Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0028701 ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Camellia sinensis] Chr6 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G3490 LG-2 - View
Acer truncatum Atru.chr1.1703 chr1 + View
Actinidia chinensis Actinidia14891 Lachesis_group14 + View
Actinidia chinensis Actinidia16653 Lachesis_group4 - View
Arabidopsis lyrata AL7G52150 scaffold_7 + View
Arabidopsis lyrata AL2G25460 scaffold_2 - View
Amaranthus hybridus Ah.16g101810 AmaHy_arrow1_Scaffold_16 - View
Amaranthus hybridus Ah.10g037800 Ribulose bisphosphate carboxylase small chain 2, chloroplastic (RuBisCO small subunit 2) (EC 4.1.1.39) AmaHy_arrow1_Scaffold_10 - View
Aquilegia oxysepala Aqoxy3G00296 CHR03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.K6N5RU K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) arahy.Tifrunner.gnm1.Arahy.04 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.HCT4KE K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) arahy.Tifrunner.gnm1.Arahy.14 - View
Arabidopsis thaliana AT1G67090 ribulose bisphosphate carboxylase small chain 1A Encodes a member of the Rubisco small subunit (RBCS) multigene family: RBCS1A (At1g67090)%2C RBCS1B (At5g38430)%2C RBCS2B (At5g38420)%2C and RBCS3B (At5g38410). Functions to yield sufficient Rubisco content for leaf photosynthetic capacity. ribulose bisphosphate carboxylase small chain 1A (RBCS1A)%3B FUNCTIONS IN: ribulose-bisphosphate carboxylase activity%2C copper ion binding%3B INVOLVED IN: carbon fixation%2C response to cold%2C response to blue light%2C response to red light%2C response to far red light%3B LOCATED IN: in 10 components%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C seedling growth%3B CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase%2C small chain (InterPro:IPR000894)%3B BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1)%3B Has 1998 Blast hits to 1975 proteins in 459 species: Archae - 0%3B Bacteria - 424%3B Metazoa - 0%3B Fungi - 0%3B Plants - 969%3B Viruses - 0%3B Other Eukaryotes - 605 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT5G38410 Ribulose bisphosphate carboxylase (small chain) family protein Encodes a member of the Rubisco small subunit (RBCS) multigene family: RBCS1A (At1g67090)%2C RBCS1B (At5g38430)%2C RBCS2B (At5g38420)%2C and RBCS3B (At5g38410). Functions to yield sufficient Rubisco content for leaf photosynthetic capacity. Ribulose bisphosphate carboxylase (small chain) family protein%3B FUNCTIONS IN: ribulose-bisphosphate carboxylase activity%3B INVOLVED IN: carbon fixation%2C response to blue light%2C response to red light%2C response to far red light%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: seedling growth%3B CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase%2C small chain (InterPro:IPR000894)%3B BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaB05g24235 ChrB05 - View
Brassica carinata BcaC03g14794 ChrC03 - View
Brassica carinata BcaC02g09646 ChrC02 - View
Brassica napus C02p22410 C02 - View
Brassica napus C04p45030 C04 - View
Brassica oleracea BolC4t26081H C4 - View
Brassica oleracea BolC2t08396H C2 - View
Brassica rapa BraA02t06452Z A02 - View
Beta vulgaris EL10Ac2g04573 K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Chr2_EL10_PGA_scaffold6 + View
Capsicum annuum CAN.G625.14 PGAv.1.6.scaffold625 + View
Cannabis sativa CANSAT78G2503 NC_044376.1 - View
Cicer arietinum L. Ca_04054_v3 Ca_LG2_v3 - View
Corylus avellana Haze_17486 Similar to RBCS1: Ribulose bisphosphate carboxylase small chain, chloroplastic (Betula pendula OX%3D3505) 7 + View
Corylus avellana Haze_14148 Similar to RBCS1: Ribulose bisphosphate carboxylase small chain, chloroplastic (Betula pendula OX%3D3505) 5 + View
Citrus clementina Ciclev10012893m.g scaffold_6 - View
Carpinus fangiana Cfa007927 Cfa03 - View
Carpinus fangiana Cfa018593 Cfa07 - View
Cardamine hirsuta CARHR059540 Ribulose bisphosphate carboxylase small chain Chr2 - View
Carya illinoinensis CiPaw.03G061200 PTHR31262:SF4 - RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A, CHLOROPLASTIC-RELATED Chr03 + View
Citrullus lanatus ClCG05G022680 Ribulose bisphosphate carboxylase small chain CG_Chr05 - View
Cucumis melo MELO3C012252.2 Ribulose bisphosphate carboxylase small chain chr10 - View
Corchorus olitorius COL.COLO4_09321 hypothetical protein AWUE01014222.1 + View
Carica papaya Cpa.g.sc282.14 supercontig_282 - View
Chenopodium quinoa AUR62008991 RBCS-1: Ribulose bisphosphate carboxylase small chain 1, chloroplastic C_Quinoa_Scaffold_1710 + View
