Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G2110 LG-2 + View
Acer truncatum Atru.chr12.1813 chr12 + View
Actinidia chinensis Actinidia24515 Contig01142 + View
Arabidopsis lyrata AL2G19270 scaffold_2 + View
Avicennia marina MSTRG.26919 ScioBoG_8578_HRSCAF_8617 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.TJCL76 K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) arahy.Tifrunner.gnm1.Arahy.13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.N044W1 K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) arahy.Tifrunner.gnm1.Arahy.03 - View
Arabidopsis thaliana AT1G64860 sigma factor A Subunit of chloroplast RNA polymerase%2C confers the ability to recognize promoter sequences on the core enzyme sigma factor A (SIGA)%3B CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor%2C region 2 (InterPro:IPR013325)%2C Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C RNA polymerase sigma-70 region 3 (InterPro:IPR007624)%2C RNA polymerase sigma-70 (InterPro:IPR014284)%2C RNA polymerase sigma factor%2C region 3/4 (InterPro:IPR013324)%2C RNA polymerase sigma-70 factor (InterPro:IPR000943)%2C RNA polymerase sigma-70 region 2 (InterPro:IPR007627)%2C RNA polymerase sigma-70 region 4 (InterPro:IPR007630)%3B BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1)%3B Has 23164 Blast hits to 23156 proteins in 2779 species: Archae - 0%3B Bacteria - 16620%3B Metazoa - 0%3B Fungi - 0%3B Plants - 234%3B Viruses - 18%3B Other Eukaryotes - 6292 (source: NCBI BLink). Chr1 + View
Capsicum annuum CAN.G732.31 PGAv.1.6.scaffold732 + View
Cannabis sativa CANSAT21G0704 NC_044374.1 + View
Corylus avellana Haze_00346 Similar to SIGA: RNA polymerase sigma factor sigA (Arabidopsis thaliana OX%3D3702) 1 + View
Coffea canephora Cc02_g00040 Putative RNA polymerase sigma-B factor chr2 + View
Citrus clementina Ciclev10031289m.g scaffold_4 - View
Carpinus fangiana Cfa016111 Cfa06 - View
Cardamine hirsuta CARHR056270 RNA polymerase sigma factor 1 Chr2 + View
Carya illinoinensis CiPaw.05G210700 K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) Chr05 + View
Carica papaya Cpa.g.sc43.154 supercontig_43 - View
Daucus carota DCAR_020435 hypothetical protein DCARv2_Chr6 + View
Davidia involucrata Dinv17236 GWHABJS00000009 + View
Durio zibethinus Duzib177G0786 NW_019168004.1 - View
Durio zibethinus Duzib128G2026 NW_019168481.1 + View
Eucalyptus grandis Eucgr.A02994 Chr01 - View
Erythranthe guttata Migut.H00003 scaffold_8 + View
Fragaria x ananassa FAN03G2928 K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) Fvb7-3 - View
Fragaria vesca FvH4_7g34280 K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) Fvb7 + View
Gossypium hirsutum Gohir.A11G221400 K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) A11 - View
Gossypium hirsutum Gohir.D08G239800 PTHR30603//PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGA D08 + View
Gossypium hirsutum Gohir.A08G221630 PTHR30603//PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGA A08 + View
Gossypium hirsutum Gohir.D11G234800 K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) D11 - View
Glycine max Glyma.12G013300 K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) Gm12 + View
Gossypium raimondii Gorai.007G247500 Chr07 - View
Gossypium raimondii Gorai.004G255000 Chr04 + View
Lupinus albus Lalb_Chr19g0140121 K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) Lalb_Chr19 - View
Lupinus albus Lalb_Chr01g0000711 K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) Lalb_Chr01 + View
Lotus japonicus Lj3g0014992 K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) chr3 + View
Lonicera japonica Lj3C883T3 GWHAAZE00000003 + View
Malus domestica MD07G1311500 sigma factor A Chr07 - View
Manihot esculenta Manes.09G130800 Chromosome09 - View
Nicotiana tabacum Nitab4.5_0000021g0930 RNA polymerase sigma-70 region 4, RNA polymerase sigma-70 region 3, RNA polymerase sigma-70 region 2, RNA polymerase sigma-70, Winged helix-turn-helix DNA-binding domain, RNA polymerase sigma factor, region 2, RNA polymerase sigma factor, region 3/4, RNA polymerase sigma-70 like domain Nitab4.5_0000021 - View
Olea europaea Oeu028991.1 scaffold2412 - View
Petunia axillaris Peaxi162Scf00516g00423 Homeodomain-interacting protein kinase 2 Peaxi162Scf00516 + View
Prunus persica Prupe.2G329700 Pp02 + View
Populus trichocarpa Potri.019G043300 K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) Chr19 - View
Populus trichocarpa Potri.013G075400 K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) Chr13 + View
Phaseolus vulgaris Phvul.011G016400 K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) Chr11 + View
Rosa chinensis RcHm_v2.0_Chr1g0384631 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim03G0225500 chr03 - View
Salix brachista Sabra19G0054000 GWHAAZH00000019 - View
Salix brachista Sabra13G0064900 GWHAAZH00000013 + View
Sechium edule Sed0007466 LG01 - View
Sechium edule Sed0000344 LG05 - View
Solanum lycopersicum Solyc03g097320.3 RNA polymerase sigma factor sigA (AHRD V3.3 *** A0A2G2VB29_CAPBA) SL4.0ch03 - View
Solanum pennellii Sopen03g028090 Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme | sigma factor A (SIGA) | CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 3/4 , RNA polymerase sigma factor, region 2 , RNA polymerase sigma-70 region 3 , RNA polymerase sigma-70 , RNA polymerase sigma-70 factor , RNA polymerase sigma-70 region 2 | BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 . Spenn-ch03 - View
Solanum tuberosum PGSC0003DMG400026491 Sigma factor ST4.03ch03 - View
Trochodendron aralioides TAR375G0320 group15 + View
Theobroma cacao Thecc.05G227300 Sigma factor A Chromosome_5 - View
Tripterygium wilfordii TWI32G0575 NC_052254.1 - View
Tripterygium wilfordii TWI60G0079 NC_052246.1 + View
Vigna mungo VMungo1127G0435 CM024076.1 + View
Vitis vinifera GSVIVG01024261001 chr16 + View