Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG10G1900 LG-10 + View
Acer truncatum Atru.chr2.2219 chr2 + View
Actinidia chinensis Actinidia12557 Lachesis_group19 - View
Arabidopsis lyrata AL1G61660 scaffold_1 - View
Arabidopsis lyrata AL3G27340 scaffold_3 + View
Avicennia marina MSTRG.14221 ScioBoG_18782_HRSCAF_18867 - View
Amaranthus hybridus Ah.06g185080 AmaHy_arrow1_Scaffold_6 - View
Arabidopsis thaliana AT3G15010 RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: leaf senescence%2C cell death%2C ethylene biosynthetic process%2C defense response%3B LOCATED IN: nucleolus%2C nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G41060.2)%3B Has 59064 Blast hits to 28085 proteins in 1373 species: Archae - 21%3B Bacteria - 15117%3B Metazoa - 26005%3B Fungi - 3900%3B Plants - 7947%3B Viruses - 346%3B Other Eukaryotes - 5728 (source: NCBI BLink). RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: leaf senescence%2C cell death%2C ethylene biosynthetic process%2C defense response%3B LOCATED IN: nucleolus%2C nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G41060.2)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaC08g44068 ChrC08 - View
Brassica carinata BcaB04g17098 ChrB04 + View
Brassica carinata BcaC08g43514 ChrC08 - View
Brassica carinata BcaB02g10944 ChrB02 - View
Brassica carinata BcaB07g33343 ChrB07 + View
Brassica napus C06p14640 C06 - View
Brassica napus C03p91290 C03 - View
Brassica napus A06p01100 A06 + View
Brassica napus A05p18460 A05 + View
Brassica napus C06p09020 C06 - View
Brassica oleracea BolC6t35980H C6 - View
Brassica oleracea BolC6t36646H C6 - View
Brassica rapa BraA06t23337Z A06 + View
Brassica rapa BraA05t20738Z A05 + View
Capsicum annuum CAN.G162.19 PGAv.1.6.scaffold162 + View
Cannabis sativa CANSAT35G0425 NC_044378.1 + View
Citrus clementina Ciclev10008394m.g scaffold_1 + View
Carpinus fangiana Cfa019589 Cfa08 + View
Cardamine hirsuta CARHR043480 RNA binding protein Chr1 - View
Carya illinoinensis CiPaw.12G114600 PTHR24012//PTHR24012:SF490 - FAMILY NOT NAMED // UBP1-ASSOCIATED PROTEIN 2C Chr12 + View
Carya illinoinensis CiPaw.11G162600 PTHR24012//PTHR24012:SF490 - FAMILY NOT NAMED // UBP1-ASSOCIATED PROTEIN 2C Chr11 + View
Cucumis melo MELO3C016101.2 UBP1-associated protein 2C chr07 - View
Corchorus olitorius COL.COLO4_17604 hypothetical protein AWUE01016365.1 + View
Carica papaya Cpa.g.sc131.61 supercontig_131 + View
Chenopodium quinoa AUR62019527 UBA2B: UBP1-associated protein 2B C_Quinoa_Scaffold_2127 - View
Capsella rubella Carub.0001s4243 KOG0130//KOG0131 - RNA-binding protein RBM8/Tsunagi (RRM superfamily) // Splicing factor 3b, subunit 4 scaffold_1 - View
Daucus carota DCAR_021016 hypothetical protein DCARv2_Chr6 + View
Daucus carota DCAR_028010 hypothetical protein DCARv2_Chr8 - View
Davidia involucrata Dinv14971 GWHABJS00000001 + View
Davidia involucrata Dinv18348 GWHABJS00000013 - View
Durio zibethinus Duzib170G0780 NW_019167871.1 - View
Durio zibethinus Duzib213G0296 NW_019167993.1 - View
Eucalyptus grandis Eucgr.F03253 Chr06 - View
Eucalyptus grandis Eucgr.F01217 Chr06 - View
Erythranthe guttata Migut.H01979 scaffold_8 - View
Eutrema salsugineum Thhalv10011518m.g KOG0130//KOG0131 - RNA-binding protein RBM8/Tsunagi (RRM superfamily) // Splicing factor 3b, subunit 4 scaffold_7 + View
Fragaria x ananassa FAN16G1008 PTHR24012//PTHR24012:SF490 - FAMILY NOT NAMED // UBP1-ASSOCIATED PROTEIN 2C Fvb3-3 + View
Fragaria x ananassa FAN21G3848 PTHR24012//PTHR24012:SF490 - FAMILY NOT NAMED // UBP1-ASSOCIATED PROTEIN 2C Fvb3-2 - View
Fragaria x ananassa FAN25G2485 PTHR24012//PTHR24012:SF490 - FAMILY NOT NAMED // UBP1-ASSOCIATED PROTEIN 2C Fvb3-1 - View
Fragaria vesca FvH4_3g18630 PTHR24012//PTHR24012:SF490 - FAMILY NOT NAMED // UBP1-ASSOCIATED PROTEIN 2C Fvb3 + View
Gossypium hirsutum Gohir.A01G057800 PTHR24012:SF490 - UBP1-ASSOCIATED PROTEIN 2C A01 - View
Gossypium hirsutum Gohir.D05G343950 D05 + View
Gossypium hirsutum Gohir.A04G038900 PTHR24012:SF490 - UBP1-ASSOCIATED PROTEIN 2C A04 - View
