Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0041862 PREDICTED: pentatricopeptide repeat-containing protein At5g03800 [Vitis vinifera] Chr4 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Actinidia chinensis Actinidia06706 Lachesis_group22 - View
Actinidia chinensis Actinidia18579 Lachesis_group17 + View
Arabidopsis lyrata AL3G22080 scaffold_3 + View
Arabidopsis thaliana AT3G10610 Ribosomal S17 family protein Ribosomal S17 family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%2C ribosome%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e (InterPro:IPR001210)%2C Ribosomal protein S17e%2C conserved site (InterPro:IPR018273)%3B BEST Arabidopsis thaliana protein match is: Ribosomal S17 family protein (TAIR:AT2G05220.2)%3B Has 1007 Blast hits to 1007 proteins in 350 species: Archae - 195%3B Bacteria - 0%3B Metazoa - 361%3B Fungi - 145%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 179 (source: NCBI BLink). Chr3 + View
Arabidopsis thaliana AT5G03800 Pentatricopeptide repeat (PPR) superfamily protein Encodes a protein with a large central domain of 14 internal pentatricopeptide motifs (some degenerate) arranged in tandem. Mutations in this locus result in embryo lethality. EMBRYO DEFECTIVE 175 (EMB175)%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: embryo development ending in seed dormancy%3B LOCATED IN: chloroplast%2C membrane%3B EXPRESSED IN: root%2C flower%2C leaf%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G49170.1)%3B Has 41516 Blast hits to 13216 proteins in 205 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 24%3B Fungi - 21%3B Plants - 41054%3B Viruses - 0%3B Other Eukaryotes - 417 (source: NCBI BLink). Chr5 - View
Amborella trichopoda ATR0820G295 AmTr_v1.0_scaffold00040 + View
Amborella trichopoda ATR0820G219 AmTr_v1.0_scaffold00040 - View
Capsicum annuum CAN.G135.76 PGAv.1.6.scaffold135 - View
Cicer arietinum L. Ca_10469_v3 Ca_LG4_v3 + View
Corylus avellana Haze_02574 Similar to PCMP-H84: Putative pentatricopeptide repeat-containing protein At3g08820 (Arabidopsis thaliana OX%3D3702) 1 + View
Coffea canephora Cc06_g04910 Pentatricopeptide repeat-containing protein At5g03800 chr6 + View
Ceratophyllum demersum CDE06G0871 4 + View
Carpinus fangiana Cfa001739 Cfa01 + View
Capsella rubella Carub.0003s0984 K02962 - small subunit ribosomal protein S17e (RP-S17e, RPS17) scaffold_3 + View
Daucus carota DCAR_019056 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv20839 GWHABJS00000009 - View
Durio zibethinus Duzib106G0832 NW_019168492.1 - View
Fragaria x ananassa FAN02G1439 PF01535 - PPR repeat (PPR) Fvb6-4 + View
Fragaria x ananassa FAN14G1811 PF01535//PF12796//PF12854//PF13041//PF13812 - PPR repeat (PPR) // Ankyrin repeats (3 copies) (Ank_2) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Fvb6-1 - View
Gossypium hirsutum Gohir.D10G204950 PF00076//PF01535//PF13041//PF14432 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) D10 - View
Gossypium hirsutum Gohir.A10G197850 PF00076//PF01535//PF13041//PF14432 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) A10 - View
Glycine max Glyma.19G189200 PF13041 - PPR repeat family (PPR_2) Gm19 + View
Gossypium raimondii Gorai.011G229900 Chr11 - View
Helianthus annuus HanXRQChr12g0368281 Probable pentatricopeptide repeat (PPR) superfamily protein HanXRQChr12 + View
Lupinus albus Lalb_Chr19g0129651 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Lalb_Chr19 + View
Malus domestica MD02G1251400 Pentatricopeptide repeat (PPR) superfamily protein Chr02 - View
Manihot esculenta Manes.10G056900 Chromosome10 - View
Nelumbo nucifera Nn2g13998 chr2 + View
Nelumbo nucifera Nn6g35060 chr6 + View
Punica granatum PGR142G4282 NC_045128.1 + View
Papaver somniferum PSO063G0191 NC_039364.1 - View
Papaver somniferum PSO384G1726 NC_039368.1 + View
Papaver somniferum PSO384G0513 NC_039368.1 + View
Phaseolus vulgaris Phvul.007G225800 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr07 + View
Quercus lobata QL08p052645 8 + View
Rhododendron simsii Rhsim03G0106000 chr03 + View
Striga asiatica SGA_v2.0_scaffold13G06433 scaffold13 - View
Sequoiadendron giganteum SEGI_40206 chr8 - View
Solanum lycopersicum Solyc05g055230.2 40S ribosomal protein S17 (AHRD V3.3 *** A0A2G2WU93_CAPBA) SL4.0ch05 - View
Solanum pennellii Sopen11g026640 Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch11 - View
Solanum tuberosum PGSC0003DMG400045090 Pentatricopeptide repeat-containing protein ST4.03ch11 - View
Theobroma cacao Thecc.10G102100 Pentatricopeptide repeat-containing protein Chromosome_10 + View
Vaccinium macrocarpon vmacro10286 Similar to PCMP-H13: Pentatricopeptide repeat-containing protein At4g14050, mitochondrial (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01034707001 chr13 + View