Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0048459 PREDICTED: probable nucleolar protein 5-2 [Vitis vinifera] Chr3 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG11G8870 LG-11 + View
Aethionema arabicum Aa31LG5G15380 LG-5 + View
Actinidia chinensis Actinidia05751 Lachesis_group20 - View
Actinidia chinensis Actinidia30911 Lachesis_group0 - View
Actinidia chinensis Actinidia33828 Lachesis_group7 - View
Arabidopsis lyrata AL3G15450 scaffold_3 - View
Amaranthus hybridus Ah.06g192840 Probable nucleolar protein 5-2 (MAR-binding NOP56/58 homolog 2) (Nucleolar protein 58-2) AmaHy_arrow1_Scaffold_6 + View
Aquilegia oxysepala Aqoxy2G03112 CHR02 + View
Arabidopsis thaliana AT5G27120 NOP56-like pre RNA processing ribonucleoprotein SAR DNA-binding protein%2C putative%2C strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696%3B contains Pfam profile PF01798: Putative snoRNA binding domain%3B has similarity to MAR binding NOP58 protein NOP56-like pre RNA processing ribonucleoprotein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleolus%3B CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein%2C snoRNA-binding domain (InterPro:IPR002687)%2C NOP5%2C N-terminal (InterPro:IPR012974)%2C NOSIC (InterPro:IPR012976)%3B BEST Arabidopsis thaliana protein match is: NOP56-like pre RNA processing ribonucleoprotein (TAIR:AT3G05060.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Arabidopsis thaliana AT3G05060 NOP56-like pre RNA processing ribonucleoprotein SAR DNA-binding protein%2C putative%2C strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696%3B contains Pfam profile PF01798: Putative snoRNA binding domain%3B encodes NOP58-like protein NOP56-like pre RNA processing ribonucleoprotein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleolus%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein%2C snoRNA-binding domain (InterPro:IPR002687)%2C NOP5%2C N-terminal (InterPro:IPR012974)%2C NOSIC (InterPro:IPR012976)%3B BEST Arabidopsis thaliana protein match is: NOP56-like pre RNA processing ribonucleoprotein (TAIR:AT5G27120.1)%3B Has 39712 Blast hits to 18529 proteins in 1244 species: Archae - 275%3B Bacteria - 3520%3B Metazoa - 14574%3B Fungi - 4183%3B Plants - 1688%3B Viruses - 262%3B Other Eukaryotes - 15210 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaB04g19651 ChrB04 + View
Brassica carinata BcaC04g23700 ChrC04 - View
Brassica carinata BcaC03g17771 ChrC03 + View
Brassica napus A09p05140 A09 + View
Brassica napus A06p37730 A06 - View
Brassica napus C07p40500 C07 + View
Brassica napus C09p05550 C09 + View
Brassica oleracea BolC7t44585H C7 + View
Brassica oleracea BolC9t53484H C9 + View
Brassica oleracea BolC2t11855H C2 + View
Brassica rapa BraA09t36153Z A09 + View
Brassica rapa BraA06t26692Z A06 - View
Beta vulgaris EL10Ac4g09229 K14565 - nucleolar protein 58 (NOP58) Chr4_EL10_PGA_scaffold1 + View
Cardamine hirsuta CARHR079390 Nucleolar protein 5 Chr3 - View
Cardamine hirsuta CARHR185770 Nucleolar protein 5 Chr6 + View
Carya illinoinensis CiPaw.07G010000 K14565 - nucleolar protein 58 (NOP58) Chr07 + View
Citrullus lanatus ClCG02G016300 Nucleolar protein 5 CG_Chr02 - View
Cucumis melo MELO3C004350.2 Nucleolar protein Nop56, putative, expressed chr05 - View
Chenopodium quinoa AUR62000941 NOP5-2: Probable nucleolar protein 5-2 C_Quinoa_Scaffold_2088 - View
Capsella rubella Carub.0006s2535 K14565 - nucleolar protein 58 (NOP58) scaffold_6 - View
Capsella rubella Carub.0003s0431 K14565 - nucleolar protein 58 (NOP58) scaffold_3 - View
