Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0007761 PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Vitis vinifera] Chr2 - View
CSS0036451 PREDICTED: ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like [Vitis vinifera] Chr1 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G8240 LG-7 + View
Aethionema arabicum Aa31LG1G820 LG-1 + View
Acer truncatum Atru.chr9.2258 chr9 + View
Acer truncatum Atru.chr11.1821 chr11 - View
Acer truncatum Atru.chr11.1780 chr11 - View
Actinidia chinensis Actinidia34995 Lachesis_group2 - View
Actinidia chinensis Actinidia04902 Lachesis_group1 - View
Arabidopsis lyrata AL6G26170 scaffold_6 - View
Arabidopsis lyrata AL5G12600 scaffold_5 + View
Arabidopsis lyrata AL1G38670 scaffold_1 + View
Arabidopsis lyrata AL1G26100 scaffold_1 - View
Avicennia marina MSTRG.23025 ScioBoG_3703_HRSCAF_3719 - View
Avicennia marina MSTRG.702 ScioBoG_102831_HRSCAF_103044 + View
Avicennia marina MSTRG.4424 ScioBoG_102837_HRSCAF_103074 + View
Amaranthus hybridus Ah.11g048460 Pentatricopeptide repeat-containing protein At1g74600, chloroplastic AmaHy_arrow1_Scaffold_11 - View
Amaranthus hybridus Ah.02g131040 Pentatricopeptide repeat-containing protein At4g18520, chloroplastic (Protein PIGMENT-DEFICIENT MUTANT 1) (Protein SEEDLING LETHAL 1) AmaHy_arrow1_Scaffold_2 - View
Aquilegia oxysepala Aqoxy3G03222 CHR03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.M3W608 PTHR11240:SF19 - F7A19.32 PROTEIN-RELATED arahy.Tifrunner.gnm1.Arahy.13 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.8S8XL0 PF01535//PF03083//PF13041//PF14432 - PPR repeat (PPR) // Sugar efflux transporter for intercellular exchange (MtN3_slv) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) arahy.Tifrunner.gnm1.Arahy.07 - View
Arabidopsis thaliana AT1G14210 Ribonuclease T2 family protein Ribonuclease T2 family protein%3B FUNCTIONS IN: ribonuclease T2 activity%2C endoribonuclease activity%2C RNA binding%3B INVOLVED IN: response to salt stress%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568)%2C Ribonuclease T2%2C active site (InterPro:IPR018188)%3B BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1)%3B Has 2321 Blast hits to 2320 proteins in 411 species: Archae - 0%3B Bacteria - 245%3B Metazoa - 291%3B Fungi - 229%3B Plants - 1455%3B Viruses - 6%3B Other Eukaryotes - 95 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT1G26820 ribonuclease 3 Encodes ribonuclease RNS3. ribonuclease 3 (RNS3)%3B FUNCTIONS IN: ribonuclease T2 activity%2C endoribonuclease activity%2C RNA binding%3B INVOLVED IN: aging%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568)%2C Ribonuclease T2%2C active site (InterPro:IPR018188)%3B BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1)%3B Has 2544 Blast hits to 2543 proteins in 498 species: Archae - 0%3B Bacteria - 415%3B Metazoa - 284%3B Fungi - 227%3B Plants - 1506%3B Viruses - 7%3B Other Eukaryotes - 105 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT5G15300 Pentatricopeptide repeat (PPR) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G29230.1)%3B Has 37071 Blast hits to 13818 proteins in 252 species: Archae - 0%3B Bacteria - 21%3B Metazoa - 136%3B Fungi - 146%3B Plants - 36104%3B Viruses - 0%3B Other Eukaryotes - 664 (source: NCBI BLink). Chr5 - View
Amborella trichopoda ATR0564G020 AmTr_v1.0_scaffold00010 + View
Brassica carinata BcaB08g34378 ChrB08 - View
Brassica carinata BcaB05g24861 ChrB05 - View
Brassica carinata BcaC08g46984 ChrC08 - View
