Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0044779 PREDICTED: RING-H2 finger protein ATL80 [Vitis vinifera] Chr1 - View
CSS0023369 PREDICTED: RING-H2 finger protein ATL8 [Vitis vinifera] Chr4 + View
CSS0035204 PREDICTED: RING-H2 finger protein ATL66-like [Nicotiana sylvestris] Chr4 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G6490 LG-4 + View
Aethionema arabicum Aa31LG7G4980 LG-7 + View
Acer truncatum Atru.chr13.80 chr13 - View
Actinidia chinensis Actinidia28615 Lachesis_group27 - View
Actinidia chinensis Actinidia32991 Lachesis_group11 + View
Actinidia chinensis Actinidia37909 Lachesis_group7 - View
Arabidopsis lyrata AL2G36520 scaffold_2 + View
Arabidopsis lyrata AL1G33830 scaffold_1 + View
Avicennia marina MSTRG.22088 ScioBoG_3008_HRSCAF_3015 - View
Avicennia marina MSTRG.24509 ScioBoG_4088_HRSCAF_4107 - View
Amaranthus hybridus Ah.00g001100 RING-H2 finger protein ATL8 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL8) AmaHy_arrow1_Contig177_quiver + View
Aquilegia oxysepala Aqoxy6G01564 CHR06 - View
Aquilegia oxysepala Aqoxy5G00973 CHR05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.U1NS8X PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.20 - View
Arabidopsis thaliana AT1G76410 RING/U-box superfamily protein ATL8%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G20823.1)%3B Has 9001 Blast hits to 8977 proteins in 267 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2299%3B Fungi - 634%3B Plants - 4930%3B Viruses - 29%3B Other Eukaryotes - 1109 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G20823 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: response to chitin%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G76410.1)%3B Has 9063 Blast hits to 9039 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2341%3B Fungi - 637%3B Plants - 4964%3B Viruses - 26%3B Other Eukaryotes - 1095 (source: NCBI BLink). Chr1 + View
Amborella trichopoda ATR0807G001 AmTr_v1.0_scaffold00044 - View
Brassica carinata BcaB07g32075 ChrB07 + View
Brassica carinata BcaC06g34837 ChrC06 + View
Brassica carinata BcaC05g25984 ChrC05 + View
Brassica carinata BcaC08g47139 ChrC08 + View
Brassica carinata BcaC03g15673 ChrC03 + View
Brassica carinata BcaB05g24991 ChrB05 + View
Brassica carinata BcaC08g47253 ChrC08 - View
Brassica carinata BcaB03g12851 ChrB03 - View
Brassica napus C05p19370 C05 + View
Brassica napus A08p29220 A08 - View
Brassica napus C02p33050 C02 - View
Brassica napus A07p15470 A07 - View
Brassica napus A07p42040 A07 + View
Brassica napus A06p16810 A06 + View
Brassica napus C06p50610 C06 + View
Brassica napus C08p20380 C08 + View
Brassica napus C07p22780 C07 - View
Brassica oleracea BolC7t42815H C7 - View
Brassica oleracea BolC5t30640H C5 + View
Brassica oleracea BolC6t40086H C6 + View
Brassica oleracea BolC2t09391H C2 + View
Brassica oleracea BolC8t49667H C8 + View
Brassica rapa BraA08t34857Z A08 - View
Brassica rapa BraA07t29287Z A07 - View
Brassica rapa BraA07t31734Z A07 + View
Brassica rapa BraA06t24790Z A06 + View
Brassica rapa BraA02t07100Z A02 + View
Beta vulgaris EL10Ac1g01893 PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr1_EL10_PGA_scaffold3 - View
Beta vulgaris EL10Ac9g21538 PTHR14155//PTHR14155:SF74 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL45-RELATED Chr9_EL10_PGA_scaffold8 + View
Cicer arietinum L. Ca_15391_v3 Ca_LG5_v3 - View
Cicer arietinum L. Ca_24993_v3 Ca_LG8_v3 + View
Coffea canephora Cc07_g12050 RING-H2 finger protein ATL80 chr7 + View
Citrus clementina Ciclev10004041m.g scaffold_5 + View
Carpinus fangiana Cfa014125 Cfa05 + View
