Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0031058 PREDICTED: scarecrow-like transcription factor PAT1 [Vitis vinifera] Chr5 - View
CSS0033997 unnamed protein product [Coffea canephora] Chr8 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Actinidia chinensis Actinidia39071 Lachesis_group9 - View
Actinidia chinensis Actinidia09777 Lachesis_group5 - View
Arabidopsis lyrata AL8G20810 scaffold_8 - View
Arabidopsis lyrata AL3G42520 scaffold_3 - View
Avicennia marina MSTRG.12235 ScioBoG_17730_HRSCAF_17811 - View
Avicennia marina MSTRG.6982 ScioBoG_102840_HRSCAF_103099 - View
Avicennia marina MSTRG.14927 ScioBoG_19538_HRSCAF_19626 + View
Avicennia marina MSTRG.6647 ScioBoG_102840_HRSCAF_103099 + View
Amaranthus hybridus Ah.04g166430 AmaHy_arrow1_Scaffold_4 - View
Amaranthus hybridus Ah.14g082770 Scarecrow-like transcription factor PAT1 (GRAS family protein 29) (AtGRAS-29) (Protein PHYTOCHROME A SIGNAL TRANSDUCTION 1) AmaHy_arrow1_Scaffold_14 + View
Aquilegia oxysepala Aqoxy4G02212 CHR04 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.MTF7G2 PF03514 - GRAS domain family (GRAS) arahy.Tifrunner.gnm1.Arahy.11 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.59VQSP PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED arahy.Tifrunner.gnm1.Arahy.17 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.H50D8Y PF03514 - GRAS domain family (GRAS) arahy.Tifrunner.gnm1.Arahy.07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.1G2CVV PF03514 - GRAS domain family (GRAS) arahy.Tifrunner.gnm1.Arahy.01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.GZBK6D PTHR31636:SF45 - SCARECROW-LIKE PROTEIN 13 arahy.Tifrunner.gnm1.Arahy.04 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.P9UX8E PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED arahy.Tifrunner.gnm1.Arahy.07 - View
Arabidopsis thaliana AT5G48150 GRAS family transcription factor Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway. phytochrome a signal transduction 1 (PAT1)%3B CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202)%3B BEST Arabidopsis thaliana protein match is: SCARECROW-like 21 (TAIR:AT2G04890.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). phytochrome a signal transduction 1 (PAT1)%3B CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202)%3B BEST Arabidopsis thaliana protein match is: SCARECROW-like 21 (TAIR:AT2G04890.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr5 - View
Arabidopsis thaliana AT2G04890 SCARECROW-like 21 Encodes a scarecrow-like protein (SCL21). Member of GRAS gene family. SCARECROW-like 21 (SCL21)%3B CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202)%3B BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT5G48150.2)%3B Has 2478 Blast hits to 2441 proteins in 302 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2474%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr2 - View
Brassica carinata BcaB04g19550 ChrB04 - View
Brassica carinata BcaB08g35913 ChrB08 - View
Brassica napus C02p56290 C02 - View
Brassica oleracea BolC9t57496H C9 - View
Brassica oleracea BolC2t11686H C2 - View
Beta vulgaris EL10Ac4g07616 PF03514 - GRAS domain family (GRAS) Chr4_EL10_PGA_scaffold1 + View
Beta vulgaris EL10Ac9g22732 PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED Chr9_EL10_PGA_scaffold8 + View
Capsicum annuum CAN.G854.5 PGAv.1.6.scaffold854 - View
Capsicum annuum CAN.G337.29 PGAv.1.6.scaffold337 + View