Brassica carinata BcaC04g18959 ChrC04 + View
Brassica napus C07p33610 C07 + View
Brassica napus A02p33200 A02 + View
Brassica napus C02p31980 C02 - View
Brassica napus A02p19450 A02 - View
Brassica napus C07p45270 C07 - View
Brassica napus A10p23520 A10 + View
Brassica napus A07p40370 A07 - View
Brassica napus A03p47170 A03 - View
Brassica napus C06p48720 C06 - View
Brassica napus A09p62330 A09 + View
Brassica oleracea BolC6t39904H C6 - View
Brassica oleracea BolC7t45050H C7 - View
Brassica oleracea BolC2t11194H C2 + View
Brassica rapa BraA07t31578Z A07 - View
Brassica rapa BraA10t44418Z A10 + View
Brassica rapa BraA02t06984Z A02 - View
Brassica rapa BraA09t41598Z A09 + View
Beta vulgaris EL10Ac6g13210 PTHR11240//PTHR11240:SF20 - RIBONUCLEASE T2 // SUBFAMILY NOT NAMED Chr6_EL10_PGA_scaffold0 + View
Beta vulgaris EL10Ac5g10998 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr5_EL10_PGA_scaffold2 + View
Capsicum annuum CAN.G628.10 PGAv.1.6.scaffold628 + View
Cannabis sativa CANSAT80G2801 NC_044372.1 - View
Corylus avellana Haze_07294 Similar to PCMP-H71: Pentatricopeptide repeat-containing protein At1g74630 (Arabidopsis thaliana OX%3D3702) 4 - View
Coffea canephora Cc04_g15170 Putative Pentatricopeptide repeat-containing protein At5g48910 chr4 + View
Citrus clementina Ciclev10011507m.g scaffold_6 - View
Carpinus fangiana Cfa007557 Cfa03 - View
Carpinus fangiana Cfa018910 Cfa08 - View
Cardamine hirsuta CARHR025040 Pentatricopeptide repeat-containing protein Chr1 + View
Carya illinoinensis CiPaw.11G043500 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr11 - View
Carya illinoinensis CiPaw.12G013800 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr12 - View
Citrullus lanatus ClCG05G024240 Pentatricopeptide repeat-containing family protein CG_Chr05 - View
Citrullus lanatus ClCG09G018090 Pentatricopeptide repeat-containing family protein CG_Chr09 + View
Cucumis melo MELO3C001979.2 pentatricopeptide repeat-containing protein At1g74630 chr12 - View
Cucumis melo MELO3C002185.2 Pentatricopeptide repeat-containing protein chr12 - View
Cucumis melo MELO3C012100.2 ribonuclease 3-like chr10 - View
Carica papaya Cpa.g.sc14.100 supercontig_14 - View
Carica papaya Cpa.g.sc111.4 supercontig_111 + View
Carica papaya Cpa.g.sc17.236 supercontig_17 - View
Chenopodium quinoa AUR62008421 PCMP-H76: Pentatricopeptide repeat-containing protein At3g47530 C_Quinoa_Scaffold_3422 + View
Capsella rubella Carub.0001s1390 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 scaffold_1 - View
Capsella rubella Carub.0006s1349 PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) scaffold_6 - View
Capsella rubella Carub.0001s2415 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 scaffold_1 + View
Cucumis sativus L. CsaV3_1G005460 Pentatricopeptide repeat chr1 + View
Daucus carota DCAR_016547 hypothetical protein DCARv2_Chr5 - View
Daucus carota DCAR_031017 hypothetical protein DCARv2_Chr9 - View
Daucus carota DCAR_007156 hypothetical protein DCARv2_Chr2 + View
Davidia involucrata Dinv06535 GWHABJS00000012 - View
Davidia involucrata Dinv33763 GWHABJS00000014 - View
Durio zibethinus Duzib264G0315 NW_019167960.1 - View
Durio zibethinus Duzib264G0626 NW_019167960.1 + View
Durio zibethinus Duzib205G0661 NW_019168381.1 + View
Durio zibethinus Duzib268G1309 NW_019168270.1 - View
Durio zibethinus Duzib068G0420 NW_019167838.1 - View
Erigeron canadensis ECA247G0694 Conyza_canadensis_scaffold:7 + View
Eucalyptus grandis Eucgr.K02412 Chr11 - View
