Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G28440 LG-1 + View
Acer truncatum Atru.chr5.914 chr5 - View
Actinidia chinensis Actinidia06387 Lachesis_group24 - View
Actinidia chinensis Actinidia18496 Lachesis_group22 - View
Arabidopsis lyrata AL4G46650 scaffold_4 + View
Arabidopsis lyrata AL5G45000 scaffold_5 + View
Avicennia marina MSTRG.18068 ScioBoG_22153_HRSCAF_22259 + View
Aquilegia oxysepala Aqoxy2G02568 CHR02 + View
Arabidopsis thaliana AT3G62250 ubiquitin 5 ubiquitin 5 (UBQ5)%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process%2C translation%3B LOCATED IN: cytosolic small ribosomal subunit%3B CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956)%2C Ribosomal protein S27a (InterPro:IPR002906)%2C Ubiquitin conserved site (InterPro:IPR019954)%2C Ubiquitin (InterPro:IPR000626)%2C Ubiquitin supergroup (InterPro:IPR019955)%3B BEST Arabidopsis thaliana protein match is: ubiquitin 6 (TAIR:AT2G47110.2)%3B Has 12703 Blast hits to 7391 proteins in 781 species: Archae - 108%3B Bacteria - 19%3B Metazoa - 5541%3B Fungi - 1408%3B Plants - 3106%3B Viruses - 188%3B Other Eukaryotes - 2333 (source: NCBI BLink). Chr3 + View
Arabidopsis thaliana AT2G47110 ubiquitin 6 polyubiquitin gene ubiquitin 6 (UBQ6)%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: cytosolic small ribosomal subunit%2C intracellular%3B EXPRESSED IN: whole plant%2C male gametophyte%2C guard cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956)%2C Ribosomal protein S27a (InterPro:IPR002906)%2C Ubiquitin conserved site (InterPro:IPR019954)%2C Ubiquitin (InterPro:IPR000626)%2C Ubiquitin supergroup (InterPro:IPR019955)%3B BEST Arabidopsis thaliana protein match is: ubiquitin 5 (TAIR:AT3G62250.1)%3B Has 12701 Blast hits to 7389 proteins in 781 species: Archae - 108%3B Bacteria - 19%3B Metazoa - 5539%3B Fungi - 1408%3B Plants - 3106%3B Viruses - 188%3B Other Eukaryotes - 2333 (source: NCBI BLink). ubiquitin 6 (UBQ6)%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: cytosolic small ribosomal subunit%2C intracellular%3B EXPRESSED IN: whole plant%2C male gametophyte%2C guard cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956)%2C Ribosomal protein S27a (InterPro:IPR002906)%2C Ubiquitin conserved site (InterPro:IPR019954)%2C Ubiquitin (InterPro:IPR000626)%2C Ubiquitin supergroup (InterPro:IPR019955)%3B BEST Arabidopsis thaliana protein match is: ubiquitin 5 (TAIR:AT3G62250.1). Chr2 + View
Brassica carinata BcaB01g03183 ChrB01 - View
Capsicum annuum CAN.G100.26 PGAv.1.6.scaffold100 - View
Capsicum annuum CAN.G484.82 PGAv.1.6.scaffold484 - View
Coffea canephora Cc03_g00340 Ubiquitin-40S ribosomal protein S27a chr3 + View
Citrus clementina Ciclev10024476m.g scaffold_3 + View
Ceratophyllum demersum CDE05G3133 3 + View
Ceratophyllum demersum CDE11G0337 9 + View
Cardamine hirsuta CARHR172580 ubiquitin 6 Chr5 + View
Chenopodium quinoa AUR62024571 UBI3: Ubiquitin-40S ribosomal protein S27a C_Quinoa_Scaffold_1992 + View
Chenopodium quinoa AUR62011737 UBI3: Ubiquitin-40S ribosomal protein S27a C_Quinoa_Scaffold_2008 + View