Chenopodium quinoa AUR62023307 RBCS3: Ribulose bisphosphate carboxylase small chain 3, chloroplastic C_Quinoa_Scaffold_1352 - View
Capsella rubella Carub.0007s3758 4.1.1.39 - Ribulose-bisphosphate carboxylase / RuBP carboxylase scaffold_7 + View
Cucumis sativus L. CsaV3_5G034360 Ribulose bisphosphate carboxylase small chain chr5 + View
Davidia involucrata Dinv15671 GWHABJS00000006 - View
Davidia involucrata Dinv31637 GWHABJS00000008 - View
Davidia involucrata Dinv28103 GWHABJS00000019 - View
Davidia involucrata Dinv34825 GWHABJS00000012 - View
Durio zibethinus Duzib133G0331 NW_019167938.1 - View
Erigeron canadensis ECA232G3191 Conyza_canadensis_scaffold:2 - View
Eucalyptus grandis Eucgr.J01502 Chr10 + View
Eucalyptus grandis Eucgr.K02223 Chr11 + View
Eucalyptus grandis Eucgr.B03013 Chr02 - View
Erythranthe guttata Migut.H00214 scaffold_8 + View
Eutrema salsugineum Thhalv10019199m.g K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) scaffold_9 + View
Eutrema salsugineum Thhalv10027955m.g K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) scaffold_14 + View
Eutrema salsugineum Thhalv10019202m.g K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) scaffold_9 - View
Fragaria x ananassa FAN07G1973 4.1.1.39 - Ribulose-bisphosphate carboxylase / RuBP carboxylase Fvb4-4 + View
Fragaria x ananassa FAN12G2562 K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Fvb4-3 + View
Fragaria vesca FvH4_4g27330 4.1.1.39 - Ribulose-bisphosphate carboxylase / RuBP carboxylase Fvb4 - View
Gossypium hirsutum Gohir.A11G163200 K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) A11 - View
Gossypium hirsutum Gohir.D07G180900 K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) D07 + View
Gossypium hirsutum Gohir.D11G169600 K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) D11 - View
Glycine max Glyma.18G296900 4.1.1.39 - Ribulose-bisphosphate carboxylase / RuBP carboxylase Gm18 - View
Glycine max Glyma.19G046600 K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Gm19 + View
Glycine max Glyma.13G046200 K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Gm13 - View
Gossypium raimondii Gorai.001G201800 Chr01 + View
Gossypium raimondii Gorai.007G181300 Chr07 - View
Helianthus annuus HanXRQChr11g0325011 Probable ribulose bisphosphate carboxylase small chain 4, chloroplastic HanXRQChr11 + View
Hydrangea macrophylla Hma1.2p1_1109F.1_g257960 Hma1.2p1_1109F.1 + View
Lupinus albus Lalb_Chr04g0257441 PTHR31262//PTHR31262:SF4 - FAMILY NOT NAMED // RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A, CHLOROPLASTIC-RELATED Lalb_Chr04 + View
Lupinus albus Lalb_Chr10g0100001 K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Lalb_Chr10 - View
Lupinus albus Lalb_Chr10g0091251 K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Lalb_Chr10 + View
Lotus japonicus Lj2g0016211 K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) chr2 - View
Lotus japonicus Lj1g0001864 K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) chr1 + View
Lonicera japonica Lj6A758T18 GWHAAZE00000006 - View
Lonicera japonica Lj4A191T52 GWHAAZE00000004 - View
Lactuca sativa Lsat_1_v5_gn_4_153980 K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Lsat_1_v8_lg_4 + View
Malus domestica MD17G1244400 ribulose bisphosphate carboxylase small chain 1A Chr17 + View
Malus domestica MD13G1041800 ribulose bisphosphate carboxylase small chain 1A Chr13 - View
Malus domestica MD09G1252100 ribulose bisphosphate carboxylase small chain 1A Chr09 + View
Malus domestica MD16G1042700 Ribulose bisphosphate carboxylase (small chain) family protein Chr16 - View
Manihot esculenta Manes.05G137400 Chromosome05 + View
Medicago truncatula Medtr6g018300 ribulose bisphosphate carboxylase small chain chr6 + View
Medicago truncatula Medtr7g007120 ribulose bisphosphate carboxylase small chain chr7 + View
Nelumbo nucifera Nn4g23841 chr4 + View
Nelumbo nucifera Nn3g17846 chr3 + View
Nicotiana tabacum Nitab4.5_0000912g0280 Ribulose bisphosphate carboxylase small chain, domain, Ribulose bisphosphate carboxylase, small chain Nitab4.5_0000912 - View
Nicotiana tabacum Nitab4.5_0002207g0050 Ribulose bisphosphate carboxylase small chain, domain, Ribulose bisphosphate carboxylase, small chain, Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal Nitab4.5_0002207 + View
Petunia axillaris Peaxi162Scf00394g00425 Ribulose bisphosphate carboxylase small chain, chloroplastic Peaxi162Scf00394 + View
Petunia axillaris Peaxi162Scf00104g00083 Ribulose bisphosphate carboxylase small chain 8B, chloroplastic Peaxi162Scf00104 + View