Glycine max Glyma.06G231000 KOG0130//KOG0131 - RNA-binding protein RBM8/Tsunagi (RRM superfamily) // Splicing factor 3b, subunit 4 Gm06 + View
Glycine max Glyma.12G159600 PTHR24012:SF490 - UBP1-ASSOCIATED PROTEIN 2C Gm12 - View
Gossypium raimondii Gorai.002G063400 Chr02 - View
Gossypium raimondii Gorai.009G371500 Chr09 + View
Hydrangea macrophylla Hma1.2p1_0416F.1_g148700 Hma1.2p1_0416F.1 - View
Lupinus albus Lalb_Chr03g0031081 KOG0149//KOG4205 - Predicted RNA-binding protein SEB4 (RRM superfamily) // RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 Lalb_Chr03 - View
Lupinus albus Lalb_Chr19g0133881 K12741 - heterogeneous nuclear ribonucleoprotein A1/A3 (HNRNPA1_3) Lalb_Chr19 + View
Lotus japonicus Lj3g0007758 KOG0130//KOG0131 - RNA-binding protein RBM8/Tsunagi (RRM superfamily) // Splicing factor 3b, subunit 4 chr3 - View
Lonicera japonica Lj8P151T14 GWHAAZE00000008 + View
Lonicera japonica Lj2C297T16 GWHAAZE00000002 - View
Lonicera japonica Lj1A833G53 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_7_23020 PTHR24012:SF490 - UBP1-ASSOCIATED PROTEIN 2C Lsat_1_v8_lg_7 - View
Magnolia biondii MBI07_g21393_MAGBIO AED:0.10 Chr07 - View
Magnolia biondii MBI06_g25990_MAGBIO AED:0.21 Chr06 - View
Malus domestica MD11G1259900 RNA-binding (RRM/RBD/RNP motifs) family protein Chr11 - View
Malus domestica MD03G1240500 RNA-binding (RRM/RBD/RNP motifs) family protein Chr03 - View
Manihot esculenta Manes.17G054700 Chromosome17 - View
Medicago truncatula Medtr8g463890 RNA-binding (RRM/RBD/RNP motif) family protein chr8 - View
Nicotiana tabacum Nitab4.5_0000035g0070 RNA recognition motif domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0000035 - View
Nicotiana tabacum Nitab4.5_0000246g0150 RNA recognition motif domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0000246 - View
Olea europaea Oeu051115.1 chr6 + View
Olea europaea Oeu061345.1 chr21 - View
Petunia axillaris Peaxi162Scf00069g02110 UBP1-associated protein 2A Peaxi162Scf00069 - View
Punica granatum PGR083G0635 NC_045133.1 - View
Prunus persica Prupe.4G170100 PTHR24012:SF490 - UBP1-ASSOCIATED PROTEIN 2C Pp04 + View
Papaver somniferum PSO541G4253 NC_039363.1 + View
Phaseolus vulgaris Phvul.011G159400 PTHR24012:SF490 - UBP1-ASSOCIATED PROTEIN 2C Chr11 - View
Quercus lobata QL08p026860 8 + View
Rosa chinensis RcHm_v2.0_Chr5g0031451 RcHm_v2.0_Chr5 + View
Rhododendron simsii Rhsim06G0205600 chr06 - View
Striga asiatica SGA_v2.0_scaffold130G34314 scaffold130 + View
Salix brachista Sabra11G0046900 GWHAAZH00000011 - View
Simmondsia chinensis Sc16g0007470 GWHAASQ00000016 - View
Sechium edule Sed0021023 LG13 - View
Sechium edule Sed0024539 LG04 + View
Solanum lycopersicum Solyc12g014210.3 RNA-binding (RRM/RBD/RNP motif) family protein (AHRD V3.3 *** A0A2K3L2Z0_TRIPR) SL4.0ch12 - View
Schrenkiella parvula Sp1g39820 KOG0130//KOG0131 - RNA-binding protein RBM8/Tsunagi (RRM superfamily) // Splicing factor 3b, subunit 4 ch1-2 - View
Schrenkiella parvula Sp3g13210 PTHR24012:SF490 - UBP1-ASSOCIATED PROTEIN 2C ch3-1 + View
Solanum pennellii Sopen12g006000 RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: leaf senescence, cell death, ethylene biosynthetic process, defense response | LOCATED IN: nucleolus, nucleus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein Spenn-ch12 - View
Solanum tuberosum PGSC0003DMG400015382 Heterogeneous nuclear ribonucleoprotein A2/B1 ST4.03ch12 + View
Solanum tuberosum PGSC0003DMG400012393 Heterogeneous nuclear ribonucleoprotein A1 ST4.03ch07 + View
Trochodendron aralioides TAR627G0936 group6 - View
Trochodendron aralioides TAR624G0884 group9 + View
Trochodendron aralioides TAR626G0860 group3 - View
Theobroma cacao Thecc.07G105400 RNA-binding family protein Chromosome_7 - View
Tripterygium wilfordii TWI38G0971 NC_052252.1 - View
Tripterygium wilfordii TWI38G1407 NC_052252.1 - View
Tripterygium wilfordii TWI39G0195 NC_052250.1 + View
Utricularia gibba unitig_0.g2273 unitig_0 - View
Vaccinium macrocarpon vmacro11914 Similar to UBA2C: UBP1-associated protein 2C (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1127G0421 CM024076.1 - View