Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0020208 PREDICTED: mediator of RNA polymerase II transcription subunit 33A isoform X1 [Vitis vinifera] Chr13 - View
CSS0022190 PREDICTED: mediator of RNA polymerase II transcription subunit 33A isoform X1 [Vitis vinifera] Chr9 + View
CSS0040442 PREDICTED: mediator of RNA polymerase II transcription subunit 33A isoform X1 [Vitis vinifera] Chr5 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr4.2583 chr4 - View
Acer truncatum Atru.chr5.1358 chr5 - View
Actinidia chinensis Actinidia24318 Lachesis_group24 + View
Actinidia chinensis Actinidia40196 Lachesis_group22 - View
Actinidia chinensis Actinidia00731 Lachesis_group19 - View
Actinidia chinensis Actinidia23469 Lachesis_group3 + View
Arabidopsis lyrata AL4G47710 scaffold_4 + View
Avicennia marina MSTRG.21575 ScioBoG_26769_HRSCAF_26899 - View
Avicennia marina MSTRG.3985 ScioBoG_102837_HRSCAF_103074 + View
Amaranthus hybridus Ah.08g212990 Mediator of RNA polymerase II transcription subunit 33B (Protein REDUCED EPIDERMAL FLUORESCENCE 4) (AtREF4) AmaHy_arrow1_Scaffold_8 - View
Amaranthus hybridus Ah.15g091720 Mediator of RNA polymerase II transcription subunit 33A (REF4-related 1 protein) (REF4-resembling 1 protein) AmaHy_arrow1_Scaffold_15 + View
Aquilegia oxysepala Aqoxy2G03236 CHR02 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.RT4QRX arahy.Tifrunner.gnm1.Arahy.16 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.KZ0R87 PTHR33739:SF5 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A arahy.Tifrunner.gnm1.Arahy.04 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.LE7RV4 PTHR33739:SF5 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A arahy.Tifrunner.gnm1.Arahy.11 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.05IDCI PTHR33739:SF5 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A arahy.Tifrunner.gnm1.Arahy.01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.IDT7Z9 arahy.Tifrunner.gnm1.Arahy.06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.H6APGL PTHR33739:SF5 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A arahy.Tifrunner.gnm1.Arahy.14 + View
Arabidopsis thaliana AT2G48110 reduced epidermal fluorescence 4 Encodes a novel protein of unknown function with homologs in non-seed plants. Sequence analysis predicts membrane spanning domains and a putative protein-protein interaction domain. Semi-dominant mutations display defects in phenylpropanoid accumulation suggesting a role in phenylpropanoid metabolism. It has been shown to physically associate with the conserved transcriptional coregulatory complex%2C Mediator%2C and is involved in the regulation of phenylpropanoid homeostasis. Acts redundantly with REF4/MED5b (At3g23590). Required for expression of some dark-upregulated genes. REDUCED EPIDERMAL FLUORESCENCE 4 (REF4)%3B BEST Arabidopsis thaliana protein match is: REF4-related 1 (TAIR:AT3G23590.1)%3B Has 140 Blast hits to 138 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 140%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr2 + View
Amborella trichopoda ATR0626G186 AmTr_v1.0_scaffold00025 - View
Brassica carinata BcaB02g08737 ChrB02 + View
Brassica carinata BcaC02g12564 ChrC02 + View
Brassica napus A05p00020 A05 - View
Brassica napus BNapus_Darmor_BZH_scaffold_188p00080 BNapus_Darmor_BZH_scaffold_188 + View
Beta vulgaris EL10Ac7g17204 PTHR33739:SF5 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A Chr7_EL10_PGA_scaffold5 - View
Cannabis sativa CANSAT78G1573 NC_044376.1 - View
Cicer arietinum L. Ca_00614_v3 Ca_LG1_v3 + View
