Gene: AT5G14660
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G14660
- Transcript Identifier AT5G14660.1
- Gene Type Coding gene
- Location Chr5 : 4727129-4728671 : negative
Gene Family Information
- ID HOM05D006109
- #Genes/#Species 129/94
- Phylogenetic origin
- ID ORTHO05D007647
- #Genes/#Species 128/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G14660.1
- symbol PDF1B
- Alias ATDEF2,DEF2
- uniprot Q9FUZ2
Descriptions
- Description peptide deformylase 1B
- Computational description peptide deformylase 1B (PDF1B); FUNCTIONS IN: peptide deformylase activity; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Formylmethionine deformylase (InterPro:IPR000181); BEST Arabidopsis thaliana protein match is: peptide deformylase 1A (TAIR:AT1G15390.1); Has 11015 Blast hits to 11012 proteins in 2634 species: Archae - 4; Bacteria - 7821; Metazoa - 125; Fungi - 0; Plants - 121; Viruses - 2; Other Eukaryotes - 2942 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006412 | IEA | GOA Database | translation | |
| GO:0018206 | IBA | Gene Ontology | peptidyl-methionine modification | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042586 | IEA | GOA Database | peptide deformylase activity | |
| GO:0042586 | IDA | Gene Ontology | peptide deformylase activity | 2 |
| GO:0042586 | IEA | InterPro | peptide deformylase activity | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009570 | IEA | GOA Database | chloroplast stroma | |
| GO:0009507 | IDA IEA | GOA Database | chloroplast | |
| GO:0009507 | HDA ISM, IBA | Gene Ontology | chloroplast | 1 3 |
| GO:0009536 | IEA | GOA Database | plastid | |
| GO:0009536 | HDA | Gene Ontology | plastid | 4 |
| GO:0005739 | IEA | GOA Database | mitochondrion | |
| GO:0005739 | IBA | Gene Ontology | mitochondrion | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 17.7.6.1 | Protein biosynthesis.organelle machinery.peptide deformylation.formylmethionine deformylase (PDF) |