Cardamine hirsuta CARHR069970 Ring finger protein Chr2 + View
Cardamine hirsuta CARHR021250 Ring finger protein Chr1 + View
Carya illinoinensis CiPaw.08G076500 PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr08 + View
Carya illinoinensis CiPaw.07G134800 PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr07 - View
Citrullus lanatus ClCG11G018920 Ring finger protein CG_Chr11 + View
Cucumis melo MELO3C017047.2 RING-H2 finger protein ATL80 chr07 - View
Carica papaya Cpa.g.sc26.150 supercontig_26 - View
Chenopodium quinoa AUR62003729 ATL80: RING-H2 finger protein ATL80 C_Quinoa_Scaffold_2370 + View
Chenopodium quinoa AUR62013178 ATL80: RING-H2 finger protein ATL80 C_Quinoa_Scaffold_1040 + View
Chenopodium quinoa AUR62010177 ATL80: RING-H2 finger protein ATL80 C_Quinoa_Scaffold_1257 + View
Capsella rubella Carub.0001s2028 PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED scaffold_1 + View
Capsella rubella Carub.0002s2332 PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED scaffold_2 + View
Cucumis sativus L. CsaV3_4G037520 RING-H2 finger protein ATL80 chr4 + View
Daucus carota DCAR_016793 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv40207 GWHABJS00000014 - View
Davidia involucrata Dinv28305 GWHABJS00000012 + View
Durio zibethinus Duzib041G0072 NW_019167826.1 - View
Durio zibethinus Duzib093G2091 NW_019167937.1 + View
Durio zibethinus Duzib147G0296 NW_019168470.1 + View
Durio zibethinus Duzib116G0197 NW_019167949.1 - View
Eucalyptus grandis Eucgr.F01804 Chr06 + View
Eucalyptus grandis Eucgr.I02211 Chr09 - View
Eutrema salsugineum Thhalv10019183m.g PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED scaffold_9 - View
Eutrema salsugineum Thhalv10009964m.g PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED scaffold_5 - View
Fragaria x ananassa FAN24G2574 PTHR14155:SF74 - RING-H2 FINGER PROTEIN ATL45-RELATED Fvb2-2 - View
Fragaria x ananassa FAN27G1023 PTHR14155//PTHR14155:SF74 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL45-RELATED Fvb2-1 + View
Fragaria vesca FvH4_2g16840 PTHR14155//PTHR14155:SF74 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL45-RELATED Fvb2 + View
Gossypium hirsutum Gohir.D01G087600 PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED D01 - View
Gossypium hirsutum Gohir.A01G102500 PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED A01 - View
Glycine max Glyma.06G015200 PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm06 - View
Glycine max Glyma.16G112200 PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm16 + View
Gossypium raimondii Gorai.002G113500 Chr02 - View
Lupinus albus Lalb_Chr23g0265601 PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Lalb_Chr23 - View
Lupinus albus Lalb_Chr08g0246511 PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Lalb_Chr08 + View
Lotus japonicus Lj1g0023581 PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED chr1 - View
Magnolia biondii MBI08_g29075_MAGBIO AED:0.03 Chr08 - View
Malus domestica MD06G1005400 RING/U-box superfamily protein Chr06 - View
Malus domestica MD02G1113400 RING/U-box superfamily protein Chr02 - View
Manihot esculenta Manes.18G002800 Chromosome18 - View
Manihot esculenta Manes.05G126000 Chromosome05 - View
Manihot esculenta Manes.01G156900 Chromosome01 + View
Medicago truncatula Medtr3g116000 anaphase-promoting complex subunit 11 RING-H2 finger protein chr3 + View
Nelumbo nucifera Nn5g31023 chr5 + View
Nelumbo nucifera Nn6g31665 chr6 - View
Nicotiana tabacum Nitab4.5_0001756g0170 Zinc finger, RING/FYVE/PHD-type, Zinc finger, RING-type Nitab4.5_0001756 - View
