Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0024289 hypothetical protein CISIN_1g000127mg [Citrus sinensis] Chr10 - View
CSS0016548 DNA binding protein, putative [Ricinus communis] Chr6 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr6.2192 chr6 + View
Acer truncatum Atru.chr11.2012 chr11 + View
Actinidia chinensis Actinidia15041 Lachesis_group12 + View
Actinidia chinensis Actinidia13514 Lachesis_group16 - View
Actinidia chinensis Actinidia06029 Lachesis_group11 - View
Arabidopsis lyrata AL3G10710 scaffold_3 - View
Avicennia marina MSTRG.7892 ScioBoG_102841_HRSCAF_103114 + View
Amaranthus hybridus Ah.16g106640 Methyl-CpG-binding domain-containing protein 9 (AtMBD9) (MBD09) (EC 2.3.1.48) (Histone acetyl transferase MBD9) (Methyl-CpG-binding protein MBD9) AmaHy_arrow1_Scaffold_16 + View
Aquilegia oxysepala Aqoxy3G02993 CHR03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.50RNEG PTHR14140//PTHR14140:SF29 - E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED // METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 arahy.Tifrunner.gnm1.Arahy.05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.YCXM3R PF00628//PF01429 - PHD-finger (PHD) // Methyl-CpG binding domain (MBD) arahy.Tifrunner.gnm1.Arahy.15 + View
Arabidopsis thaliana AT3G01460 methyl-CPG-binding domain 9 Encodes a protein with a methyl-CpG-binding domain. Has sequence similarity to human MBD proteins. Involved in the modification of the FLC chromatin acetylation state to affect FLC expression. Mutants show an early flowering%2C and enhanced shoot branching phenotypes. methyl-CPG-binding domain 9 (MBD9)%3B FUNCTIONS IN: methyl-CpG binding%2C DNA binding%3B INVOLVED IN: photoperiodism%2C flowering%2C secondary shoot formation%2C regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C FY-rich%2C C-terminal (InterPro:IPR003889)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C FY-rich%2C N-terminal (InterPro:IPR003888)%2C DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%2C Methyl-CpG DNA binding (InterPro:IPR001739)%2C Zinc finger%2C PHD-finger (InterPro:IPR019787)%3B BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT1G77250.1)%3B Has 6416 Blast hits to 3988 proteins in 224 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4085%3B Fungi - 602%3B Plants - 1260%3B Viruses - 0%3B Other Eukaryotes - 469 (source: NCBI BLink). Chr3 + View
Brassica napus C09p75140 C09 - View
Brassica napus A05p44550 A05 - View
Brassica oleracea BolC5t35150H C5 + View
Brassica rapa BraA05t23202Z A05 + View
Beta vulgaris EL10Ac2g03352 PTHR14140//PTHR14140:SF29 - E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED // METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 Chr2_EL10_PGA_scaffold6 + View
Cannabis sativa CANSAT64G0328 NC_044379.1 + View
Cicer arietinum L. Ca_04206_v3 Ca_LG2_v3 - View
Corylus avellana Haze_14661 Similar to MBD9: Methyl-CpG-binding domain-containing protein 9 (Arabidopsis thaliana OX%3D3702) 5 + View
Corylus avellana Haze_12169 Similar to MBD9: Methyl-CpG-binding domain-containing protein 9 (Arabidopsis thaliana OX%3D3702) 9 + View
Coffea canephora Cc11_g14600 Putative Methyl-CpG-binding domain-containing protein 9 chr11 + View
Citrus clementina Ciclev10014026m.g scaffold_2 + View
Citrus clementina Ciclev10030471m.g scaffold_4 - View
Ceratophyllum demersum CDE10G0339 8 + View
Carpinus fangiana Cfa007435 Cfa03 - View
Cardamine hirsuta CARHR075500 methyl-CPG-binding domain 9 Chr3 - View
Carya illinoinensis CiPaw.04G024200 PF00439//PF00628//PF01429//PF05965//PF15612 - Bromodomain (Bromodomain) // PHD-finger (PHD) // Methyl-CpG binding domain (MBD) // F/Y rich C-terminus (FYRC) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) Chr04 + View
Carya illinoinensis CiPaw.03G037100 PTHR14140:SF29 - METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 Chr03 + View
Citrullus lanatus ClCG10G014330 Methyl-CpG-binding domain 9 CG_Chr10 - View
Cucumis melo MELO3C009946.2 methyl-CpG-binding domain-containing protein 9 chr04 - View
Capsella rubella Carub.0003s0064 PTHR14140//PTHR14140:SF29 - E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED // METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 scaffold_3 - View
Cucumis sativus L. CsaV3_3G042270 methyl-CpG-binding domain-containing protein 9 chr3 + View
Daucus carota DCAR_031098 hypothetical protein DCARv2_Chr9 + View
Daucus carota DCAR_007093 hypothetical protein DCARv2_Chr2 - View
Davidia involucrata Dinv35052 GWHABJS00000012 + View
Davidia involucrata Dinv24865 GWHABJS00000018 - View
Davidia involucrata Dinv33502 GWHABJS00000014 - View
Durio zibethinus Duzib147G1510 NW_019168470.1 + View
Erigeron canadensis ECA232G4683 Conyza_canadensis_scaffold:2 + View
Eucalyptus grandis Eucgr.I01818 Chr09 - View
Erythranthe guttata Migut.H00129 scaffold_8 - View
Eutrema salsugineum Thhalv10019872m.g PTHR14140:SF29 - METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 scaffold_13 + View
Fragaria x ananassa FAN02G2799 PTHR14140//PTHR14140:SF29 - E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED // METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 Fvb6-4 + View
