Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G15850 LG-5 - View
Acer truncatum Atru.chr2.69 chr2 + View
Actinidia chinensis Actinidia19778 Lachesis_group7 - View
Actinidia chinensis Actinidia21497 Lachesis_group16 + View
Actinidia chinensis Actinidia21068 Lachesis_group9 + View
Actinidia chinensis Actinidia16815 Lachesis_group12 - View
Actinidia chinensis Actinidia35559 Lachesis_group2 - View
Arabidopsis lyrata AL3G16140 scaffold_3 + View
Amaranthus hybridus Ah.06g189820 AmaHy_arrow1_Scaffold_6 + View
Aquilegia oxysepala Aqoxy5G00746 CHR05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ECLV29 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) arahy.Tifrunner.gnm1.Arahy.16 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ZM6EKQ K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) arahy.Tifrunner.gnm1.Arahy.19 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.Q1UW6Y K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) arahy.Tifrunner.gnm1.Arahy.09 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.4BL4Y4 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) arahy.Tifrunner.gnm1.Arahy.06 + View
Arabidopsis thaliana AT3G05530 regulatory particle triple-A ATPase 5A Encodes RPT5a (Regulatory Particle 5a)%2C one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis%2C the RPT5 subunit is encoded by two highly homologous genes%2C RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50%25 pollen lethality%2C indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession%2C a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte%2C whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype. regulatory particle triple-A ATPase 5A (RPT5A)%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA-type%2C conserved site (InterPro:IPR003960)%2C 26S proteasome subunit P45 (InterPro:IPR005937)%3B BEST Arabidopsis thaliana protein match is: 26S proteasome AAA-ATPase subunit RPT5B (TAIR:AT1G09100.1)%3B Has 33265 Blast hits to 30927 proteins in 3145 species: Archae - 1437%3B Bacteria - 12044%3B Metazoa - 4947%3B Fungi - 3672%3B Plants - 3322%3B Viruses - 56%3B Other Eukaryotes - 7787 (source: NCBI BLink). Chr3 + View
Amborella trichopoda ATR0796G134 AmTr_v1.0_scaffold00045 - View
Brassica carinata BcaB04g19259 ChrB04 - View
Brassica carinata BcaB04g21440 ChrB04 + View
Brassica carinata BcaC05g30113 ChrC05 - View
Brassica napus C05p61680 C05 - View
Brassica napus A03p34180 A03 + View
Brassica napus C03p41570 C03 + View
Brassica napus BNapus_Darmor_BZH_scaffold_114p00010 BNapus_Darmor_BZH_scaffold_114 - View
Brassica oleracea BolC3t16438H C3 + View
Brassica oleracea BolC5t34828H C5 - View
Brassica rapa BraSC132t45499Z Brapa_scaffold_132 - View
Brassica rapa BraA03t12592Z A03 + View
Beta vulgaris EL10Ac4g09910 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) Chr4_EL10_PGA_scaffold1 - View
Capsicum annuum CAN.G1459.15 PGAv.1.6.scaffold1459 + View
Cicer arietinum L. Ca_10129_v3 Ca_LG4_v3 + View
Corylus avellana Haze_04136 Similar to RPT5A: 26S proteasome regulatory subunit 6A homolog A (Arabidopsis thaliana OX%3D3702) 2 - View
Coffea canephora Cc02_g34180 26S protease regulatory subunit 6A homolog A chr2 + View
Citrus clementina Ciclev10001272m.g scaffold_5 + View
Carpinus fangiana Cfa006632 Cfa02 + View
Cardamine hirsuta CARHR079920 26S protease regulatory subunit 6A-like protein Chr3 + View
Carya illinoinensis CiPaw.08G161700 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) Chr08 + View
Carya illinoinensis CiPaw.07G021800 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) Chr07 + View
Citrullus lanatus ClCG03G017280 26S protease regulatory subunit 6a, putative CG_Chr03 + View
Citrullus lanatus ClCG02G015290 26S protease regulatory subunit 6A-like protein CG_Chr02 + View
Corchorus olitorius COL.COLO4_10524 hypothetical protein AWUE01014526.1 + View
Carica papaya Cpa.g.sc9.267 supercontig_9 - View
Carica papaya Cpa.g.sc327.2 supercontig_327 + View
Chenopodium quinoa AUR62000758 TBP1: 26S protease regulatory subunit 6A homolog C_Quinoa_Scaffold_2088 - View
Chenopodium quinoa AUR62005210 RPT5A: 26S protease regulatory subunit 6A homolog A C_Quinoa_Scaffold_3820 + View
Capsella rubella Carub.0003s0482 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) scaffold_3 + View
Cucumis sativus L. CsaV3_2G006720 26S proteasome regulatory subunit 6A homolog chr2 - View
Daucus carota DCAR_003358 hypothetical protein DCARv2_Chr1 + View
Davidia involucrata Dinv30813 GWHABJS00000002 + View
Davidia involucrata Dinv40336 GWHABJS00000005 + View
Durio zibethinus Duzib128G1473 NW_019168481.1 - View
Durio zibethinus Duzib177G0021 NW_019168004.1 + View
Durio zibethinus Duzib106G0991 NW_019168492.1 - View
Erigeron canadensis ECA236G1221 Conyza_canadensis_scaffold:3 + View
Eutrema salsugineum Thhalv10020798m.g K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) scaffold_13 - View
