Gene: Sopen12g006000

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g006000
  • Transcript Identifier Sopen12g006000.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 4579483-4580805 : negative

Gene Family Information

  • ID HOM05D000845
  • #Genes/#Species 706/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g006000.1

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: leaf senescence, cell death, ethylene biosynthetic process, defense response | LOCATED IN: nucleolus, nucleus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008219
ISO
PLAZA Integrative Orthologycell death AT3G15010
GO:0009693
ISO
PLAZA Integrative Orthologyethylene biosynthetic process AT3G15010
GO:0010150
ISO
PLAZA Integrative Orthologyleaf senescence AT3G15010
GO:0006952
ISO
PLAZA Integrative Orthologydefense response AT3G15010

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G15010

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G15010
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G15010

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
35.1 not assigned.annotated