Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr9.2153 chr9 - View
Actinidia chinensis Actinidia14580 Lachesis_group6 + View
Actinidia chinensis Actinidia28364 Lachesis_group23 + View
Arabidopsis lyrata AL7G48050 scaffold_7 - View
Avicennia marina MSTRG.11971 ScioBoG_17730_HRSCAF_17811 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ZIDD3N PTHR11274:SF0 - TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX HELICASE XPB SUBUNIT arahy.Tifrunner.gnm1.Arahy.13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.U109MR PTHR11274:SF0 - TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX HELICASE XPB SUBUNIT arahy.Tifrunner.gnm1.Arahy.03 - View
Arabidopsis thaliana AT5G41360 homolog of Xeroderma pigmentosum complementation group B 2 Encodes XPB2%2C a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2%2C with high similarity to each other). XPB proteins are involved in both DNA repair and transcription%2C they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle%2C Northern blot analyses suggest that light modulates the expression level of both XPB copies. homolog of Xeroderma pigmentosum complementation group B 2 (XPB2)%3B FUNCTIONS IN: in 7 functions%3B INVOLVED IN: response to UV-B%2C N-terminal protein myristoylation%3B EXPRESSED IN: whole plant%3B EXPRESSED DURING: seedling growth%3B CONTAINS InterPro DOMAIN/s: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit (InterPro:IPR006935)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C Xeroderma pigmentosum group B protein (XP-B) (InterPro:IPR001161)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: homolog of xeroderma pigmentosum complementation group B 1 (TAIR:AT5G41370.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 + View
Brassica carinata BcaB06g27616 ChrB06 + View
Brassica carinata BcaC02g08964 ChrC02 - View
Brassica napus A04p14500 A04 + View
Brassica napus C04p48400 C04 + View
Capsicum annuum CAN.G532.8 PGAv.1.6.scaffold532 + View
Cicer arietinum L. Ca_10937_v3 Ca_LG4_v3 + View
Corylus avellana Haze_08814 Similar to XPB1: General transcription and DNA repair factor IIH helicase subunit XPB1 (Arabidopsis thaliana OX%3D3702) 4 + View
Coffea canephora Cc08_g15010 DNA repair helicase XPB1 chr8 + View
Citrus clementina Ciclev10019088m.g scaffold_3 - View
Carpinus fangiana Cfa012202 Cfa05 - View
Cardamine hirsuta CARHR212960 Rad25/xp-B DNA repair helicase, putative Chr7 - View
Carya illinoinensis CiPaw.12G091100 K10843 - DNA excision repair protein ERCC-3 (ERCC3, XPB) Chr12 - View
Citrullus lanatus ClCG01G002520 TFIIH basal transcription factor complex helicase XPB subunit-like CG_Chr01 - View
Cucumis melo MELO3C005694.2 DNA repair helicase XPB1 chr09 + View
Corchorus olitorius COL.COLO4_34498 Helicase Ercc3 AWUE01022401.1 + View
Carica papaya Cpa.g.sc180.13 supercontig_180 + View
Capsella rubella Carub.0007s3411 K10843 - DNA excision repair protein ERCC-3 (ERCC3, XPB) scaffold_7 - View
Cucumis sativus L. CsaV3_5G002620 DNA repair helicase chr5 - View
Davidia involucrata Dinv38921 GWHABJS00000003 - View
Davidia involucrata Dinv37619 GWHABJS00000017 - View
Durio zibethinus Duzib205G0291 NW_019168381.1 + View
Durio zibethinus Duzib084G0223 NW_019167827.1 + View
Erigeron canadensis ECA246G2088 Conyza_canadensis_scaffold:8 - View
Eucalyptus grandis Eucgr.E00638 Chr05 + View
Erythranthe guttata Migut.E01191 scaffold_5 + View
Fragaria x ananassa FAN18G3267 PTHR11274//PTHR11274:SF0 - RAD25/XP-B DNA REPAIR HELICASE // TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX HELICASE XPB SUBUNIT Fvb5-1 - View
Fragaria x ananassa FAN13G0786 K10843 - DNA excision repair protein ERCC-3 (ERCC3, XPB) Fvb5-2 + View
Fragaria x ananassa FAN04G2979 K10843 - DNA excision repair protein ERCC-3 (ERCC3, XPB) Fvb5-4 + View
Fragaria x ananassa FAN08G0848 K10843 - DNA excision repair protein ERCC-3 (ERCC3, XPB) Fvb5-3 - View
Fragaria vesca FvH4_5g02840 K10843 - DNA excision repair protein ERCC-3 (ERCC3, XPB) Fvb5 + View
Gossypium hirsutum Gohir.D03G149600 K10843 - DNA excision repair protein ERCC-3 (ERCC3, XPB) D03 - View
Gossypium hirsutum Gohir.A11G022800 K10843 - DNA excision repair protein ERCC-3 (ERCC3, XPB) A11 + View