Cannabis sativa CANSAT56G1833 NC_044371.1 + View
Cicer arietinum L. Ca_00742_v3 Ca_LG1_v3 - View
Cicer arietinum L. Ca_06461_v3 Ca_LG2_v3 + View
Cicer arietinum L. Ca_06372_v3 Ca_LG2_v3 - View
Corylus avellana Haze_12693 Similar to PAT1: Scarecrow-like transcription factor PAT1 (Arabidopsis thaliana OX%3D3702) 5 + View
Corylus avellana Haze_09786 Similar to PAT1: Scarecrow-like transcription factor PAT1 (Arabidopsis thaliana OX%3D3702) 4 - View
Corylus avellana Haze_06969 Similar to SCL13: Scarecrow-like protein 13 (Arabidopsis thaliana OX%3D3702) 2 - View
Coffea canephora Cc09_g00640 Scarecrow-like protein 13 chr9 + View
Citrus clementina Ciclev10014845m.g scaffold_2 - View
Citrus clementina Ciclev10007927m.g scaffold_1 - View
Citrus clementina Ciclev10014811m.g scaffold_2 - View
Carpinus fangiana Cfa000075 Cfa01 + View
Carpinus fangiana Cfa014246 Cfa06 + View
Cardamine hirsuta CARHR184190 GRAS family transcription factor Chr6 + View
Cardamine hirsuta CARHR102910 Scarecrow-like 1 transcription factor Chr3 - View
Carya illinoinensis CiPaw.04G195900 PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED Chr04 - View
Carya illinoinensis CiPaw.10G079500 PTHR31636:SF45 - SCARECROW-LIKE PROTEIN 13 Chr10 - View
Carya illinoinensis CiPaw.03G278500 PTHR31636//PTHR31636:SF38 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 21-RELATED Chr03 - View
Carya illinoinensis CiPaw.09G104700 PTHR31636//PTHR31636:SF45 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 13 Chr09 - View
Carya illinoinensis CiPaw.11G200900 PTHR31636//PTHR31636:SF38 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 21-RELATED Chr11 - View
Citrullus lanatus ClCG02G009400 Scarecrow-like 1 transcription factor CG_Chr02 + View
Citrullus lanatus ClCG10G004610 Scarecrow-like 1 transcription factor CG_Chr10 + View
Cucumis melo MELO3C025987.2 Scarecrow-like transcription factor PAT1 chr11 - View
Cucumis melo MELO3C014133.2 Scarecrow-like transcription factor PAT1 chr06 + View
Corchorus olitorius COL.COLO4_09784 Transcription factor GRAS AWUE01014269.1 - View
Carica papaya Cpa.g.sc12.194 supercontig_12 + View
Chenopodium quinoa AUR62015062 PAT1: Scarecrow-like transcription factor PAT1 C_Quinoa_Scaffold_2888 + View
Chenopodium quinoa AUR62017519 PAT1: Scarecrow-like transcription factor PAT1 C_Quinoa_Scaffold_3458 + View
Chenopodium quinoa AUR62040660 PAT1: Scarecrow-like transcription factor PAT1 C_Quinoa_Scaffold_3686 + View
Capsella rubella Carub.0003s2649 PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED scaffold_3 - View
Capsella rubella Carub.0008s0773 scaffold_8 - View
Cucumis sativus L. CsaV3_3G004400 scarecrow-like transcription factor PAT1 chr3 + View
Cucumis sativus L. CsaV3_6G009410 Scarecrow-like transcription factor chr6 - View
Daucus carota DCAR_021107 hypothetical protein DCARv2_Chr6 - View
Daucus carota DCAR_013212 hypothetical protein DCARv2_Chr4 + View
Davidia involucrata Dinv05836 GWHABJS00000001 - View
Davidia involucrata Dinv07860 GWHABJS00000013 + View
Davidia involucrata Dinv10311 GWHABJS00000001 - View
Davidia involucrata Dinv40834 GWHABJS00000013 + View
Durio zibethinus Duzib211G0068 NW_019168049.1 + View
Durio zibethinus Duzib138G1821 NW_019167893.1 + View
Durio zibethinus Duzib133G1024 NW_019167938.1 + View
Durio zibethinus Duzib160G0068 NW_019168015.1 - View
Durio zibethinus Duzib192G0486 NW_019168037.1 + View
