Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0017391 PREDICTED: uncharacterized protein LOC100267869 isoform X1 [Vitis vinifera] Chr5 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G1910 LG-4 + View
Actinidia chinensis Actinidia07347 Lachesis_group10 - View
Arabidopsis lyrata AL2G39550 scaffold_2 - View
Arabidopsis lyrata AL1G28780 scaffold_1 + View
Avicennia marina MSTRG.14538 ScioBoG_18782_HRSCAF_18867 - View
Avicennia marina MSTRG.13061 ScioBoG_17730_HRSCAF_17811 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.6BML15 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) arahy.Tifrunner.gnm1.Arahy.07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.90KKP0 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) arahy.Tifrunner.gnm1.Arahy.18 + View
Arabidopsis thaliana AT1G79090 topoisomerase II-associated protein Encodes a component of the mRNA decapping machinery that is found in complexes with and is phosphorylated by MPK4. The protein can be found in P-bodies after treatment with PAMPs. Pat1 mutants exhibit dwarfism and de-repressed immunity dependent on the immune receptor SUMM2. The pat1 constitutive defense phenotype is suppressed by summ2 such that pat1 summ2 mutants display a wild-type phenotype in response to biotrophic and necrotrophic pathogens. FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167)%3B BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaC08g47473 ChrC08 - View
Brassica carinata BcaB02g07196 ChrB02 - View
Brassica carinata BcaC08g45383 ChrC08 + View
Brassica carinata BcaC05g25525 ChrC05 + View
Brassica napus C06p30150 C06 + View
Brassica napus A07p44230 A07 - View
Brassica napus C05p14900 C05 + View
Brassica napus A06p12610 A06 + View
Brassica napus C06p52960 C06 - View
Brassica oleracea BolC5t30205H C5 + View
Brassica oleracea BolC6t40314H C6 - View
Brassica oleracea BolC6t38177H C6 + View
Brassica rapa BraA06t24422Z A06 + View
Brassica rapa BraA07t31931Z A07 - View
Cannabis sativa CANSAT80G0895 NC_044372.1 + View
Cicer arietinum L. Ca_03679_v3 Ca_LG1_v3 + View
Coffea canephora Cc05_g16020 FUNCTIONS IN chr5 - View
Cardamine hirsuta CARHR017090 Protein PAT1-like 1 Chr1 + View
Carya illinoinensis CiPaw.12G006400 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) Chr12 + View
Citrullus lanatus ClCG11G016390 Topoisomerase II-associated protein PAT1 CG_Chr11 - View
Cucumis melo MELO3C010566.2 Topoisomerase II-associated protein PAT1 chr07 + View
Carica papaya Cpa.g.sc10.40 supercontig_10 - View
Cucumis sativus L. CsaV3_4G031830 protein PAT1 homolog 1 chr4 - View
Daucus carota DCAR_009637 hypothetical protein DCARv2_Chr3 + View
Daucus carota DCAR_019931 hypothetical protein DCARv2_Chr6 + View
Davidia involucrata Dinv42514 GWHABJS00000013 + View
Davidia involucrata Dinv19622 GWHABJS00000001 - View
Durio zibethinus Duzib268G1150 NW_019168270.1 + View
Durio zibethinus Duzib213G0170 The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon NW_019167993.1 + View
Erigeron canadensis ECA236G3663 Conyza_canadensis_scaffold:3 - View
Eucalyptus grandis Eucgr.F03181 Chr06 + View
Erythranthe guttata Migut.H01696 scaffold_8 + View
Eutrema salsugineum Thhalv10006845m.g K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) scaffold_5 - View
Fragaria x ananassa FAN25G2785 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) Fvb3-1 - View
Fragaria x ananassa FAN21G2938 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) Fvb3-2 + View
Fragaria x ananassa FAN11G3376 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) Fvb3-4 - View
Fragaria x ananassa FAN16G1614 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) Fvb3-3 + View
