Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G13060 LG-3 - View
Actinidia chinensis Actinidia07546 Lachesis_group18 + View
Arabidopsis lyrata AL8G33090 scaffold_8 - View
Avicennia marina MSTRG.5939 ScioBoG_102839_HRSCAF_103093 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.8TE3EA K10777 - DNA ligase 4 (LIG4, DNL4) arahy.Tifrunner.gnm1.Arahy.14 + View
Arabidopsis thaliana AT5G57160 DNA ligase IV Encodes the Arabidopsis orthologue of the yeast and mammalian DNA ligase IV. Involved in the repair of DNA damage but%2C unlike in yeast%2C not required for T-DNA integration. Interacts with the Arabidopsis homologue of XRCC4. ATLIG4%3B FUNCTIONS IN: protein binding%2C DNA ligase (ATP) activity%3B INVOLVED IN: double-strand break repair%2C response to X-ray%2C response to DNA damage stimulus%3B LOCATED IN: intracellular%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C DNA ligase%2C N-terminal (InterPro:IPR012308)%2C ATP dependent DNA ligase%2C central (InterPro:IPR012310)%2C ATP dependent DNA ligase%2C C-terminal (InterPro:IPR012309)%2C ATP-dependent DNA ligase%2C conserved site (InterPro:IPR016059)%2C ATP-dependent DNA ligase (InterPro:IPR000977)%2C BRCT (InterPro:IPR001357)%3B BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1)%3B Has 7656 Blast hits to 6618 proteins in 1076 species: Archae - 317%3B Bacteria - 1869%3B Metazoa - 2250%3B Fungi - 907%3B Plants - 304%3B Viruses - 214%3B Other Eukaryotes - 1795 (source: NCBI BLink). Chr5 - View
Amborella trichopoda ATR0626G236 AmTr_v1.0_scaffold00025 - View
Brassica carinata BcaC04g19995 ChrC04 + View
Brassica napus C09p48970 C09 - View
Brassica napus A10p14520 A10 - View
Brassica oleracea BolC9t57749H C9 - View
Brassica rapa BraA10t43541Z A10 - View
Cannabis sativa CANSAT11G0507 NC_044377.1 - View
Cicer arietinum L. Ca_02111_v3 Ca_LG1_v3 + View
Corylus avellana Haze_22027 Similar to LIG4: DNA ligase 4 (Arabidopsis thaliana OX%3D3702) 3 + View
Coffea canephora Cc06_g20790 DNA ligase 4 chr6 - View
Citrus clementina Ciclev10007283m.g scaffold_1 - View
Carpinus fangiana Cfa013456 Cfa05 + View
Cardamine hirsuta CARHR270950 DNA ligase Chr8 - View
Carya illinoinensis CiPaw.08G032200 K10777 - DNA ligase 4 (LIG4, DNL4) Chr08 - View
Citrullus lanatus ClCG11G011720 DNA ligase CG_Chr11 - View
Capsella rubella Carub.0008s1767 K10777 - DNA ligase 4 (LIG4, DNL4) scaffold_8 - View
Cucumis sativus L. CsaV3_2G008760 DNA ligase chr2 + View
Davidia involucrata Dinv25455 GWHABJS00000001 + View
Durio zibethinus Duzib150G1331 NW_019167882.1 + View
Erigeron canadensis ECA236G2032 Conyza_canadensis_scaffold:3 - View
Eucalyptus grandis Eucgr.C00108 Chr03 - View
Erythranthe guttata Migut.J00793 scaffold_10 - View
Eutrema salsugineum Thhalv10012474m.g K10777 - DNA ligase 4 (LIG4, DNL4) scaffold_2 + View
Fragaria x ananassa FAN17G2239 K10777 - DNA ligase 4 (LIG4, DNL4) Fvb4-2 - View
Fragaria x ananassa FAN12G1367 K10777 - DNA ligase 4 (LIG4, DNL4) Fvb4-3 + View
Fragaria x ananassa FAN22G2150 PTHR10459:SF72 - DNA LIGASE 4 Fvb4-1 - View
Gossypium hirsutum Gohir.A13G208300 K10777 - DNA ligase 4 (LIG4, DNL4) A13 - View
Glycine max Glyma.15G166700 K10777 - DNA ligase 4 (LIG4, DNL4) Gm15 + View
Glycine max Glyma.09G060066 PTHR10459//PTHR10459:SF72 - DNA LIGASE // DNA LIGASE 4 Gm09 + View
Lupinus albus Lalb_Chr08g0231931 K10777 - DNA ligase 4 (LIG4, DNL4) Lalb_Chr08 + View
Lotus japonicus Lj6g0004756 K10777 - DNA ligase 4 (LIG4, DNL4) chr6 - View
Lactuca sativa Lsat_1_v5_gn_8_69120 K10777 - DNA ligase 4 (LIG4, DNL4) Lsat_1_v8_lg_8 - View
Magnolia biondii MBI16_g47869_MAGBIO AED:0.21 Chr16 + View
Malus domestica MD16G1247900 DNA ligase IV Chr16 - View
Medicago truncatula Medtr2g038030 DNA ligase chr2 + View
Punica granatum PGR142G2375 NC_045128.1 + View
Prunus persica Prupe.1G074600 K10777 - DNA ligase 4 (LIG4, DNL4) Pp01 - View
Populus trichocarpa Potri.018G141900 K10777 - DNA ligase 4 (LIG4, DNL4) Chr18 - View
Phaseolus vulgaris Phvul.009G235800 Chr09 - View
Rosa chinensis RcHm_v2.0_Chr4g0399311 RcHm_v2.0_Chr4 - View
Rhododendron simsii Rhsim01G0114900 chr01 + View
Salix brachista Sabra18G0116000 GWHAAZH00000018 - View
Sechium edule Sed0026596 LG11 + View
Schrenkiella parvula Sp6g18890 K10777 - DNA ligase 4 (LIG4, DNL4) ch6-6 - View
Trochodendron aralioides TAR383G0023 group10 + View
Theobroma cacao Thecc.09G186600 DNA ligase IV Chromosome_9 + View
Tripterygium wilfordii TWI63G1718 NC_052240.1 - View
Vigna mungo VMungo1309G1314 CM024072.1 + View
Vitis vinifera GSVIVG01029314001 chr11 + View