Cicer arietinum L. Ca_08567_v3 Ca_LG3_v3 + View
Corylus avellana Haze_00972 Similar to MED33A: Mediator of RNA polymerase II transcription subunit 33A (Arabidopsis thaliana OX%3D3702) 1 - View
Corylus avellana Haze_04747 Similar to MED33B: Mediator of RNA polymerase II transcription subunit 33B (Arabidopsis thaliana OX%3D3702) 2 - View
Coffea canephora Cc03_g03030 REF4-related 1 chr3 + View
Coffea canephora Cc01_g19770 REF4-related 1 chr1 - View
Citrus clementina Ciclev10006738m.g scaffold_9 + View
Citrus clementina Ciclev10018517m.g scaffold_3 - View
Carpinus fangiana Cfa006103 Cfa02 + View
Carpinus fangiana Cfa015573 Cfa06 + View
Cardamine hirsuta CARHR143510 At3g23590-like protein Chr4 + View
Carya illinoinensis CiPaw.01G159200 PTHR33739//PTHR33739:SF5 - FAMILY NOT NAMED // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A Chr01 + View
Carya illinoinensis CiPaw.08G103100 PTHR33739//PTHR33739:SF4 - FAMILY NOT NAMED // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B Chr08 + View
Carya illinoinensis CiPaw.02G091000 PTHR33739:SF5 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A Chr02 + View
Citrullus lanatus ClCG06G005740 Mediator of RNA polymerase II transcription subunit 33A CG_Chr06 + View
Citrullus lanatus ClCG07G000090 At3g23590-like protein CG_Chr07 - View
Cucumis melo MELO3C021395.2 Mediator of RNA polymerase II transcription subunit 33A chr11 - View
Carica papaya Cpa.g.sc16.34 supercontig_16 - View
Chenopodium quinoa AUR62030055 MED33A: Mediator of RNA polymerase II transcription subunit 33A C_Quinoa_Scaffold_1447 + View
Chenopodium quinoa AUR62036795 MED33A: Mediator of RNA polymerase II transcription subunit 33A C_Quinoa_Scaffold_3080 - View
Capsella rubella Carub.0004s3082 PTHR33739//PTHR33739:SF4 - FAMILY NOT NAMED // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B scaffold_4 + View
Cucumis sativus L. CsaV3_6G018520 Mediator of rna polymerase ii transcription subunit 33a chr6 + View
Cucumis sativus L. CsaV3_6G036860 Mediator of RNA polymerase II transcription subunit 33A like chr6 + View
Daucus carota DCAR_012449 hypothetical protein DCARv2_Chr3 - View
Daucus carota DCAR_018405 hypothetical protein DCARv2_Chr5 + View
Daucus carota DCAR_030591 hypothetical protein DCARv2_Chr9 + View
Davidia involucrata Dinv32963 GWHABJS00000010 - View
Davidia involucrata Dinv38383 GWHABJS00000016 - View
Durio zibethinus Duzib138G1867 NW_019167893.1 + View
Durio zibethinus Duzib211G0420 NW_019168049.1 + View
Durio zibethinus Duzib133G0974 NW_019167938.1 + View
Erigeron canadensis ECA247G3467 Conyza_canadensis_scaffold:7 - View
Erigeron canadensis ECA248G1703 Conyza_canadensis_scaffold:9 + View
Eucalyptus grandis Eucgr.H01520 Chr08 + View
Erythranthe guttata Migut.G00257 scaffold_7 + View
Erythranthe guttata Migut.D00262 scaffold_4 + View
Eutrema salsugineum Thhalv10001284m.g PTHR33739:SF4 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B scaffold_22 + View
Fragaria x ananassa FAN12G3879 PTHR33739//PTHR33739:SF5 - FAMILY NOT NAMED // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A Fvb4-3 - View
Fragaria x ananassa FAN24G1998 PTHR33739//PTHR33739:SF4 - FAMILY NOT NAMED // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B Fvb2-2 + View
Fragaria x ananassa FAN07G0967 PTHR33739//PTHR33739:SF5 - FAMILY NOT NAMED // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A Fvb4-4 + View
Fragaria x ananassa FAN17G0588 PTHR33739:SF5 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A Fvb4-2 + View
