Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0001712 PREDICTED: protein SHORT-ROOT isoform X1 [Vitis vinifera] Chr1 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr3.1010 chr3 + View
Actinidia chinensis Actinidia16427 Lachesis_group25 + View
Avicennia marina MSTRG.15351 ScioBoG_19538_HRSCAF_19626 - View
Avicennia marina MSTRG.2819 ScioBoG_102835_HRSCAF_103059 - View
Avicennia marina MSTRG.23671 ScioBoG_3895_HRSCAF_3912 - View
Amaranthus hybridus Ah.02g125410 AmaHy_arrow1_Scaffold_2 - View
Aquilegia oxysepala Aqoxy6G02611 CHR06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.GYJ6B7 PTHR31636:SF9 - PROTEIN SHORT-ROOT arahy.Tifrunner.gnm1.Arahy.01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.T0P5W2 PTHR31636:SF9 - PROTEIN SHORT-ROOT arahy.Tifrunner.gnm1.Arahy.05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.8N5BV1 PTHR31636:SF9 - PROTEIN SHORT-ROOT arahy.Tifrunner.gnm1.Arahy.15 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.TICU69 PTHR31636:SF9 - PROTEIN SHORT-ROOT arahy.Tifrunner.gnm1.Arahy.11 - View
Arabidopsis thaliana AT1G66350 RGA-like 1 Negative regulator of GA responses%2C member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. RGL1 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Involved in flower and fruit development. RGA-like 1 (RGL1)%3B CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA%2C N-terminal (InterPro:IPR021914)%2C Transcription factor GRAS (InterPro:IPR005202)%3B BEST Arabidopsis thaliana protein match is: RGA-like 2 (TAIR:AT3G03450.1)%3B Has 2708 Blast hits to 2634 proteins in 311 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2704%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT3G03450 RGA-like 2 Encodes a DELLA protein%2C a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development. RGA-like 2 (RGL2)%3B CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA%2C N-terminal (InterPro:IPR021914)%2C Transcription factor GRAS (InterPro:IPR005202)%3B BEST Arabidopsis thaliana protein match is: RGA-like protein 3 (TAIR:AT5G17490.1)%3B Has 2697 Blast hits to 2637 proteins in 314 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2690%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink). Chr3 - View
Beta vulgaris EL10Ac6g15619 PTHR31636:SF9 - PROTEIN SHORT-ROOT Chr6_EL10_PGA_scaffold0 - View
Cicer arietinum L. Ca_22106_v3 Ca_LG7_v3 - View
Cicer arietinum L. Ca_24693_v3 Ca_LG8_v3 - View
Corylus avellana Haze_15283 Similar to SHR: Protein SHORT-ROOT (Arabidopsis thaliana OX%3D3702) 11 - View
Corylus avellana Haze_14248 Similar to GAI: DELLA protein GAI (Gossypium hirsutum OX%3D3635) 5 - View
Citrus clementina Ciclev10025470m.g scaffold_7 - View
Ceratophyllum demersum CDE07G0887 5 + View
Carpinus fangiana Cfa007824 Cfa03 + View
Cardamine hirsuta CARHR058250 GAI-like protein 1 Chr2 + View
