Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0047081 PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Vitis vinifera] Chr10 + View
CSS0005769 unnamed protein product [Vitis vinifera] Chr10 + View
CSS0043356 PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Vitis vinifera] Chr4 - View
CSS0015436 brca1 associated ring domain, putative [Ricinus communis] Chr13 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G16320 LG-4 - View
Acer truncatum Atru.chr1.670 chr1 + View
Actinidia chinensis Actinidia25020 Lachesis_group22 + View
Avicennia marina MSTRG.8814 ScioBoG_11560_HRSCAF_11609 + View
Amaranthus hybridus Ah.07g207960 AmaHy_arrow1_Scaffold_7 - View
Aquilegia oxysepala Aqoxy7G00693 CHR07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.7W4W3Z K01166 - ribonuclease T2 [EC:3.1.27.1] (E3.1.27.1) arahy.Tifrunner.gnm1.Arahy.15 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.JX714U PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) arahy.Tifrunner.gnm1.Arahy.03 - View
Arabidopsis thaliana AT4G25270 Tetratricopeptide repeat (TPR)-like superfamily protein Encodes OTP70%2C a pentatricopeptide repeat protein of the E subgroup involved in splicing of the plastid transcript rpoC1. Tetratricopeptide repeat (TPR)-like superfamily protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G46790.1)%3B Has 37561 Blast hits to 13487 proteins in 239 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 116%3B Fungi - 110%3B Plants - 36880%3B Viruses - 0%3B Other Eukaryotes - 449 (source: NCBI BLink). Chr4 - View
Brassica napus A01p16560 A01 - View
Brassica rapa BraA01t01611Z A01 - View
Beta vulgaris EL10Ac3g05821 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr3_EL10_PGA_scaffold7 + View
Corylus avellana Haze_13845 Similar to PCMP-E53: Pentatricopeptide repeat-containing protein At4g25270, chloroplastic (Arabidopsis thaliana OX%3D3702) 5 + View
Coffea canephora Cc02_g04090 Pentatricopeptide repeat-containing protein At4g25270, chloroplastic chr2 + View
Citrus clementina Ciclev10004726m.g scaffold_9 - View
Citrus clementina Ciclev10023562m.g scaffold_3 + View
Ceratophyllum demersum CDE11G0656 9 - View
Carpinus fangiana Cfa012026 Cfa05 + View
Carpinus fangiana Cfa008213 Cfa03 - View
Cardamine hirsuta CARHR232680 Pentatricopeptide repeat-containing protein, putative Chr7 - View
Carya illinoinensis CiPaw.03G095600 K13800 - UMP-CMP kinase (CMPK1, UMPK) Chr03 - View
Carya illinoinensis CiPaw.04G058000 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr04 + View
Cucumis melo MELO3C031784.2 Pentatricopeptide repeat-containing protein chr06 - View
Carica papaya Cpa.g.sc3.302 supercontig_3 + View
Chenopodium quinoa AUR62016121 PCMP-E52: Pentatricopeptide repeat-containing protein At4g39530 C_Quinoa_Scaffold_3256 + View
Cucumis sativus L. CsaV3_3G016240 Pentatricopeptide repeat-containing protein chr3 - View
Davidia involucrata Dinv43701 GWHABJS00000016 - View
Davidia involucrata Dinv28553 GWHABJS00000004 + View
Erigeron canadensis ECA238G3687 Conyza_canadensis_scaffold:6 - View
Erigeron canadensis ECA240G3786 Conyza_canadensis_scaffold:5 + View
Erythranthe guttata Migut.F00457 scaffold_6 + View
Fragaria x ananassa FAN06G3109 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb7-2 - View
Fragaria x ananassa FAN06G1597 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb7-2 + View
Fragaria x ananassa FAN10G3575 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb7-1 - View
Fragaria x ananassa FAN03G1997 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb7-3 + View
Fragaria vesca FvH4_7g27870 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb7 - View
Glycine max Glyma.09G232200 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Gm09 - View
Glycine max Glyma.09G154166 PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Gm09 + View
Hydrangea macrophylla Hma1.2p1_0654F.1_g196550 Hma1.2p1_0654F.1 + View
Lupinus albus Lalb_Chr23g0276491 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Lalb_Chr23 + View
Lupinus albus Lalb_Chr01g0000231 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Lalb_Chr01 + View
Lotus japonicus Lj2g0004281 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) chr2 + View
Lonicera japonica Lj8C40T4 GWHAAZE00000008 + View
Magnolia biondii MBI15_g46856_MAGBIO AED:0.34 Chr15 + View
Malus domestica MD07G1255900 Tetratricopeptide repeat (TPR)-like superfamily protein Chr07 - View
Manihot esculenta Manes.06G136400 Chromosome06 - View
Nelumbo nucifera Nn4g26337 chr4 - View
Olea europaea Oeu022543.1 chr1 + View
Olea europaea Oeu042570.1 chr12 - View
Olea europaea Oeu044194.1 chr1 + View
Punica granatum PGR142G2121 NC_045128.1 + View
Punica granatum PGR042G0556 NC_045130.1 - View
Prunus persica Prupe.5G080600 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Pp05 + View
Prunus persica Prupe.2G280000 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Pp02 - View
Papaver somniferum PSO478G0308 NC_039361.1 + View
Populus trichocarpa Potri.015G128800 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr15 - View
Phaseolus vulgaris Phvul.004G127800 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr04 + View
Phaseolus vulgaris Phvul.011G004900 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr11 + View
Quercus lobata QL09p019182 9 + View
Quercus lobata QL02p080111 CM012294 - View
Quercus lobata QL12p039946 12 - View
Rhododendron simsii Rhsim03G0155800 chr03 - View
Rhododendron simsii Rhsim11G0089000 chr11 + View
Striga asiatica SGA_v2.0_scaffold2G01181 scaffold2 + View
Striga asiatica SGA_v2.0_scaffold17G08113 scaffold17 - View
Salix brachista Sabra15G0142100 GWHAAZH00000015 - View
Sechium edule Sed0011850 LG13 + View
Solanum lycopersicum Solyc06g035600.3 Pentatricopeptide repeat (AHRD V3.3 *** A0A200QK42_9MAGN) SL4.0ch06 + View
Schrenkiella parvula Sp5g14350 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) ch5-1 + View
Schrenkiella parvula Sp7g23290 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) ch7-4 - View
Solanum pennellii Sopen03g003310 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein Spenn-ch03 + View
Trochodendron aralioides TAR374G0143 group12 - View
Theobroma cacao Thecc.03G158300 Chromosome_3 - View
Tarenaya hassleriana THA.LOC104811517 pentatricopeptide repeat-containing protein At4g25270%2C chloroplastic NW_010965372.1 + View
Tarenaya hassleriana THA.LOC104825049 pentatricopeptide repeat-containing protein At2g41080 NW_010966986.1 - View
Tripterygium wilfordii TWI39G0767 The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon NC_052250.1 - View
Vigna mungo VMungo0464G1193 CM024077.1 + View
Vitis vinifera GSVIVG01018597001 chr16 - View