Petunia axillaris Peaxi162Scf00064g00139 RING/U-box superfamily protein Peaxi162Scf00064 + View
Petunia axillaris Peaxi162Scf00680g00410 RING/U-box superfamily protein Peaxi162Scf00680 + View
Punica granatum PGR031G1175 NC_045127.1 + View
Punica granatum PGR083G1652 NC_045133.1 + View
Papaver somniferum PSO541G0890 NC_039363.1 + View
Papaver somniferum PSO675G4511 NC_039358.1 + View
Papaver somniferum PSO170G5591 NC_039360.1 - View
Papaver somniferum PSO210G0303 NC_039359.1 + View
Populus trichocarpa Potri.002G006400 PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr02 - View
Populus trichocarpa Potri.005G255200 PTHR14155//PTHR14155:SF74 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL45-RELATED Chr05 + View
Phaseolus vulgaris Phvul.003G271400 PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr03 + View
Phaseolus vulgaris Phvul.009G007400 KOG1493//KOG2930 - Anaphase-promoting complex (APC), subunit 11 // SCF ubiquitin ligase, Rbx1 component Chr09 + View
Quercus lobata QL02p015355 CM012294 - View
Rosa chinensis RcHm_v2.0_Chr6g0280971 RcHm_v2.0_Chr6 + View
Rhododendron simsii Rhsim10G0192000 chr10 - View
Rhododendron simsii Rhsim07G0257300 chr07 + View
Rhododendron simsii Rhsim06G0004100 chr06 - View
Salix brachista Sabra02G0004500 GWHAAZH00000002 - View
Salix brachista Sabra05G0197700 GWHAAZH00000005 + View
Simmondsia chinensis Sc15g0004090 GWHAASQ00000015 - View
Simmondsia chinensis Sc26g0004720 GWHAASQ00000026 + View
Sechium edule Sed0005605 LG01 - View
Sapria himalayana SHI07959 scaffold7_18583372 - View
Solanum lycopersicum Solyc04g082690.1 RING/U-box superfamily protein (AHRD V3.3 *** A0A2U1LI04_ARTAN) SL4.0ch04 + View
Solanum lycopersicum Solyc12g094690.1 RING/U-box superfamily protein (AHRD V3.3 *** A0A2U1LI04_ARTAN) SL4.0ch12 + View
Schrenkiella parvula Sp5g31570 PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED ch5-7 + View
Schrenkiella parvula Sp1g18520 PTHR14155//PTHR14155:SF187 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED ch1-1 + View
Solanum pennellii Sopen02g027080 ATL8 | FUNCTIONS IN: zinc ion binding | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch02 - View
Solanum pennellii Sopen04g036320 ATL8 | FUNCTIONS IN: zinc ion binding | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch04 + View
Solanum pennellii Sopen12g031590 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | INVOLVED IN: response to chitin | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch12 + View
Solanum tuberosum PGSC0003DMG400009919 Zinc finger family protein ST4.03ch04 + View
Solanum tuberosum PGSC0003DMG400023160 RING-H2 finger protein ATL80 ST4.03ch02 - View
Solanum tuberosum PGSC0003DMG400029401 RING-H2 finger protein ATL80 ST4.03ch12 + View
Trochodendron aralioides TAR381G1050 group11 - View
Trochodendron aralioides TAR628G0785 group5 + View
Trochodendron aralioides TAR376G0879 group14 + View
Theobroma cacao Thecc.08G064100 RING/U-box superfamily protein Chromosome_8 + View
Theobroma cacao Thecc.01G002800 Basic helix-loop-helix-containing protein Chromosome_1 - View
Tarenaya hassleriana THA.LOC104812000 RING-H2 finger protein ATL80-like NW_010965372.1 + View
Trifolium pratense TPR.G38120 Tp57577_TGAC_v2_LG7 + View
Tripterygium wilfordii TWI56G0701 NC_052242.1 + View
Vaccinium macrocarpon vmacro04421 Similar to ATL8: RING-H2 finger protein ATL8 (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1309G2755 CM024072.1 + View
Vigna mungo VMungo0251G1072 CM024069.1 + View
Zea mays Zm00001eb022240 Zm00001e002233 RING-H2 finger protein ATL80 1 - View