Fragaria x ananassa FAN15G3626 PTHR33739//PTHR33739:SF4 - FAMILY NOT NAMED // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B Fvb2-4 - View
Fragaria x ananassa FAN22G2273 PTHR33739//PTHR33739:SF5 - FAMILY NOT NAMED // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A Fvb4-1 - View
Fragaria x ananassa FAN27G1317 PTHR33739:SF4 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B Fvb2-1 - View
Fragaria x ananassa FAN20G1787 PTHR33739:SF4 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B Fvb2-3 + View
Fragaria vesca FvH4_2g23980 PTHR33739//PTHR33739:SF4 - FAMILY NOT NAMED // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B Fvb2 - View
Gossypium hirsutum Gohir.D08G054700 PTHR33739//PTHR33739:SF4 - FAMILY NOT NAMED // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B D08 + View
Gossypium hirsutum Gohir.D11G125600 PTHR33739//PTHR33739:SF4 - FAMILY NOT NAMED // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B D11 + View
Gossypium hirsutum Gohir.A08G045000 PTHR33739//PTHR33739:SF4 - FAMILY NOT NAMED // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B A08 + View
Gossypium hirsutum Gohir.A11G120500 PTHR33739//PTHR33739:SF4 - FAMILY NOT NAMED // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B A11 + View
Gossypium hirsutum Gohir.A12G006200 PTHR33739//PTHR33739:SF4 - FAMILY NOT NAMED // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B A12 - View
Gossypium hirsutum Gohir.D12G005700 PTHR33739//PTHR33739:SF4 - FAMILY NOT NAMED // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B D12 - View
Glycine max Glyma.03G151100 Gm03 + View
Glycine max Glyma.13G209800 PTHR33739:SF5 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A Gm13 - View
Glycine max Glyma.19G153600 Gm19 + View
Glycine max Glyma.15G102800 PTHR33739:SF5 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A Gm15 + View
Gossypium raimondii Gorai.008G005500 Chr08 - View
Gossypium raimondii Gorai.007G134500 Chr07 + View
Helianthus annuus HanXRQChr10g0282901 Uncharacterized protein, conserved in plant genome(s), supported by expression data HanXRQChr10 - View
Lupinus albus Lalb_Chr18g0056021 PTHR33739//PTHR33739:SF5 - FAMILY NOT NAMED // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A Lalb_Chr18 + View
Lupinus albus Lalb_Chr20g0118371 PTHR33739:SF5 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A Lalb_Chr20 + View
Lotus japonicus Lj1g0017101 chr1 - View
Lotus japonicus Lj6g0018116 PTHR33739:SF5 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A chr6 + View
Lonicera japonica Lj2A1178G40 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_9_4461 PTHR33739:SF4 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B Lsat_1_v8_lg_9 + View
Lactuca sativa Lsat_1_v5_gn_5_187461 Lsat_1_v8_lg_5 + View
Magnolia biondii MBI17_g11997_MAGBIO AED:0.09 Chr17 + View
Malus domestica MD03G1269000 reduced epidermal fluorescence 4 Chr03 - View
Malus domestica MD13G1182100 REF4-related 1 Chr13 + View
Malus domestica MD11G1289800 reduced epidermal fluorescence 4 Chr11 - View
Malus domestica MD16G1182600 REF4-related 1 Chr16 + View
Manihot esculenta Manes.05G073300 Chromosome05 + View
Manihot esculenta Manes.03G185600 Chromosome03 - View
Manihot esculenta Manes.15G022100 Chromosome15 + View
Manihot esculenta Manes.01G210100 Chromosome01 - View
Medicago truncatula Medtr7g094550 mediator of RNA polymerase II transcription subunit 33A chr7 + View
Nelumbo nucifera Nn1g02140 chr1 + View
Nelumbo nucifera Nn4g26168 chr4 + View
Nicotiana tabacum Nitab4.5_0000295g0140 Unknown Nitab4.5_0000295 + View
Olea europaea Oeu011171.1 scaffold1424 - View
