Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|---|
Aethionema arabicum | Aa31LG3G13060 | LG-3 | - | View | |
Actinidia chinensis | Actinidia07546 | Lachesis_group18 | + | View | |
Arabidopsis lyrata | AL8G33090 | scaffold_8 | - | View | |
Avicennia marina | MSTRG.5939 | ScioBoG_102839_HRSCAF_103093 | - | View | |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.8TE3EA | K10777 - DNA ligase 4 (LIG4, DNL4) | arahy.Tifrunner.gnm1.Arahy.14 | + | View |
Arabidopsis thaliana | AT5G57160 | DNA ligase IV Encodes the Arabidopsis orthologue of the yeast and mammalian DNA ligase IV. Involved in the repair of DNA damage but%2C unlike in yeast%2C not required for T-DNA integration. Interacts with the Arabidopsis homologue of XRCC4. ATLIG4%3B FUNCTIONS IN: protein binding%2C DNA ligase (ATP) activity%3B INVOLVED IN: double-strand break repair%2C response to X-ray%2C response to DNA damage stimulus%3B LOCATED IN: intracellular%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C DNA ligase%2C N-terminal (InterPro:IPR012308)%2C ATP dependent DNA ligase%2C central (InterPro:IPR012310)%2C ATP dependent DNA ligase%2C C-terminal (InterPro:IPR012309)%2C ATP-dependent DNA ligase%2C conserved site (InterPro:IPR016059)%2C ATP-dependent DNA ligase (InterPro:IPR000977)%2C BRCT (InterPro:IPR001357)%3B BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1)%3B Has 7656 Blast hits to 6618 proteins in 1076 species: Archae - 317%3B Bacteria - 1869%3B Metazoa - 2250%3B Fungi - 907%3B Plants - 304%3B Viruses - 214%3B Other Eukaryotes - 1795 (source: NCBI BLink). | Chr5 | - | View |
Amborella trichopoda | ATR0626G236 | AmTr_v1.0_scaffold00025 | - | View | |
Brassica carinata | BcaC04g19995 | ChrC04 | + | View | |
Brassica napus | C09p48970 | C09 | - | View | |
Brassica napus | A10p14520 | A10 | - | View | |
Brassica oleracea | BolC9t57749H | C9 | - | View | |
Brassica rapa | BraA10t43541Z | A10 | - | View | |
Cannabis sativa | CANSAT11G0507 | NC_044377.1 | - | View | |
Cicer arietinum L. | Ca_02111_v3 | Ca_LG1_v3 | + | View | |
Corylus avellana | Haze_22027 | Similar to LIG4: DNA ligase 4 (Arabidopsis thaliana OX%3D3702) | 3 | + | View |
Coffea canephora | Cc06_g20790 | DNA ligase 4 | chr6 | - | View |
Citrus clementina | Ciclev10007283m.g | scaffold_1 | - | View | |
Carpinus fangiana | Cfa013456 | Cfa05 | + | View | |
Cardamine hirsuta | CARHR270950 | DNA ligase | Chr8 | - | View |
Carya illinoinensis | CiPaw.08G032200 | K10777 - DNA ligase 4 (LIG4, DNL4) | Chr08 | - | View |
Citrullus lanatus | ClCG11G011720 | DNA ligase | CG_Chr11 | - | View |
Capsella rubella | Carub.0008s1767 | K10777 - DNA ligase 4 (LIG4, DNL4) | scaffold_8 | - | View |
Cucumis sativus L. | CsaV3_2G008760 | DNA ligase | chr2 | + | View |
Davidia involucrata | Dinv25455 | GWHABJS00000001 | + | View | |
Durio zibethinus | Duzib150G1331 | NW_019167882.1 | + | View | |
Erigeron canadensis | ECA236G2032 | Conyza_canadensis_scaffold:3 | - | View | |
Eucalyptus grandis | Eucgr.C00108 | Chr03 | - | View | |
Erythranthe guttata | Migut.J00793 | scaffold_10 | - | View | |
Eutrema salsugineum | Thhalv10012474m.g | K10777 - DNA ligase 4 (LIG4, DNL4) | scaffold_2 | + | View |
Fragaria x ananassa | FAN17G2239 | K10777 - DNA ligase 4 (LIG4, DNL4) | Fvb4-2 | - | View |
Fragaria x ananassa | FAN12G1367 | K10777 - DNA ligase 4 (LIG4, DNL4) | Fvb4-3 | + | View |
Fragaria x ananassa | FAN22G2150 | PTHR10459:SF72 - DNA LIGASE 4 | Fvb4-1 | - | View |
Gossypium hirsutum | Gohir.A13G208300 | K10777 - DNA ligase 4 (LIG4, DNL4) | A13 | - | View |
Glycine max | Glyma.15G166700 | K10777 - DNA ligase 4 (LIG4, DNL4) | Gm15 | + | View |
Glycine max | Glyma.09G060066 | PTHR10459//PTHR10459:SF72 - DNA LIGASE // DNA LIGASE 4 | Gm09 | + | View |
Lupinus albus | Lalb_Chr08g0231931 | K10777 - DNA ligase 4 (LIG4, DNL4) | Lalb_Chr08 | + | View |
Lotus japonicus | Lj6g0004756 | K10777 - DNA ligase 4 (LIG4, DNL4) | chr6 | - | View |
Lactuca sativa | Lsat_1_v5_gn_8_69120 | K10777 - DNA ligase 4 (LIG4, DNL4) | Lsat_1_v8_lg_8 | - | View |
Magnolia biondii | MBI16_g47869_MAGBIO | AED:0.21 | Chr16 | + | View |
Malus domestica | MD16G1247900 | DNA ligase IV | Chr16 | - | View |
Medicago truncatula | Medtr2g038030 | DNA ligase | chr2 | + | View |
Punica granatum | PGR142G2375 | NC_045128.1 | + | View | |
Prunus persica | Prupe.1G074600 | K10777 - DNA ligase 4 (LIG4, DNL4) | Pp01 | - | View |
Populus trichocarpa | Potri.018G141900 | K10777 - DNA ligase 4 (LIG4, DNL4) | Chr18 | - | View |
Phaseolus vulgaris | Phvul.009G235800 | Chr09 | - | View | |
Rosa chinensis | RcHm_v2.0_Chr4g0399311 | RcHm_v2.0_Chr4 | - | View | |
Rhododendron simsii | Rhsim01G0114900 | chr01 | + | View | |
Salix brachista | Sabra18G0116000 | GWHAAZH00000018 | - | View | |
Sechium edule | Sed0026596 | LG11 | + | View | |
Schrenkiella parvula | Sp6g18890 | K10777 - DNA ligase 4 (LIG4, DNL4) | ch6-6 | - | View |
Trochodendron aralioides | TAR383G0023 | group10 | + | View | |
Theobroma cacao | Thecc.09G186600 | DNA ligase IV | Chromosome_9 | + | View |
Tripterygium wilfordii | TWI63G1718 | NC_052240.1 | - | View | |
Vigna mungo | VMungo1309G1314 | CM024072.1 | + | View | |
Vitis vinifera | GSVIVG01029314001 | chr11 | + | View |