Capsella rubella Carub.0004s2984 K02977//K08770 - small subunit ribosomal protein S27Ae (RP-S27Ae, RPS27A) // ubiquitin C (UBC) scaffold_4 + View
Capsella rubella Carub.0005s2897 K02977 - small subunit ribosomal protein S27Ae (RP-S27Ae, RPS27A) scaffold_5 + View
Davidia involucrata Dinv29533 GWHABJS00000014 - View
Davidia involucrata Dinv33157 GWHABJS00000010 - View
Durio zibethinus Duzib138G1069 NW_019167893.1 + View
Durio zibethinus Duzib133G0109 NW_019167938.1 + View
Erythranthe guttata Migut.D00031 scaffold_4 + View
Eutrema salsugineum Thhalv10006290m.g K02977 - small subunit ribosomal protein S27Ae (RP-S27Ae, RPS27A) scaffold_19 - View
Eutrema salsugineum Thhalv10001668m.g K02977 - small subunit ribosomal protein S27Ae (RP-S27Ae, RPS27A) scaffold_22 + View
Gossypium hirsutum Gohir.D07G134800 K02977 - small subunit ribosomal protein S27Ae (RP-S27Ae, RPS27A) D07 - View
Gossypium hirsutum Gohir.D11G111600 K02977 - small subunit ribosomal protein S27Ae (RP-S27Ae, RPS27A) D11 + View
Gossypium hirsutum Gohir.A07G130400 K02977 - small subunit ribosomal protein S27Ae (RP-S27Ae, RPS27A) A07 - View
Gossypium hirsutum Gohir.A12G121600 K02977 - small subunit ribosomal protein S27Ae (RP-S27Ae, RPS27A) A12 + View
Gossypium hirsutum Gohir.D12G125200 K02977 - small subunit ribosomal protein S27Ae (RP-S27Ae, RPS27A) D12 + View
Gossypium raimondii Gorai.008G136200 Chr08 + View
Gossypium raimondii Gorai.001G146500 Chr01 - View
Lupinus albus Lalb_Chr06g0167061 K02977 - small subunit ribosomal protein S27Ae (RP-S27Ae, RPS27A) Lalb_Chr06 - View
Lonicera japonica Lj6P699T22 GWHAAZE00000006 + View
Lonicera japonica Lj3P838T61 GWHAAZE00000003 - View
Magnolia biondii MBI18_g28886_MAGBIO AED:0.17 Chr18 + View
Manihot esculenta Manes.01G232900 Chromosome01 - View
Nelumbo nucifera Nn3g21865 chr3 - View
Olea europaea Oeu044748.1 chr16 - View
Oryza sativa ssp. japonica Os01g0328400 Ubiquitin. chr01 - View
Papaver somniferum PSO210G4615 NC_039359.1 + View
Papaver somniferum PSO761G0613 NW_020622381.1 + View
Populus trichocarpa Potri.002G190000 K02977//K08770 - small subunit ribosomal protein S27Ae (RP-S27Ae, RPS27A) // ubiquitin C (UBC) Chr02 - View
Rhododendron simsii Rhsim04G0245900 chr04 - View
Simmondsia chinensis Sc05g0000150 GWHAASQ00000005 + View
Schrenkiella parvula Sp4g29090 K02977 - small subunit ribosomal protein S27Ae (RP-S27Ae, RPS27A) ch4-6 + View
Schrenkiella parvula Sp5g01140 K02977 - small subunit ribosomal protein S27Ae (RP-S27Ae, RPS27A) ch5-1 - View
Solanum tuberosum PGSC0003DMG400005199 40S ribosomal protein S27a ST4.03ch01 - View
Trochodendron aralioides TAR629G0452 group0 - View
Trochodendron aralioides TAR362G0646 group17 - View
Trochodendron aralioides TAR633G2822 group2 - View
Theobroma cacao Thecc.01G322000 Chromosome_1 - View
Tarenaya hassleriana THA.LOC104802131 ubiquitin-40S ribosomal protein S27a-2 NW_010970490.1 + View
Tarenaya hassleriana THA.LOC104817441 ubiquitin-40S ribosomal protein S27a-2-like NW_010965946.1 + View
Tripterygium wilfordii TWI59G0680 NC_052248.1 + View
Tripterygium wilfordii TWI14G1343 NC_052249.1 + View
Vanilla planifolia HPP92_017029 Ribosomal protein S27a / Ubiquitin family protein *** CM028157.1 - View