Durio zibethinus Duzib235G1027 NW_019167982.1 - View
Durio zibethinus Duzib213G0962 NW_019167993.1 + View
Erigeron canadensis ECA234G2037 Conyza_canadensis_scaffold:4 + View
Erigeron canadensis ECA236G0728 Conyza_canadensis_scaffold:3 - View
Eucalyptus grandis Eucgr.E03895 Chr05 + View
Eucalyptus grandis Eucgr.A01051 Chr01 + View
Erythranthe guttata Migut.H01617 scaffold_8 - View
Erythranthe guttata Migut.M00028 scaffold_13 - View
Erythranthe guttata Migut.M01421 scaffold_13 - View
Eutrema salsugineum Thhalv10004053m.g PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED scaffold_6 + View
Eutrema salsugineum Thhalv10002541m.g PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED scaffold_4 + View
Fragaria x ananassa FAN21G0194 PTHR31636//PTHR31636:SF38 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 21-RELATED Fvb3-2 - View
Fragaria x ananassa FAN16G2967 PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED Fvb3-3 - View
Fragaria x ananassa FAN21G4011 PTHR31636//PTHR31636:SF45 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 13 Fvb3-2 - View
Fragaria x ananassa FAN09G3385 PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED Fvb6-2 - View
Fragaria x ananassa FAN14G3416 PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED Fvb6-1 - View
Fragaria x ananassa FAN02G0953 PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED Fvb6-4 + View
Fragaria vesca FvH4_3g00670 PTHR31636:SF45 - SCARECROW-LIKE PROTEIN 13 Fvb3 + View
Fragaria vesca FvH4_3g24030 PTHR31636//PTHR31636:SF38//PTHR31636:SF57 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 21-RELATED // SUBFAMILY NOT NAMED Fvb3 - View
Fragaria vesca FvH4_6g41200 PTHR31636//PTHR31636:SF38 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 21-RELATED Fvb6 + View
Gossypium hirsutum Gohir.A07G167200 PTHR31636//PTHR31636:SF38 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 21-RELATED A07 - View
Gossypium hirsutum Gohir.D01G073300 PTHR31636//PTHR31636:SF38 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 21-RELATED D01 - View
Gossypium hirsutum Gohir.A11G150000 PTHR31636//PTHR31636:SF38 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 21-RELATED A11 + View
Gossypium hirsutum Gohir.D11G156500 PTHR31636//PTHR31636:SF38 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 21-RELATED D11 + View
Gossypium hirsutum Gohir.A01G087100 PTHR31636//PTHR31636:SF38 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 21-RELATED A01 - View
Gossypium hirsutum Gohir.D07G172600 PTHR31636//PTHR31636:SF38 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 21-RELATED D07 + View
Glycine max Glyma.09G011800 PTHR31636:SF45 - SCARECROW-LIKE PROTEIN 13 Gm09 - View
Glycine max Glyma.14G016000 PF03514 - GRAS domain family (GRAS) Gm14 + View
Glycine max Glyma.07G266500 PTHR31636:SF45 - SCARECROW-LIKE PROTEIN 13 Gm07 - View
Glycine max Glyma.02G297700 PF03514 - GRAS domain family (GRAS) Gm02 - View
Glycine max Glyma.08G325900 PF03514 - GRAS domain family (GRAS) Gm08 - View
Glycine max Glyma.14G006900 PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED Gm14 - View
Glycine max Glyma.17G007600 PTHR31636:SF45 - SCARECROW-LIKE PROTEIN 13 Gm17 + View
Glycine max Glyma.02G306200 PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED Gm02 + View
Glycine max Glyma.18G081100 PF03514 - GRAS domain family (GRAS) Gm18 + View
Gossypium raimondii Gorai.007G167000 Chr07 + View
