Gene: AT5G03800

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G03800
  • Transcript Identifier AT5G03800.1
  • Gene Type Coding gene
  • Location Chr5 : 1010894-1013584 : negative

Gene Family Information

  • ID HOM05D000001
  • #Genes/#Species 35287/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G03800.1
  • symbol EMB175
  • Alias EMB166,EMBRYO DEFECTIVE 166,EMB1899,embryo defective 1899
  • full_name EMBRYO DEFECTIVE 175
  • uniprot Q9FFN1

Descriptions

  • Description Pentatricopeptide repeat (PPR) superfamily protein
  • Computational description EMBRYO DEFECTIVE 175 (EMB175); FUNCTIONS IN: catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, membrane; EXPRESSED IN: root, flower, leaf; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G49170.1); Has 41516 Blast hits to 13216 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 21; Plants - 41054; Viruses - 0; Other Eukaryotes - 417 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009793
IMP
NAS
Gene Ontologyembryo development ending in seed dormancy1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISM
Gene Ontologychloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002885 Pentatricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR032867 DYW domain
Mapman id Description
35.1 not assigned.annotated