Carya illinoinensis CiPaw.03G070900 PTHR31636:SF47 - DELLA PROTEIN RGL1-RELATED Chr03 - View
Carya illinoinensis CiPaw.01G004500 PTHR31636//PTHR31636:SF9 - FAMILY NOT NAMED // PROTEIN SHORT-ROOT Chr01 - View
Carya illinoinensis CiPaw.02G002600 PTHR31636//PTHR31636:SF9 - FAMILY NOT NAMED // PROTEIN SHORT-ROOT Chr02 - View
Citrullus lanatus ClCG03G008630 GAI-like protein CG_Chr03 + View
Cucumis melo MELO3C022854.2 DELLA protein GAI-like chr09 - View
Corchorus olitorius COL.COLO4_11577 Transcription factor GRAS AWUE01014716.1 + View
Carica papaya Cpa.g.sc6.17 supercontig_6 - View
Carica papaya Cpa.g.sc116.43 supercontig_116 - View
Chenopodium quinoa AUR62040238 SHR: Protein SHORT-ROOT C_Quinoa_Scaffold_4447 - View
Davidia involucrata Dinv19029 GWHABJS00000014 + View
Davidia involucrata Dinv28215 GWHABJS00000012 - View
Davidia involucrata Dinv04049 GWHABJS00000021 + View
Durio zibethinus Duzib264G0242 NW_019167960.1 - View
Durio zibethinus Duzib147G0275 NW_019168470.1 - View
Durio zibethinus Duzib187G1637 NW_019167860.1 - View
Erigeron canadensis ECA246G2763 Conyza_canadensis_scaffold:8 - View
Eucalyptus grandis Eucgr.G02163 Chr07 + View
Eucalyptus grandis Eucgr.I00704 Chr09 - View
Eucalyptus grandis Eucgr.J01594 Chr10 - View
Erythranthe guttata Migut.H00348 scaffold_8 - View
Eutrema salsugineum Thhalv10018436m.g K14494 - DELLA protein (DELLA) scaffold_9 + View
Fragaria x ananassa FAN23G0064 PTHR31636//PTHR31636:SF9 - FAMILY NOT NAMED // PROTEIN SHORT-ROOT Fvb1-3 + View
Fragaria x ananassa FAN28G0549 PTHR31636:SF9 - PROTEIN SHORT-ROOT Fvb1-1 - View
Fragaria x ananassa FAN19G2122 PTHR31636//PTHR31636:SF9 - FAMILY NOT NAMED // PROTEIN SHORT-ROOT Fvb1-4 + View
Fragaria x ananassa FAN26G0355 PTHR31636:SF9 - PROTEIN SHORT-ROOT Fvb1-2 + View
Fragaria vesca FvH4_1g17690 PTHR31636:SF9 - PROTEIN SHORT-ROOT Fvb1 + View
Gossypium hirsutum Gohir.A11G214900 PTHR31636:SF9 - PROTEIN SHORT-ROOT A11 - View
Gossypium hirsutum Gohir.D12G075600 PTHR31636:SF9 - PROTEIN SHORT-ROOT D12 - View
Gossypium hirsutum Gohir.A11G205451 PTHR31636//PTHR31636:SF38 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 21-RELATED A11 + View
Gossypium hirsutum Gohir.D03G028800 PTHR31636:SF9 - PROTEIN SHORT-ROOT D03 + View
Gossypium hirsutum Gohir.A02G151600 PTHR31636:SF9 - PROTEIN SHORT-ROOT A02 - View
Glycine max Glyma.11G047700 PTHR31636:SF9 - PROTEIN SHORT-ROOT Gm11 - View
Glycine max Glyma.11G216500 PTHR31636//PTHR31636:SF47 - FAMILY NOT NAMED // DELLA PROTEIN RGL1-RELATED Gm11 + View
Glycine max Glyma.01G194200 PTHR31636:SF9 - PROTEIN SHORT-ROOT Gm01 + View
Glycine max Glyma.17G160800 PTHR31636:SF9 - PROTEIN SHORT-ROOT Gm17 - View
Gossypium raimondii Gorai.003G030400 Chr03 + View
Lupinus albus Lalb_Chr05g0213701 PTHR31636//PTHR31636:SF9 - FAMILY NOT NAMED // PROTEIN SHORT-ROOT Lalb_Chr05 + View
Lupinus albus Lalb_Chr10g0104431 PTHR31636//PTHR31636:SF47 - FAMILY NOT NAMED // DELLA PROTEIN RGL1-RELATED Lalb_Chr10 + View