Gossypium raimondii Gorai.001G192800 Chr01 + View
Gossypium raimondii Gorai.002G096300 Chr02 - View
Hydrangea macrophylla Hma1.2p1_0133F.1_g061290 Hma1.2p1_0133F.1 - View
Hydrangea macrophylla Hma1.2p1_0036F.1_g022740 Hma1.2p1_0036F.1 + View
Lupinus albus Lalb_Chr04g0247981 PF03514 - GRAS domain family (GRAS) Lalb_Chr04 + View
Lupinus albus Lalb_Chr04g0247251 PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED Lalb_Chr04 - View
Lotus japonicus Lj6g0023382 PF03514 - GRAS domain family (GRAS) chr6 + View
Lotus japonicus LjContig00081g0007905 PTHR31636//PTHR31636:SF38 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 21-RELATED Contig00081 + View
Lotus japonicus LjContig00272g0003758 PF03514 - GRAS domain family (GRAS) Contig00272 - View
Lonicera japonica Lj1P884T65 GWHAAZE00000001 - View
Lonicera japonica Lj1P1242T76 GWHAAZE00000001 - View
Lonicera japonica Lj1P791T67 GWHAAZE00000001 - View
Lactuca sativa Lsat_1_v5_gn_5_122860 PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED Lsat_1_v8_lg_5 + View
Lactuca sativa Lsat_1_v5_gn_7_96181 PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED Lsat_1_v8_lg_7 - View
Magnolia biondii MBI16_g11561_MAGBIO AED:0.13 Chr16 - View
Magnolia biondii MBI19_g40237_MAGBIO AED:0.10 Chr19 + View
Malus domestica MD09G1121700 GRAS family transcription factor Chr09 - View
Malus domestica MD17G1112700 GRAS family transcription factor Chr17 - View
Malus domestica MD11G1204900 GRAS family transcription factor Chr11 + View
Malus domestica MD03G1188800 scarecrow-like 5 Chr03 + View
Manihot esculenta Manes.13G063600 Chromosome13 + View
Manihot esculenta Manes.03G137851 Chromosome03 - View
Manihot esculenta Manes.12G061900 Chromosome12 - View
Manihot esculenta Manes.15G063500 Chromosome15 + View
Medicago truncatula Medtr3g056110 GRAS family transcription factor chr3 - View
Medicago truncatula Medtr5g097480 GRAS family transcription factor chr5 + View
Nelumbo nucifera Nn1g03250 chr1 + View
Nelumbo nucifera Nn1g07437 chr1 - View
Nicotiana tabacum Nitab4.5_0000441g0140 Transcription factor GRAS Nitab4.5_0000441 + View
Nicotiana tabacum Nitab4.5_0000461g0080 Transcription factor GRAS Nitab4.5_0000461 - View
Olea europaea Oeu029954.1 chr16 - View
Oryza sativa ssp. japonica Os07g0583600 Similar to Chitin-inducible gibberellin-responsive protein 2. Chitin-inducible gibberellin-responsive protein. chr07 + View
Petunia axillaris Peaxi162Scf00776g00311 GRAS family transcription factor Peaxi162Scf00776 + View
Punica granatum PGR031G2478 NC_045127.1 + View
Punica granatum PGR042G2430 NC_045130.1 - View
Prunus persica Prupe.3G201900 Pp03 + View
Prunus persica Prupe.4G233000 Pp04 - View
Prunus persica Prupe.4G007500 PTHR31636:SF45 - SCARECROW-LIKE PROTEIN 13 Pp04 + View
Papaver somniferum PSO675G0038 NC_039358.1 + View
Papaver somniferum PSO541G4590 NC_039363.1 - View
Populus trichocarpa Potri.001G361700 PF03514 - GRAS domain family (GRAS) Chr01 - View
Populus trichocarpa Potri.014G164400 PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED Chr14 - View
Phaseolus vulgaris Phvul.006G053400 PF03514 - GRAS domain family (GRAS) Chr06 - View
Phaseolus vulgaris Phvul.008G286000 PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED Chr08 + View
Phaseolus vulgaris Phvul.006G141700 PTHR31636:SF45 - SCARECROW-LIKE PROTEIN 13 Chr06 + View
Phaseolus vulgaris Phvul.008G275500 PF03514 - GRAS domain family (GRAS) Chr08 - View
Quercus lobata QL05p068646 5 + View
