Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0036491 PREDICTED: DNA-directed RNA polymerase II subunit 1 [Vitis vinifera] Chr9 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G12760 LG-6 - View
Acer truncatum Atru.chr3.905 chr3 + View
Actinidia chinensis Actinidia37951 Lachesis_group7 + View
Actinidia chinensis Actinidia17407 Lachesis_group11 + View
Actinidia chinensis Actinidia29768 Lachesis_group27 + View
Actinidia chinensis Actinidia22939 Lachesis_group26 - View
Arabidopsis lyrata AL7G15240 scaffold_7 + View
Aquilegia oxysepala Aqoxy5G01098 CHR05 - View
Aquilegia oxysepala Aqoxy6G01998 CHR06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.FVA0CM K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) arahy.Tifrunner.gnm1.Arahy.15 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.XNR9AR K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) arahy.Tifrunner.gnm1.Arahy.05 - View
Arabidopsis thaliana AT4G35800 RNA polymerase II large subunit Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II%3B the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit. RNA polymerase II large subunit (NRPB1)%3B FUNCTIONS IN: DNA-directed RNA polymerase activity%2C DNA binding%3B INVOLVED IN: transcription%2C transcription from RNA polymerase II promoter%3B LOCATED IN: nucleus%2C chloroplast%2C DNA-directed RNA polymerase II%2C core complex%2C vacuole%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA polymerase%2C N-terminal (InterPro:IPR006592)%2C RNA polymerase%2C alpha subunit (InterPro:IPR000722)%2C RNA polymerase II%2C heptapeptide repeat%2C eukaryotic (InterPro:IPR000684)%2C RNA polymerase Rpb1%2C domain 7 (InterPro:IPR007073)%2C RNA polymerase Rpb1%2C domain 3 (InterPro:IPR007066)%2C RNA polymerase Rpb1%2C domain 1 (InterPro:IPR007080)%2C RNA polymerase Rpb1%2C domain 4 (InterPro:IPR007083)%2C RNA polymerase Rpb1%2C domain 5 (InterPro:IPR007081)%2C RNA polymerase Rpb1%2C domain 6 (InterPro:IPR007075)%3B BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1)%3B Has 181834 Blast hits to 82224 proteins in 9254 species: Archae - 731%3B Bacteria - 33255%3B Metazoa - 56600%3B Fungi - 34284%3B Plants - 19037%3B Viruses - 3576%3B Other Eukaryotes - 34351 (source: NCBI BLink). Chr4 - View
Brassica carinata BcaC01g00522 ChrC01 - View
Brassica napus A01p02890 A01 + View
Brassica napus C01p03210 C01 + View
Brassica rapa BraA01t00270Z A01 + View
Capsicum annuum CAN.G890.26 PGAv.1.6.scaffold890 - View
Cannabis sativa CANSAT25G1965 NC_044370.1 + View
Cicer arietinum L. Ca_24940_v3 Ca_LG8_v3 + View
Corylus avellana Haze_03702 Similar to NRPB1: DNA-directed RNA polymerase II subunit RPB1 (Arabidopsis thaliana OX%3D3702) 2 - View
Coffea canephora Cc07_g11330 DNA-directed RNA polymerase II subunit RPB1 chr7 + View
Citrus clementina Ciclev10024686m.g scaffold_7 - View
Ceratophyllum demersum CDE05G1991 3 - View
Ceratophyllum demersum CDE04G2464 2 + View
Ceratophyllum demersum CDE02G1347 1 + View
Ceratophyllum demersum CDE05G2406 3 + View
Carpinus fangiana Cfa007031 Cfa02 + View
Cardamine hirsuta CARHR244170 DNA-directed RNA polymerase Chr7 - View
Carya illinoinensis CiPaw.07G063200 PTHR11670//PTHR11670:SF40 - ACONITASE // ACONITATE HYDRATASE 1 Chr07 + View
Citrullus lanatus ClCG10G000460 DNA-directed RNA polymerase CG_Chr10 - View
Citrullus lanatus ClCG01G020600 Aconitate hydratase 1 CG_Chr01 + View
Cucumis melo MELO3C007942.2 aconitate hydratase chr08 + View
Cucumis melo MELO3C013741.2 DNA-directed RNA polymerase subunit chr06 - View
Corchorus olitorius COL.COLO4_22493 Aconitase A/isopropylmalate dehydratase small subunit%2C swivel AWUE01017978.1 + View
Carica papaya Cpa.g.sc6.311 supercontig_6 + View
Chenopodium quinoa AUR62026407 NRPB1: DNA-directed RNA polymerase II subunit 1 C_Quinoa_Scaffold_4244 - View
Capsella rubella Carub.0007s0440 PTHR11670//PTHR11670:SF40 - ACONITASE // ACONITATE HYDRATASE 1 scaffold_7 + View
Cucumis sativus L. CsaV3_6G047510 Aconitate hydratase chr6 + View
Cucumis sativus L. CsaV3_3G000490 DNA-directed RNA polymerase subunit chr3 - View
Daucus carota DCAR_016740 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv40146 GWHABJS00000014 - View