Lupinus albus Lalb_Chr09g0323601 PTHR31636//PTHR31636:SF9 - FAMILY NOT NAMED // PROTEIN SHORT-ROOT Lalb_Chr09 + View
Lupinus albus Lalb_Chr18g0053431 K14494 - DELLA protein (DELLA) Lalb_Chr18 - View
Lotus japonicus Lj2g0006824 PTHR31636//PTHR31636:SF9 - FAMILY NOT NAMED // PROTEIN SHORT-ROOT chr2 - View
Lonicera japonica Lj4P163T26 GWHAAZE00000004 + View
Malus domestica MD09G1264800 RGA-like 2 Chr09 + View
Malus domestica MD02G1185900 GRAS family transcription factor Chr02 + View
Manihot esculenta Manes.13G111600 Chromosome13 - View
Manihot esculenta Manes.02G075900 Chromosome02 - View
Manihot esculenta Manes.12G114100 Chromosome12 + View
Nicotiana tabacum Nitab4.5_0000142g0030 Transcription factor GRAS Nitab4.5_0000142 + View
Olea europaea Oeu017644.1 scaffold1737 - View
Petunia axillaris Peaxi162Scf00548g00063 GRAS family transcription factor Peaxi162Scf00548 + View
Punica granatum PGR042G0080 NC_045130.1 + View
Punica granatum PGR004G0765 NC_045131.1 - View
Prunus persica Prupe.6G220800 PTHR31636:SF9 - PROTEIN SHORT-ROOT Pp06 - View
Papaver somniferum PSO675G0949 NC_039358.1 - View
Papaver somniferum PSO541G4523 NC_039363.1 - View
Phaseolus vulgaris Phvul.002G010700 PTHR31636:SF9 - PROTEIN SHORT-ROOT Chr02 - View
Phaseolus vulgaris Phvul.003G235000 PTHR31636:SF9 - PROTEIN SHORT-ROOT Chr03 - View
Rosa chinensis RcHm_v2.0_Chr2g0108031 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim08G0093500 chr08 - View
Salvia bowleyana SalBow5G2500 GWHASIU00000003 + View
Salvia bowleyana SalBow5G4546 GWHASIU00000003 + View
Salix brachista Sabra10G0080900 GWHAAZH00000010 + View
Sechium edule Sed0013160 LG01 + View
Solanum lycopersicum Solyc02g092370.1 Transcription factor GRAS (AHRD V3.3 *** A0A200QN05_9MAGN) SL4.0ch02 - View
Schrenkiella parvula Sp5g21380 K14494 - DELLA protein (DELLA) ch5-5 + View
Solanum pennellii Sopen02g036920 Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains. | SHORT ROOT (SHR) | CONTAINS InterPro DOMAIN/s: Transcription factor GRAS | BEST Arabidopsis thaliana protein match is: GRAS family transcription factor Spenn-ch02 - View
Solanum tuberosum PGSC0003DMG400021444 SHORT-ROOT protein ST4.03ch02 - View
Trochodendron aralioides TAR371G0673 group13 + View
Trochodendron aralioides TAR374G1383 group12 - View
Trochodendron aralioides TAR622G1258 group8 + View
Trochodendron aralioides TAR381G1336 group11 + View
Theobroma cacao Thecc.04G117200 Chromosome_4 + View
Tarenaya hassleriana THA.LOC104805615 DELLA protein RGL1 NW_010961290.1 - View
Tarenaya hassleriana THA.LOC104822321 DELLA protein RGL1-like NW_010960187.1 + View
Trifolium pratense TPR.G34859 Tp57577_TGAC_v2_LG2 - View
Tripterygium wilfordii TWI53G1653 NC_052244.1 + View
Vigna mungo VMungo1383G2863 CM024070.1 + View
Vigna mungo VMungo0251G1074 CM024069.1 - View
Vigna mungo VMungo1215G1502 CM024074.1 - View