Punica granatum PGR042G0189 NC_045130.1 - View
Prunus persica Prupe.1G311400 PTHR31262:SF4 - RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A, CHLOROPLASTIC-RELATED Pp01 + View
Pisum sativum Psat3g204960 RuBisCO small subunit signature chr3LG5 + View
Populus trichocarpa Potri.004G100000 PTHR31262//PTHR31262:SF4 - FAMILY NOT NAMED // RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A, CHLOROPLASTIC-RELATED Chr04 - View
Populus trichocarpa Potri.017G114600 PTHR31262//PTHR31262:SF4 - FAMILY NOT NAMED // RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A, CHLOROPLASTIC-RELATED Chr17 + View
Quercus lobata QL02p052407 CM012294 + View
Rosa chinensis RcHm_v2.0_Chr4g0435151 RcHm_v2.0_Chr4 - View
Rhododendron simsii Rhsim10G0066900 chr10 + View
Rhododendron simsii Rhsim12G0085000 chr12 + View
Salix brachista Sabra04G0079900 GWHAAZH00000004 + View
Salix brachista Sabra17G0094900 GWHAAZH00000017 + View
Simmondsia chinensis Sc10g0001200 GWHAASQ00000010 - View
Simmondsia chinensis Sc11g0008310 GWHAASQ00000011 + View
Solanum lycopersicum Solyc02g085950.4 cell wall protein X77373 SL4.0ch02 + View
Solanum lycopersicum Solyc02g063150.3 RuBP carboxylase small subunit SL4.0ch02 + View
Solanum lycopersicum Solyc03g034220.3 Tomato RuBP carboxylase small subunit SL4.0ch03 + View
Schrenkiella parvula Sp5g22020 K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) ch5-6 - View
Solanum pennellii Sopen02g014220 Ribulose bisphosphate carboxylase small chain 3, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3) - Solanum tuberosum (Potato), Ribulose bisphosphate carboxylase (small chain) family protein | FUNCTIONS IN: ribulose-bisphosphate carboxylase activity | INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light | LOCATED IN: in 7 components | EXPRESSED IN: 14 plant structures | EXPRESSED DURING: seedling growth | CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain | BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein Spenn-ch02 + View
Solanum pennellii Sopen02g030610 Ribulose bisphosphate carboxylase small chain 2C, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2C) - Solanum tuberosum (Potato), Ribulose bisphosphate carboxylase (small chain) family protein | FUNCTIONS IN: ribulose-bisphosphate carboxylase activity | INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light | LOCATED IN: thylakoid, chloroplast ribulose bisphosphate carboxylase complex, apoplast, chloroplast, membrane | EXPRESSED IN: 12 plant structures | CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain | BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein Spenn-ch02 + View
Solanum pennellii Sopen03g007000 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) - Solanum tuberosum (Potato), ribulose bisphosphate carboxylase small chain 1A (RBCS1A) | FUNCTIONS IN: ribulose-bisphosphate carboxylase activity, copper ion binding | INVOLVED IN: carbon fixation, response to cold, response to blue light, response to red light, response to far red light | LOCATED IN: in 7 components | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth | CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain | BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein Spenn-ch03 + View
Solanum tuberosum PGSC0003DMG400012666 Ribulose bisphosphate carboxylase small chain 2C, chloroplastic ST4.03ch02 + View
Solanum tuberosum PGSC0003DMG400024182 Ribulose bisphosphate carboxylase small chain C, chloroplastic ST4.03ch02 + View
Selenicereus undatus Hund13721 Scaffold_33679 - View
Selenicereus undatus Hund16152 Scaffold_33677 + View
Trochodendron aralioides TAR371G0931 group13 - View
Trochodendron aralioides TAR374G0087 group12 - View
Trochodendron aralioides TAR622G0312 group8 - View
Theobroma cacao Thecc.04G134500 Ribulose bisphosphate carboxylase (small chain) family protein Chromosome_4 - View
Theobroma cacao Thecc.03G035100 Ribulose bisphosphate carboxylase (small chain) family protein Chromosome_3 + View
Tarenaya hassleriana THA.LOC104821932 ribulose bisphosphate carboxylase small chain%2C chloroplastic-like NW_010966617.1 - View
Trifolium pratense TPR.G32462 Tp57577_TGAC_v2_scaf_193 - View
Tripterygium wilfordii TWI77G0921 NC_052236.1 - View
Vaccinium macrocarpon vmacro05559 Similar to RBCS-1A: Ribulose bisphosphate carboxylase small chain 1A, chloroplastic (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro01386 Similar to RBCS: Ribulose bisphosphate carboxylase small chain, chloroplastic (Pyrus pyrifolia OX%3D3767) chr1_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01008288001 chr17 - View