Davidia involucrata Dinv31892 GWHABJS00000002 + View
Davidia involucrata Dinv39555 GWHABJS00000011 + View
Durio zibethinus Duzib147G0386 NW_019168470.1 - View
Durio zibethinus Duzib264G0178 NW_019167960.1 + View
Durio zibethinus Duzib187G1668 NW_019167860.1 + View
Eucalyptus grandis Eucgr.I02304 Chr09 - View
Eucalyptus grandis Eucgr.J02488 Chr10 + View
Eutrema salsugineum Thhalv10024358m.g PTHR11670:SF40 - ACONITATE HYDRATASE 1 scaffold_1 + View
Fragaria x ananassa FAN23G1904 K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) Fvb1-3 - View
Fragaria x ananassa FAN26G3056 K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) Fvb1-2 - View
Fragaria x ananassa FAN19G0156 K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) Fvb1-4 - View
Fragaria x ananassa FAN28G2153 K01681 - aconitate hydratase (ACO, acnA) Fvb1-1 + View
Fragaria vesca FvH4_1g11070 K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) Fvb1 - View
Gossypium hirsutum Gohir.D11G178600 K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) D11 - View
Gossypium hirsutum Gohir.D03G005300 K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) D03 - View
Gossypium hirsutum Gohir.A02G174200 PTHR11670//PTHR11670:SF40 - ACONITASE // ACONITATE HYDRATASE 1 A02 + View
Gossypium hirsutum Gohir.A11G171700 K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) A11 - View
Glycine max Glyma.01G162200 K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) Gm01 - View
Gossypium raimondii Gorai.003G005700 Chr03 - View
Gossypium raimondii Gorai.007G190500 Chr07 - View
Lupinus albus Lalb_Chr09g0321431 K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) Lalb_Chr09 - View
Lupinus albus Lalb_Chr16g0377361 PF04990//PF04998//PF05001 - RNA polymerase Rpb1, domain 7 (RNA_pol_Rpb1_7) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1 C-terminal repeat (RNA_pol_Rpb1_R) Lalb_Chr16 - View
Lonicera japonica Lj4C801G10 GWHAAZE00000004 + View
Lonicera japonica Lj4C226G8 GWHAAZE00000004 + View
Lactuca sativa Lsat_1_v5_gn_2_75441 PTHR11670:SF40 - ACONITATE HYDRATASE 1 Lsat_1_v8_lg_2 - View
Lactuca sativa Lsat_1_v5_gn_2_6980 Lsat_1_v8_lg_2 + View
Malus domestica MD15G1237200 RNA polymerase II large subunit Chr15 - View
Malus domestica MD02G1123200 RNA polymerase II large subunit Chr02 - View
Manihot esculenta Manes.01G151000 Chromosome01 + View
Manihot esculenta Manes.02G110200 Chromosome02 + View
Medicago truncatula Medtr5g022940 cytoplasmic-like aconitate hydratase chr5 + View
Nelumbo nucifera Nn6g31908 chr6 - View
Petunia axillaris Peaxi162Scf00328g00128 DNA-directed RNA polymerase II subunit rpb1 Peaxi162Scf00328 - View
Punica granatum PGR119G0284 NC_045132.1 - View
Prunus persica Prupe.7G174800 Pp07 + View
Pisum sativum Psat2g151760 RNA polymerase Rpb1 + domain 1 chr2LG1 - View
Papaver somniferum PSO675G8715 NC_039358.1 + View
Papaver somniferum PSO541G1835 NC_039363.1 + View
Populus trichocarpa Potri.005G107600 K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) Chr05 - View
Phaseolus vulgaris Phvul.002G104500 K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) Chr02 - View
Quercus lobata QL06p052038 6 + View
Rhododendron simsii Rhsim10G0205500 chr10 - View
Salix brachista Sabra05G0088100 GWHAAZH00000005 - View
Simmondsia chinensis Sc03g0003780 GWHAASQ00000003 + View
Sechium edule Sed0006002 LG04 + View
Sechium edule Sed0010810 LG14 + View
Schrenkiella parvula Sp7g33590 K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) ch7-6 - View
Solanum tuberosum PGSC0003DMG400003590 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) ST4.03ch02 - View
Trochodendron aralioides TAR376G0725 group14 + View
Trochodendron aralioides TAR628G1430 group5 + View
Theobroma cacao Thecc.01G011300 DNA-directed RNA polymerase II subunit RPB1 Chromosome_1 - View
Tarenaya hassleriana THA.LOC104804279 aconitate hydratase 1 NW_010971389.1 + View
Tripterygium wilfordii TWI73G0623 NC_052232.1 + View
Tripterygium wilfordii TWI09G0739 NC_052245.1 - View
Vaccinium macrocarpon vmacro04378 Similar to NRPB1: DNA-directed RNA polymerase II subunit 1 (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1215G0518 CM024074.1 + View
Vitis vinifera GSVIVG01008740001 chr18 - View