Eucalyptus grandis Eucgr.K02455 Chr11 + View
Erythranthe guttata Migut.L01287 scaffold_12 - View
Erythranthe guttata Migut.I00175 scaffold_9 - View
Eutrema salsugineum Thhalv10004863m.g PTHR11240//PTHR11240:SF20 - RIBONUCLEASE T2 // SUBFAMILY NOT NAMED scaffold_6 - View
Eutrema salsugineum Thhalv10015396m.g PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) scaffold_2 - View
Eutrema salsugineum Thhalv10008717m.g 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 scaffold_5 - View
Fragaria x ananassa FAN13G2112 PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb5-2 + View
Fragaria x ananassa FAN17G2829 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb4-2 - View
Fragaria x ananassa FAN08G2911 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb5-3 + View
Fragaria x ananassa FAN17G2920 K01166 - ribonuclease T2 [EC:3.1.27.1] (E3.1.27.1) Fvb4-2 + View
Fragaria vesca FvH4_5g14900 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb5 - View
Gossypium hirsutum Gohir.A12G177100 PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) A12 - View
Gossypium hirsutum Gohir.A05G366600 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) A05 - View
Gossypium hirsutum Gohir.D12G179600 PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) D12 - View
Gossypium hirsutum Gohir.D03G093200 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) D03 + View
Gossypium hirsutum Gohir.A03G066700 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) A03 + View
Gossypium hirsutum Gohir.A09G020300 A09 + View
Glycine max Glyma.17G099500 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Gm17 + View
Glycine max Glyma.18G259800 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Gm18 - View
Gossypium raimondii Gorai.010G131200 Chr10 - View
Gossypium raimondii Gorai.003G097100 Chr03 + View
Gossypium raimondii Gorai.006G023300 Chr06 + View
Gossypium raimondii Gorai.008G192700 Chr08 - View
Helianthus annuus HanXRQChr09g0265241 Probable pentatricopeptide repeat (PPR) superfamily protein HanXRQChr09 + View
Hydrangea macrophylla Hma1.2p1_0735F.1_g210590 Hma1.2p1_0735F.1 - View
Lupinus albus Lalb_Chr07g0178031 PF13041 - PPR repeat family (PPR_2) Lalb_Chr07 + View
Lupinus albus Lalb_Chr13g0303221 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Lalb_Chr13 - View
Lupinus albus Lalb_Chr17g0340711 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Lalb_Chr17 + View
Lotus japonicus Lj2g0015722 PF01535//PF14432 - PPR repeat (PPR) // DYW family of nucleic acid deaminases (DYW_deaminase) chr2 - View
Lotus japonicus Lj2g0003212 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) chr2 + View
Lonicera japonica Lj4P110T41 GWHAAZE00000004 + View
Lonicera japonica Lj9P463T9 GWHAAZE00000009 + View
Lactuca sativa Lsat_1_v5_gn_8_48141 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Lsat_1_v8_lg_8 + View
Lactuca sativa Lsat_1_v5_gn_1_13321 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Lsat_1_v8_lg_1 - View
Lactuca sativa Lsat_1_v5_gn_4_9761 PTHR11240//PTHR11240:SF20 - RIBONUCLEASE T2 // SUBFAMILY NOT NAMED Lsat_1_v8_lg_4 + View
Lactuca sativa Lsat_1_v5_gn_4_108841 Lsat_1_v8_lg_4 + View
Malus domestica MD09G1051700 Pentatricopeptide repeat (PPR) superfamily protein Chr09 - View
Malus domestica MD16G1072300 ribonuclease 1 Chr16 - View
Malus domestica MD06G1192600 pentatricopeptide (PPR) repeat-containing protein Chr06 - View
Manihot esculenta Manes.01G091500 Chromosome01 - View
Manihot esculenta Manes.15G172600 Chromosome15 + View
