Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0004352 PREDICTED: actin-related protein 4-like [Glycine max] Contig790 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Actinidia chinensis Actinidia35080 Lachesis_group2 - View
Arabidopsis lyrata AL1G30880 scaffold_1 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.DFGQ2J PTHR11937//PTHR11937:SF235 - ACTIN // ACTIN-LIKE PROTEIN 6A arahy.Tifrunner.gnm1.Arahy.13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.NI3B5C K11340 - actin-like protein 6A (ACTL6A, INO80K) arahy.Tifrunner.gnm1.Arahy.03 - View
Arabidopsis thaliana AT1G18450 actin-related protein 4 Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes%2C involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct%2C 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression%2C and resulted in strong pleiotropic phenotypes such as altered organization of plant organs%2C early flowering%2C delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes. actin-related protein 4 (ARP4)%3B FUNCTIONS IN: structural constituent of cytoskeleton%3B INVOLVED IN: long-day photoperiodism%2C flowering%2C chromatin organization%2C pollen sperm cell differentiation%3B LOCATED IN: nucleolus%2C nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000)%3B BEST Arabidopsis thaliana protein match is: actin-11 (TAIR:AT3G12110.1)%3B Has 13669 Blast hits to 13362 proteins in 2792 species: Archae - 2%3B Bacteria - 480%3B Metazoa - 5593%3B Fungi - 3430%3B Plants - 1457%3B Viruses - 2%3B Other Eukaryotes - 2705 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G73910 actin-related proteins 4A Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes%2C involved in chromatin-mediated gene regulation. actin-related proteins 4A (ARP4A)%3B CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000)%3B BEST Arabidopsis thaliana protein match is: actin-related protein 4 (TAIR:AT1G18450.1)%3B Has 8295 Blast hits to 8286 proteins in 1571 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 4071%3B Fungi - 1608%3B Plants - 922%3B Viruses - 2%3B Other Eukaryotes - 1688 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaC05g25737 ChrC05 + View
Brassica carinata BcaB07g31853 ChrB07 + View
Brassica napus A06p14500 A06 + View
Brassica rapa BraA06t24575Z A06 + View
Beta vulgaris EL10Ac5g11421 K11340 - actin-like protein 6A (ACTL6A, INO80K) Chr5_EL10_PGA_scaffold2 - View
Coffea canephora Cc04_g07390 Actin-related protein 4 chr4 - View
Citrus clementina Ciclev10020836m.g scaffold_3 - View
Cardamine hirsuta CARHR019060 actin-related protein 4 Chr1 + View
Cardamine hirsuta CARHR067020 actin-related protein 4 Chr2 + View
Carya illinoinensis CiPaw.15G127800 K11340 - actin-like protein 6A (ACTL6A, INO80K) Chr15 - View
Carya illinoinensis CiPaw.16G084900 K11340 - actin-like protein 6A (ACTL6A, INO80K) Chr16 - View
Citrullus lanatus ClCG06G014940 Actin-related protein CG_Chr06 + View
Cucumis melo MELO3C017295.2 Actin-related protein 4 chr02 + View
Daucus carota DCAR_011346 hypothetical protein DCARv2_Chr3 - View
Eucalyptus grandis Eucgr.B00704 Chr02 - View
Eutrema salsugineum Thhalv10007641m.g K11340 - actin-like protein 6A (ACTL6A, INO80K) scaffold_5 - View
Eutrema salsugineum Thhalv10018569m.g K11340 - actin-like protein 6A (ACTL6A, INO80K) scaffold_9 - View
Glycine max Glyma.05G232900 PTHR11937//PTHR11937:SF235 - ACTIN // ACTIN-LIKE PROTEIN 6A Gm05 - View
Lupinus albus Lalb_Chr05g0222631 K11340 - actin-like protein 6A (ACTL6A, INO80K) Lalb_Chr05 + View
Lonicera japonica Lj9C429T7 GWHAAZE00000009 + View
Nicotiana tabacum Nitab4.5_0000208g0190 Actin-related protein Nitab4.5_0000208 - View
Populus trichocarpa Potri.012G061300 K11340 - actin-like protein 6A (ACTL6A, INO80K) Chr12 + View
Simmondsia chinensis Sc04g0003650 GWHAASQ00000004 + View
Sechium edule Sed0017324 LG12 - View
Sechium edule Sed0004858 LG08 - View
Schrenkiella parvula Sp1g16390 K11340 - actin-like protein 6A (ACTL6A, INO80K) ch1-1 + View
Solanum pennellii Sopen12g017690 Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3 UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes. | actin-related protein 4 (ARP4) | FUNCTIONS IN: structural constituent of cytoskeleton | INVOLVED IN: long-day photoperiodism, flowering, chromatin organization, pollen sperm cell differentiation | LOCATED IN: nucleolus, nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Actin/actin-like | BEST Arabidopsis thaliana protein match is: actin-11 Spenn-ch12 + View
Solanum tuberosum PGSC0003DMG400021766 Conserved gene of unknown function ST4.03ch12 + View
Tripterygium wilfordii TWI15G1235 NC_052247.1 - View
Tripterygium wilfordii TWI81G0665 NC_052251.1 + View
Vaccinium macrocarpon vmacro16454 Similar to ARP4: Actin-related protein 4 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01008255001 chr17 + View