Quercus lobata QL08p028742 8 + View
Rosa chinensis RcHm_v2.0_Chr2g0156761 RcHm_v2.0_Chr2 + View
Rosa chinensis RcHm_v2.0_Chr5g0042621 RcHm_v2.0_Chr5 - View
Rosa chinensis RcHm_v2.0_Chr5g0000891 RcHm_v2.0_Chr5 + View
Rhododendron simsii Rhsim06G0174200 chr06 - View
Rhododendron simsii Rhsim04G0039000 chr04 + View
Rhododendron simsii Rhsim04G0014800 chr04 + View
Striga asiatica SGA_v2.0_scaffold181G39676 scaffold181 - View
Salvia bowleyana SalBow7G4652 GWHASIU00000005 + View
Salvia bowleyana SalBow8G5016 GWHASIU00000004 + View
Salvia bowleyana SalBow7G1107 GWHASIU00000005 - View
Salix brachista Sabra16G0238500 GWHAAZH00000016 - View
Salix brachista Sabra14G0125200 GWHAAZH00000014 - View
Simmondsia chinensis Sc21g0000830 GWHAASQ00000021 + View
Simmondsia chinensis Sc06g0009820 GWHAASQ00000006 + View
Sechium edule Sed0007021 LG08 + View
Sechium edule Sed0012924 LG01 - View
Solanum lycopersicum Solyc07g047950.1 Transcription factor GRAS (AHRD V3.3 *** A0A200QZY2_9MAGN) SL4.0ch07 + View
Solanum lycopersicum Solyc07g065270.1 GRAS7 SL4.0ch07 - View
Schrenkiella parvula Sp2g18550 PTHR31636//PTHR31636:SF38 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 21-RELATED ch2-4 - View
Schrenkiella parvula Sp3g23490 PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED ch3-2 - View
Solanum pennellii Sopen07g024380 Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway. | phytochrome a signal transduction 1 (PAT1) | CONTAINS InterPro DOMAIN/s: Transcription factor GRAS | BEST Arabidopsis thaliana protein match is: SCARECROW-like 21 Spenn-ch07 + View
Solanum pennellii Sopen07g033480 Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway. | phytochrome a signal transduction 1 (PAT1) | CONTAINS InterPro DOMAIN/s: Transcription factor GRAS | BEST Arabidopsis thaliana protein match is: SCARECROW-like 21 Spenn-ch07 - View
Solanum tuberosum PGSC0003DMG400022187 GRAS7 ST4.03ch07 - View
Solanum tuberosum PGSC0003DMG400006132 GRAS family transcription factor ST4.03ch07 + View
Trochodendron aralioides TAR627G0475 group6 - View
Trochodendron aralioides TAR629G3375 group0 + View
Theobroma cacao Thecc.07G022500 Scarecrow-like transcription factor PAT1 Chromosome_7 + View
Theobroma cacao Thecc.01G190100 GRAS family transcription factor Chromosome_1 - View
Tarenaya hassleriana THA.LOC104819044 scarecrow-like transcription factor PAT1 isoform X1 NW_010966177.1 + View
Trifolium pratense TPR.G15069 Tp57577_TGAC_v2_scaf_576 + View
Trifolium pratense TPR.G1919 Tp57577_TGAC_v2_LG1 - View
Tripterygium wilfordii TWI36G0311 NC_052237.1 - View
Tripterygium wilfordii TWI39G1303 NC_052250.1 + View
Tripterygium wilfordii TWI75G1752 NC_052253.1 - View
Tripterygium wilfordii TWI38G0348 NC_052252.1 + View
Vaccinium macrocarpon vmacro15751 Similar to SCL13: Scarecrow-like protein 13 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro12105 Similar to PAT1: Scarecrow-like transcription factor PAT1 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro09395 Similar to PAT1: Scarecrow-like transcription factor PAT1 (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0540G0737 CM024075.1 - View
Vigna mungo VMungo1215G0983 CM024074.1 + View
Vigna mungo VMungo0647G1225 CM024073.1 + View
Vigna mungo VMungo0540G0285 CM024075.1 + View
Vigna mungo VMungo0647G1081 CM024073.1 - View
Vitis vinifera GSVIVG01030047001 chr12 - View
Vitis vinifera GSVIVG01037777001 chr19 - View