Manihot esculenta Manes.14G078400 Chromosome14 + View
Medicago truncatula Medtr4g108660 PPR containing plant-like protein chr4 + View
Nelumbo nucifera Nn4g23148 chr4 + View
Nicotiana tabacum Nitab4.5_0000014g0040 Ribonuclease T2-like Nitab4.5_0000014 + View
Olea europaea Oeu062102.1 chr10 + View
Olea europaea Oeu010869.1 chr18 - View
Punica granatum PGR119G0008 NC_045132.1 - View
Punica granatum PGR044G0849 NC_045134.1 - View
Populus trichocarpa Potri.017G083900 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr17 - View
Populus trichocarpa Potri.008G086700 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 Chr08 + View
Phaseolus vulgaris Phvul.004G044000 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr04 + View
Quercus lobata QL03p016243 3 - View
Quercus lobata QL03p065428 3 + View
Quercus lobata QL03p063618 3 - View
Quercus lobata QL10p016725 10 - View
Rosa chinensis RcHm_v2.0_Chr7g0181141 RcHm_v2.0_Chr7 + View
Rhododendron simsii Rhsim10G0036200 chr10 + View
Striga asiatica SGA_v2.0_scaffold114G31904 scaffold114 + View
Salix brachista Sabra08G0064600 GWHAAZH00000008 + View
Salix brachista Sabra10G0128400 GWHAAZH00000010 - View
Salix brachista Sabra17G0074100 GWHAAZH00000017 - View
Salix brachista Sabra15G0087600 GWHAAZH00000015 + View
Simmondsia chinensis Sc04g0002600 GWHAASQ00000004 - View
Simmondsia chinensis Sc10g0009820 GWHAASQ00000010 + View
Simmondsia chinensis Sc04g0008070 GWHAASQ00000004 - View
Sechium edule Sed0027655 LG11 - View
Sechium edule Sed0017935 LG03 + View
Sechium edule Sed0020784 LG08 - View
Solanum lycopersicum Solyc05g013200.1 Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A2G2YDB1_CAPAN) SL4.0ch05 + View
Schrenkiella parvula Sp2g24780 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) ch2-4 - View
Schrenkiella parvula Sp1g21880 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) ch1-1 + View
Solanum pennellii Sopen05g007940 Encodes a chloroplast RNA editing factor. | ORGANELLE TRANSCRIPT PROCESSING 85 (OTP85) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch05 + View
Selenicereus undatus Hund02656 Scaffold_33678 + View
Trochodendron aralioides TAR371G0300 group13 + View
Theobroma cacao Thecc.04G073300 Tetratricopeptide repeat (TPR)-like superfamily protein Chromosome_4 + View
Theobroma cacao Thecc.04G082600 Pentatricopeptide repeat (PPR) superfamily protein Chromosome_4 - View
Theobroma cacao Thecc.02G350000 Pentatricopeptide repeat (PPR) superfamily protein Chromosome_2 + View
Tarenaya hassleriana THA.LOC104813875 pentatricopeptide repeat-containing protein At1g74600%2C chloroplastic NW_010965373.1 + View
Tarenaya hassleriana THA.LOC104805163 ribonuclease 1 NW_010961290.1 + View
Tarenaya hassleriana THA.LOC104821017 pentatricopeptide repeat-containing protein At5g15340%2C mitochondrial NW_010966372.1 + View
Trifolium pratense TPR.G15906 Tp57577_TGAC_v2_LG5 - View
Tripterygium wilfordii TWI60G1198 NC_052246.1 + View
Tripterygium wilfordii TWI81G0143 NC_052251.1 + View
Utricularia gibba unitig_26.g9644 unitig_26 - View
Vaccinium macrocarpon vmacro16551 Similar to PCMP-E69: Pentatricopeptide repeat-containing protein At1g74600, chloroplastic (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0251G1532 CM024069.1 + View
Vigna mungo VMungo1215G2427 CM024074.1 + View
Vigna mungo VMungo1215G0975 CM024074.1 + View
Vitis vinifera GSVIVG01008015001 chr17 - View
Zea mays Zm00001eb276940 Zm00001e030605 6 + View
Zea mays Zm00001eb041380 Zm00001e004121 Selenium-binding protein-like 1 + View