Cucumis sativus L. CsaV3_2G004440 Nucleolar protein 58 chr2 + View
Davidia involucrata Dinv03085 GWHABJS00000002 - View
Davidia involucrata Dinv04272 GWHABJS00000005 - View
Davidia involucrata Dinv03355 GWHABJS00000002 + View
Durio zibethinus Duzib128G0087 NW_019168481.1 - View
Durio zibethinus Duzib177G0757 NW_019168004.1 + View
Eucalyptus grandis Eucgr.H04416 Chr08 + View
Eutrema salsugineum Thhalv10003966m.g K14565 - nucleolar protein 58 (NOP58) scaffold_6 - View
Eutrema salsugineum Thhalv10020473m.g K14565 - nucleolar protein 58 (NOP58) scaffold_13 + View
Fragaria x ananassa FAN02G4374 K14565 - nucleolar protein 58 (NOP58) Fvb6-4 + View
Fragaria x ananassa FAN09G2140 K14565 - nucleolar protein 58 (NOP58) Fvb6-2 - View
Fragaria x ananassa FAN05G4463 K14565 - nucleolar protein 58 (NOP58) Fvb6-3 + View
Fragaria x ananassa FAN05G0120 K14565 - nucleolar protein 58 (NOP58) Fvb6-3 - View
Fragaria x ananassa FAN09G3633 K14565 - nucleolar protein 58 (NOP58) Fvb6-2 - View
Fragaria x ananassa FAN14G1669 K14565 - nucleolar protein 58 (NOP58) Fvb6-1 - View
Fragaria vesca FvH4_6g04090 K14565 - nucleolar protein 58 (NOP58) Fvb6 + View
Gossypium hirsutum Gohir.A08G213700 K14565 - nucleolar protein 58 (NOP58) A08 - View
Gossypium hirsutum Gohir.D11G267300 K14565 - nucleolar protein 58 (NOP58) D11 + View
Gossypium hirsutum Gohir.D13G177100 K14565 - nucleolar protein 58 (NOP58) D13 + View
Gossypium hirsutum Gohir.A11G257400 K14565 - nucleolar protein 58 (NOP58) A11 + View
Gossypium hirsutum Gohir.D08G230800 K14565 - nucleolar protein 58 (NOP58) D08 - View
Gossypium hirsutum Gohir.A13G171550 K14565 - nucleolar protein 58 (NOP58) A13 + View
Gossypium raimondii Gorai.013G202500 Chr13 + View
Gossypium raimondii Gorai.007G287100 Chr07 + View
Gossypium raimondii Gorai.004G245100 Chr04 - View
Lonicera japonica Lj7A481T49 GWHAAZE00000007 + View
Lonicera japonica Lj9A673T47 GWHAAZE00000009 - View
Malus domestica MD04G1216600 NOP56-like pre RNA processing ribonucleoprotein Chr04 - View
Malus domestica MD12G1233200 NOP56-like pre RNA processing ribonucleoprotein Chr12 - View
Manihot esculenta Manes.08G126100 Chromosome08 - View
Manihot esculenta Manes.09G158900 Chromosome09 + View
Prunus persica Prupe.6G336300 K14565 - nucleolar protein 58 (NOP58) Pp06 - View
Populus trichocarpa Potri.013G032300 K14565 - nucleolar protein 58 (NOP58) Chr13 - View
Populus trichocarpa Potri.005G045600 K14565 - nucleolar protein 58 (NOP58) Chr05 - View
Quercus lobata QL03p001096 3 + View
Rosa chinensis RcHm_v2.0_Chr3g0452641 RcHm_v2.0_Chr3 + View
Salix brachista Sabra13G0032100 GWHAAZH00000013 - View
Salix brachista Sabra05G0041900 GWHAAZH00000005 - View
Sechium edule Sed0022250 LG11 + View
Sechium edule Sed0008911 LG08 + View
Schrenkiella parvula Sp2g20400 K14565 - nucleolar protein 58 (NOP58) ch2-4 + View
Schrenkiella parvula Sp3g03890 K14565 - nucleolar protein 58 (NOP58) ch3-1 - View
Selenicereus undatus Hund22086 Scaffold_33680 - View
Theobroma cacao Thecc.05G292200 NOP56-like pre RNA processing ribonucleoprotein Chromosome_5 + View
Tarenaya hassleriana THA.LOC104821697 probable nucleolar protein 5-2 NW_010966542.1 + View
Tarenaya hassleriana THA.LOC104818657 probable nucleolar protein 5-2 NW_010966177.1 + View
Tripterygium wilfordii TWI12G1393 NC_052243.1 + View
Tripterygium wilfordii TWI36G0019 NC_052237.1 + View
Vaccinium macrocarpon vmacro19664 Similar to NOP5-2: Probable nucleolar protein 5-2 (Arabidopsis thaliana OX%3D3702) chr5_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01021905001 chr14 - View
Vitis vinifera GSVIVG01017800001 chr5 + View