Olea europaea Oeu001433.1 scaffold1040 - View
Petunia axillaris Peaxi162Scf00104g00329 Mediator of RNA polymerase II transcription subunit 33A Peaxi162Scf00104 - View
Petunia axillaris Peaxi162Scf00095g01015 Mediator of RNA polymerase II transcription subunit 33A Peaxi162Scf00095 + View
Punica granatum PGR004G1665 NC_045131.1 + View
Prunus persica Prupe.1G150000 Pp01 + View
Prunus persica Prupe.8G245000 PTHR33739:SF4 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B Pp08 - View
Populus trichocarpa Potri.002G215600 PTHR33739//PTHR33739:SF4 - FAMILY NOT NAMED // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B Chr02 - View
Phaseolus vulgaris Phvul.006G154900 PTHR33739:SF5 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A Chr06 - View
Phaseolus vulgaris Phvul.001G148600 Chr01 + View
Quercus lobata QL12p022706 12 - View
Quercus lobata QL06p005458 6 - View
Rosa chinensis RcHm_v2.0_Chr6g0291641 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim04G0207700 chr04 - View
Rhododendron simsii Rhsim13G0022400 chr13 + View
Rhododendron simsii Rhsim01G0276300 chr01 - View
Striga asiatica SGA_v2.0_scaffold1G00447 scaffold1 + View
Striga asiatica SGA_v2.0_scaffold11G05794 scaffold11 + View
Salvia bowleyana SalBow4G2265 GWHASIU00000008 + View
Salix brachista Sabra10G0011500 GWHAAZH00000010 - View
Salix brachista Sabra14G0104400 GWHAAZH00000014 + View
Salix brachista Sabra08G0159800 GWHAAZH00000008 - View
Salix brachista Sabra02G0167900 GWHAAZH00000002 - View
Simmondsia chinensis Sc05g0005020 GWHAASQ00000005 - View
Simmondsia chinensis Sc13g0003890 GWHAASQ00000013 + View
Sechium edule Sed0014865 LG04 + View
Solanum lycopersicum Solyc09g064780.3 mediator of RNA polymerase II transcription subunit 33A-like (AHRD V3.3 *** A0A2I4F330_9ROSI) SL4.0ch09 + View
Solanum lycopersicum Solyc01g080200.3 mediator of RNA polymerase II transcription subunit 33A-like (AHRD V3.3 *** A0A2I4F330_9ROSI) SL4.0ch01 - View
Schrenkiella parvula Sp4g30030 PTHR33739:SF4 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33B ch4-6 + View
Solanum pennellii Sopen09g026460 REF4-related 1 (RFR1) | BEST Arabidopsis thaliana protein match is: reduced epidermal fluorescence 4 Spenn-ch09 + View
Solanum pennellii Sopen01g031980 REF4-related 1 (RFR1) | BEST Arabidopsis thaliana protein match is: reduced epidermal fluorescence 4 Spenn-ch01 - View
Solanum tuberosum PGSC0003DMG401000943 Conserved gene of unknown function ST4.03ch09 + View
Solanum tuberosum PGSC0003DMG400004351 Conserved gene of unknown function ST4.03ch01 + View
Selenicereus undatus Hund12205 Scaffold_33679 - View
Trochodendron aralioides TAR633G0959 group2 - View
Trochodendron aralioides TAR365G1253 group16 + View
Theobroma cacao Thecc.01G284000 REF4-related 1 Chromosome_1 - View
Theobroma cacao Thecc.04G220600 REF4-related 1 Chromosome_4 + View
Tarenaya hassleriana THA.LOC104802225 mediator of RNA polymerase II transcription subunit 33B isoform X1 NW_010970490.1 + View
Tripterygium wilfordii TWI09G0794 NC_052245.1 + View
Tripterygium wilfordii TWI59G1348 NC_052248.1 + View
Vaccinium macrocarpon vmacro08269 Similar to MED33A: Mediator of RNA polymerase II transcription subunit 33A (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro14937 Similar to MED33A: Mediator of RNA polymerase II transcription subunit 33A (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0540G0289 CM024075.1 + View
Vigna mungo VMungo1383G0239 CM024070.1 + View
Vitis vinifera GSVIVG01011094001 chr7 - View
Vitis vinifera GSVIVG01017879001 chr5 + View