Fragaria x ananassa FAN09G4608 PF00439//PF00628//PF01429//PF05965//PF15614 - Bromodomain (Bromodomain) // PHD-finger (PHD) // Methyl-CpG binding domain (MBD) // F/Y rich C-terminus (FYRC) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) Fvb6-2 - View
Fragaria vesca FvH4_6g50560 PTHR14140//PTHR14140:SF29 - E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED // METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 Fvb6 + View
Gossypium hirsutum Gohir.A09G026000 PTHR14140//PTHR14140:SF29 - E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED // METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 A09 + View
Gossypium hirsutum Gohir.D09G025300 PTHR14140//PTHR14140:SF29 - E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED // METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 D09 + View
Glycine max Glyma.13G170000 PTHR14140//PTHR14140:SF29 - E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED // METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 Gm13 - View
Glycine max Glyma.19G010200 PTHR14140//PTHR14140:SF29 - E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED // METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 Gm19 - View
Gossypium raimondii Gorai.006G029600 Chr06 + View
Hydrangea macrophylla Hma1.2p1_0802F.1_g220440 Hma1.2p1_0802F.1 - View
Lupinus albus Lalb_Chr06g0176091 PF00628//PF01429//PF15612 - PHD-finger (PHD) // Methyl-CpG binding domain (MBD) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) Lalb_Chr06 - View
Lupinus albus Lalb_Chr21g0319411 PF00628//PF01429//PF15612 - PHD-finger (PHD) // Methyl-CpG binding domain (MBD) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) Lalb_Chr21 + View
Lupinus albus Lalb_Chr02g0160031 2.3.1.48 - Histone acetyltransferase Lalb_Chr02 + View
Lotus japonicus Lj2g0012220 PTHR14140:SF29 - METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 chr2 + View
Lonicera japonica Lj7C591T5 GWHAAZE00000007 + View
Lonicera japonica Lj6C805G5 GWHAAZE00000006 + View
Lactuca sativa Lsat_1_v5_gn_4_181301 Lsat_1_v8_lg_4 + View
Lactuca sativa Lsat_1_v5_gn_8_157680 PF00628//PF01429//PF05965//PF15612 - PHD-finger (PHD) // Methyl-CpG binding domain (MBD) // F/Y rich C-terminus (FYRC) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) Lsat_1_v8_lg_8 - View
Malus domestica MD09G1035200 methyl-CPG-binding domain 9 Chr09 - View
Malus domestica MD17G1035500 methyl-CPG-binding domain 9 Chr17 - View
Medicago truncatula Medtr6g007650 methyl-CpG-binding domain protein chr6 - View
Nelumbo nucifera Nn3g16906 chr3 - View
Nelumbo nucifera Nn4g22811 chr4 - View
Punica granatum PGR142G1415 NC_045128.1 + View
Prunus persica Prupe.3G283100 PTHR14140:SF29 - METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 Pp03 + View
Papaver somniferum PSO832G1186 NC_039367.1 + View
Phaseolus vulgaris Phvul.004G017600 PTHR14140:SF29 - METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 Chr04 - View
Quercus lobata QL02p076799 CM012294 - View
Quercus lobata QL03p061451 3 - View
Rosa chinensis RcHm_v2.0_Chr2g0171081 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim10G0023100 chr10 - View
Rhododendron simsii Rhsim12G0121100 chr12 - View
Salix brachista Sabra17G0060500 GWHAAZH00000017 + View
Sechium edule Sed0022584 LG06 - View
Schrenkiella parvula Sp3g00610 PTHR14140//PTHR14140:SF29 - E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED // METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 ch3-1 - View
Solanum pennellii Sopen05g001650 Encodes a protein with a methyl-CpG-binding domain. Has sequence similarity to human MBD proteins. Involved in the modification of the FLC chromatin acetylation state to affect FLC expression. Mutants show an early flowering, and enhanced shoot branching phenotypes. | methyl-CPG-binding domain 9 (MBD9) | FUNCTIONS IN: methyl-CpG binding, DNA binding | INVOLVED IN: photoperiodism, flowering, secondary shoot formation, regulation of transcription, DNA-dependent | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site , Zinc finger, RING-type , FY-rich, C-terminal , Zinc finger, PHD-type , FY-rich, N-terminal , DNA-binding, integrase-type , Zinc finger, FYVE/PHD-type , Methyl-CpG DNA binding , Zinc finger, PHD-finger | BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein Spenn-ch05 - View
Trochodendron aralioides TAR629G0276 group0 + View
Trochodendron aralioides TAR371G0580 group13 - View
Theobroma cacao Thecc.04G008000 Methyl-CpG-binding domain-containing protein 9 Chromosome_4 + View
Tarenaya hassleriana THA.LOC104822384 methyl-CpG-binding domain-containing protein 9 NW_010966665.1 + View
Trifolium pratense TPR.G2296 Tp57577_TGAC_v2_LG2 - View
Tripterygium wilfordii TWI12G0214 NC_052243.1 - View
Vaccinium macrocarpon vmacro16257 Similar to MBD9: Methyl-CpG-binding domain-containing protein 9 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro05815 Similar to MBD9: Methyl-CpG-binding domain-containing protein 9 (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0464G0152 CM024077.1 - View
Vitis vinifera GSVIVG01020232001 chr1 - View
Vitis vinifera GSVIVG01032492001 chr14 - View