01778 Chr09 - View
Erythranthe guttata Migut.K01380 scaffold_11 + View
Eutrema salsugineum Thhalv10014367m.g 3.5.1.88 - Peptide deformylase / Polypeptide deformylase scaffold_2 - View
Fragaria x ananassa FAN02G3346 3.5.1.88 - Peptide deformylase / Polypeptide deformylase Fvb6-4 + View
Fragaria x ananassa FAN14G3710 PTHR10458:SF2 - PEPTIDE DEFORMYLASE 1B, CHLOROPLASTIC/MITOCHONDRIAL Fvb6-1 - View
Fragaria x ananassa FAN09G4447 PTHR10458//PTHR10458:SF2 - PEPTIDE DEFORMYLASE // PEPTIDE DEFORMYLASE 1B, CHLOROPLASTIC/MITOCHONDRIAL Fvb6-2 - View
Fragaria vesca FvH4_6g50950 3.5.1.88 - Peptide deformylase / Polypeptide deformylase Fvb6 + View
Gossypium raimondii Gorai.011G095500 Chr11 - View
Lotus japonicus Lj1g0027893 PTHR10458:SF2 - PEPTIDE DEFORMYLASE 1B, CHLOROPLASTIC/MITOCHONDRIAL chr1 - View
Lonicera japonica Lj7A594G50 GWHAAZE00000007 + View
Magnolia biondii MBI16_g27082_MAGBIO AED:0.18 Chr16 - View
Malus domestica MD09G1030300 peptide deformylase 1B Chr09 - View
Malus domestica MD17G1032100 peptide deformylase 1B Chr17 - View
Nelumbo nucifera Nn4g22741 chr4 - View
Olea europaea Oeu043040.1 chr10 - View
Petunia axillaris Peaxi162Scf00129g01227 peptide deformylase 1B Peaxi162Scf00129 + View
Punica granatum PGR142G0249 NC_045128.1 + View
Prunus persica Prupe.3G287100 3.5.1.88 - Peptide deformylase / Polypeptide deformylase Pp03 + View
Populus trichocarpa Potri.001G346700 PTHR10458//PTHR10458:SF2 - PEPTIDE DEFORMYLASE // PEPTIDE DEFORMYLASE 1B, CHLOROPLASTIC/MITOCHONDRIAL Chr01 + View
Quercus lobata QL02p075892 CM012294 - View
Rosa chinensis RcHm_v2.0_Chr2g0172351 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim10G0019600 chr10 - View
Striga asiatica SGA_v2.0_scaffold30G12428 scaffold30 - View
Salvia bowleyana SalBow7G1007 GWHASIU00000005 + View
Solanum lycopersicum Solyc02g086680.4 peptide deformylase AF250958 SL4.0ch02 - View
Schrenkiella parvula Sp6g29380 3.5.1.88 - Peptide deformylase / Polypeptide deformylase ch6-6 + View
Solanum pennellii Sopen02g031440 Encodes a peptide deformylase PDF1B. The crystal structure has been determined at a resolution of 0.24 nm . | peptide deformylase 1B (PDF1B) | FUNCTIONS IN: peptide deformylase activity | INVOLVED IN: translation | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Formylmethionine deformylase | BEST Arabidopsis thaliana protein match is: peptide deformylase 1A Spenn-ch02 - View
Solanum tuberosum PGSC0003DMG400000518 Peptide deformylase 1B, chloroplastic ST4.03ch02 + View
Trochodendron aralioides TAR622G0841 group8 + View
Trochodendron aralioides TAR629G1761 group0 + View
Theobroma cacao Thecc.04G012100 Polypeptide deformylase Chromosome_4 + View
Tarenaya hassleriana THA.LOC104822396 peptide deformylase 1B%2C chloroplastic/mitochondrial NW_010966665.1 + View
Vaccinium macrocarpon vmacro05842 Similar to PDF1B: Peptide deformylase 1B, chloroplastic (Solanum lycopersicum OX%3D4081) chr12_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01032450001 chr14 - View