Gossypium hirsutum Gohir.A03G019400 PF00271//PF04851//PF13625 - Helicase conserved C-terminal domain (Helicase_C) // Type III restriction enzyme, res subunit (ResIII) // Helicase conserved C-terminal domain (Helicase_C_3) A03 + View
Gossypium hirsutum Gohir.D11G022333 PF04851//PF13625//PF16203 - Type III restriction enzyme, res subunit (ResIII) // Helicase conserved C-terminal domain (Helicase_C_3) // ERCC3/RAD25/XPB C-terminal helicase (ERCC3_RAD25_C) D11 + View
Glycine max Glyma.08G016400 K10843 - DNA excision repair protein ERCC-3 (ERCC3, XPB) Gm08 + View
Glycine max Glyma.05G209700 K10843 - DNA excision repair protein ERCC-3 (ERCC3, XPB) Gm05 + View
Gossypium raimondii Gorai.007G023800 Chr07 + View
Gossypium raimondii Gorai.003G156900 Chr03 - View
Helianthus annuus HanXRQChr17g0533461 Probable homolog of xeroderma pigmentosum complementation group B 1 HanXRQChr17 - View
Lupinus albus Lalb_Chr16g0390181 K10843 - DNA excision repair protein ERCC-3 (ERCC3, XPB) Lalb_Chr16 + View
Lupinus albus Lalb_Chr05g0224631 K10843 - DNA excision repair protein ERCC-3 (ERCC3, XPB) Lalb_Chr05 - View
Lotus japonicus Lj4g0015025 K10843 - DNA excision repair protein ERCC-3 (ERCC3, XPB) chr4 - View
Lonicera japonica Lj8A218G25 GWHAAZE00000008 - View
Lonicera japonica Lj2C182G1 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_3_6121 Lsat_1_v8_lg_3 + View
Malus domestica MD06G1087900 homolog of xeroderma pigmentosum complementation group B 1 Chr06 + View
Manihot esculenta Manes.02G021700 Chromosome02 + View
Medicago truncatula Medtr8g098675 DNA repair helicase XPB1 chr8 + View
Nelumbo nucifera Nn6g33339 chr6 - View
Petunia axillaris Peaxi162Scf00074g02032 TFIIH basal transcription factor complex helicase XPB subunit Peaxi162Scf00074 - View
Punica granatum PGR042G0359 NC_045130.1 - View
Prunus persica Prupe.5G104000 K10843 - DNA excision repair protein ERCC-3 (ERCC3, XPB) Pp05 + View
Pisum sativum Psat7g031680 Xeroderma pigmentosum group B protein signature chr7LG7 - View
Populus trichocarpa Potri.001G101300 K10843 - DNA excision repair protein ERCC-3 (ERCC3, XPB) Chr01 - View
Phaseolus vulgaris Phvul.002G291500 Chr02 + View
Quercus lobata QL12p032410 12 - View
Rosa chinensis RcHm_v2.0_Chr7g0197061 RcHm_v2.0_Chr7 - View
Rhododendron simsii Rhsim07G0088600 chr07 - View
Rhododendron simsii Rhsim02G0234100 chr02 + View
Salix brachista Sabra01G0076300 GWHAAZH00000001 - View
Simmondsia chinensis Sc07g0009820 GWHAASQ00000007 + View
Sechium edule Sed0019074 LG01 - View
Solanum lycopersicum Solyc08g081340.4 DNA repair helicase (AHRD V3.3 *** A0A2U1Q9X8_ARTAN) SL4.0ch08 + View
Schrenkiella parvula SpUn0010_0060 K10843 - DNA excision repair protein ERCC-3 (ERCC3, XPB) un0010 - View
Solanum pennellii Sopen08g029660 Encodes XPB1, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies. | homolog of xeroderma pigmentosum complementation group B 1 (XPB1) | FUNCTIONS IN: in 7 functions | INVOLVED IN: response to UV, response to toxin | LOCATED IN: nucleus, cytoplasm | EXPRESSED IN: whole plant, male gametophyte, pollen tube | EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth | CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit , DEAD-like helicase, N-terminal , Xeroderma pigmentosum group B protein (XP-B) , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: homolog of Xeroderma pigmentosum complementation group B 2 Spenn-ch08 + View
Solanum tuberosum PGSC0003DMG400012332 Rad25/xp-B DNA repair helicase ST4.03ch08 + View
Trochodendron aralioides TAR636G0201 group1 - View
Theobroma cacao Thecc.03G282800 Xeroderma pigmentosum complementation group B 2 Chromosome_3 + View
Tarenaya hassleriana THA.LOC104817891 DNA repair helicase XPB1 NW_010960187.1 - View
Trifolium pratense TPR.G12826 Tp57577_TGAC_v2_LG3 + View
Tripterygium wilfordii TWI81G0502 NC_052251.1 + View
Tripterygium wilfordii TWI15G1203 NC_052247.1 + View
Vaccinium macrocarpon vmacro11393 Similar to XPB1: General transcription and DNA repair factor IIH helicase subunit XPB1 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0251G2080 CM024069.1 + View
Vitis vinifera GSVIVG01019392001 chr2 + View