Fragaria vesca FvH4_3g15840 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) Fvb3 + View
Gossypium hirsutum Gohir.A01G038600 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) A01 - View
Gossypium hirsutum Gohir.D13G157400 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) D13 + View
Gossypium hirsutum Gohir.A13G153033 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) A13 + View
Gossypium hirsutum Gohir.D01G026200 PTHR21551//PTHR21551:SF4 - TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1 // SUBFAMILY NOT NAMED D01 - View
Glycine max Glyma.08G171700 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) Gm08 - View
Glycine max Glyma.15G255100 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) Gm15 - View
Gossypium raimondii Gorai.013G178200 Chr13 + View
Gossypium raimondii Gorai.002G035500 Chr02 - View
Helianthus annuus HanXRQChr11g0335281 Probable FUNCTIONS IN: molecular_function unknown HanXRQChr11 - View
Hydrangea macrophylla Hma1.2p1_0637F.1_g193570 Hma1.2p1_0637F.1 + View
Lupinus albus Lalb_Chr03g0031811 PTHR21551//PTHR21551:SF4 - TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1 // SUBFAMILY NOT NAMED Lalb_Chr03 + View
Lupinus albus Lalb_Chr25g0284991 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) Lalb_Chr25 + View
Lotus japonicus Lj3g0024248 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) chr3 - View
Lotus japonicus Lj3g0020281 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) chr3 + View
Lonicera japonica Lj1C905G11 GWHAAZE00000001 - View
Lactuca sativa Lsat_1_v5_gn_7_112280 KOG3227 - Calcium-responsive transcription coactivator Lsat_1_v8_lg_7 + View
Malus domestica MD05G1219500 Protein of unknown function Chr05 - View
Malus domestica MD10G1201900 Protein of unknown function Chr10 - View
Manihot esculenta Manes.06G171300 Chromosome06 - View
Manihot esculenta Manes.14G015900 Chromosome14 + View
Medicago truncatula Medtr2g069530 topoisomerase II-associated protein PAT1 chr2 + View
Olea europaea Oeu052010.1 chr13 + View
Olea europaea Oeu051660.1 chr21 + View
Punica granatum PGR031G3154 NC_045127.1 - View
Prunus persica Prupe.4G140400 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) Pp04 + View
Populus trichocarpa Potri.001G457800 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) Chr01 - View
Populus trichocarpa Potri.011G143900 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) Chr11 + View
Phaseolus vulgaris Phvul.005G056500 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) Chr05 - View
Phaseolus vulgaris Phvul.011G174900 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) Chr11 + View
Quercus lobata QL04p073937 4 + View
Rosa chinensis RcHm_v2.0_Chr5g0026641 RcHm_v2.0_Chr5 + View
Rhododendron simsii Rhsim06G0238500 chr06 - View
Striga asiatica SGA_v2.0_scaffold49G18170 scaffold49 - View
Salvia bowleyana SalBow8G3399 GWHASIU00000004 + View
Salix brachista Sabra16G0310300 GWHAAZH00000016 - View
Sechium edule Sed0014036 LG06 - View
Schrenkiella parvula Sp5g34140 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) ch5-7 - View
Schrenkiella parvula Sp1g14760 K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1) ch1-1 + View
Selenicereus undatus Hund12465 Scaffold_33679 + View
Theobroma cacao Thecc.07G153500 Topoisomerase II-associated protein PAT1 Chromosome_7 + View
Trifolium pratense TPR.G9738 Tp57577_TGAC_v2_LG7 - View
Vaccinium macrocarpon vmacro09785 Similar to PAT1: Protein PAT1 homolog (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro11659 Similar to PAT1H1: Protein PAT1 homolog 1 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1127G0124 CM024076.1 + View
Vigna mungo VMungo1080G0504 CM024079.1 + View
Vitis vinifera GSVIVG01020437001 chr19 - View