Fragaria x ananassa FAN02G1474 PTHR23073:SF7 - 26S PROTEASE REGULATORY SUBUNIT 6A Fvb6-4 + View
Fragaria x ananassa FAN14G1978 PTHR23073:SF7 - 26S PROTEASE REGULATORY SUBUNIT 6A Fvb6-1 - View
Fragaria x ananassa FAN09G3411 PTHR23073:SF7 - 26S PROTEASE REGULATORY SUBUNIT 6A Fvb6-2 - View
Fragaria x ananassa FAN05G5158 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) Fvb6-3 - View
Fragaria vesca FvH4_6g06600 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) Fvb6 + View
Gossypium hirsutum Gohir.A13G109500 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) A13 + View
Gossypium hirsutum Gohir.D13G112200 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) D13 + View
Gossypium hirsutum Gohir.D11G309200 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) D11 - View
Gossypium hirsutum Gohir.A11G294500 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) A11 + View
Glycine max Glyma.10G151900 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) Gm10 - View
Glycine max Glyma.19G232901 PTHR23073//PTHR23073:SF7 - 26S PROTEASE REGULATORY SUBUNIT // 26S PROTEASE REGULATORY SUBUNIT 6A Gm19 - View
Glycine max Glyma.20G236500 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) Gm20 + View
Gossypium raimondii Gorai.007G341200 Chr07 - View
Gossypium raimondii Gorai.013G125900 Chr13 + View
Hydrangea macrophylla Hma1.2p1_0472F.1_g159590 Hma1.2p1_0472F.1 + View
Hydrangea macrophylla Hma1.2p1_1292F.1_g273810 Hma1.2p1_1292F.1 + View
Lupinus albus Lalb_Chr18g0045781 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) Lalb_Chr18 + View
Lupinus albus Lalb_Chr21g0310591 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) Lalb_Chr21 - View
Lotus japonicus Lj1g0008543 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) chr1 + View
Lonicera japonica Lj9C146G6 GWHAAZE00000009 + View
Lactuca sativa Lsat_1_v5_gn_7_72081 Lsat_1_v8_lg_7 - View
Malus domestica MD12G1212500 regulatory particle triple-A ATPase 5A Chr12 - View
Malus domestica MD04G1199700 regulatory particle triple-A ATPase 5A Chr04 - View
Manihot esculenta Manes.09G170700 Chromosome09 + View
Manihot esculenta Manes.08G117200 Chromosome08 - View
Medicago truncatula Medtr1g083330 26S proteasome regulatory particle triple-A ATPase protein chr1 + View
Nicotiana tabacum Nitab4.5_0003658g0060 ATPase, AAA-type, core, P-loop containing nucleoside triphosphate hydrolase, ATPase, AAA-type, conserved site, 26S proteasome subunit P45, AAA+ ATPase domain Nitab4.5_0003658 + View
Olea europaea Oeu017261.1 chr15 + View
Olea europaea Oeu043343.1 chr3 + View
Olea europaea Oeu012120.2 chr13 + View
Petunia axillaris Peaxi162Scf00037g01219 26S protease regulatory subunit 6A homolog Peaxi162Scf00037 + View
Petunia axillaris Peaxi162Scf00071g00535 26S protease regulatory subunit 6A homolog Peaxi162Scf00071 - View
Punica granatum PGR031G2362 NC_045127.1 - View
Prunus persica Prupe.6G320300 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) Pp06 - View
Papaver somniferum PSO832G3424 NC_039367.1 + View
Papaver somniferum PSO210G3177 NC_039359.1 - View
Populus trichocarpa Potri.013G016800 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) Chr13 - View
Populus trichocarpa Potri.005G025100 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) Chr05 - View
Phaseolus vulgaris Phvul.007G197100 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) Chr07 + View
Quercus lobata QL03p020155 3 - View
Rosa chinensis RcHm_v2.0_Chr3g0455801 RcHm_v2.0_Chr3 + View
Salix brachista Sabra05G0030700 GWHAAZH00000005 - View
Salix brachista Sabra13G0014700 GWHAAZH00000013 - View
Salix brachista Sabra13G0019400 GWHAAZH00000013 - View
Sechium edule Sed0007718 LG03 - View
Solanum lycopersicum Solyc01g099760.3 LeMA-1 putatve Mg-dependent ATPase 1 SL4.0ch01 + View
Schrenkiella parvula Sp3g04370 K03065 - 26S proteasome regulatory subunit T5 (PSMC3, RPT5) ch3-1 + View
Solanum pennellii Sopen01g043280 Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype. | regulatory particle triple-A ATPase 5A (RPT5A) | CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core , ATPase, AAA-type, core , ATPase, AAA-type, conserved site , 26S proteasome subunit P45 | BEST Arabidopsis thaliana protein match is: 26S proteasome AAA-ATPase subunit RPT5B Spenn-ch01 + View
Solanum tuberosum PGSC0003DMG400024715 26S protease regulatory subunit 6A homolog ST4.03ch01 + View
Selenicereus undatus Hund21712 Scaffold_33680 + View
Trochodendron aralioides TAR362G0872 group17 - View
Theobroma cacao Thecc.05G313300 Regulatory particle triple-A ATPase 5A Chromosome_5 + View
Tripterygium wilfordii TWI56G0225 NC_052242.1 - View
Tripterygium wilfordii TWI12G1234 NC_052243.1 + View
Vaccinium macrocarpon vmacro19744 Similar to RPT5A: 26S proteasome regulatory subunit 6A homolog A (Arabidopsis thaliana OX%3D3702) chr5_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0720G0242 CM024071.1 - View
Vitis vinifera GSVIVG01031137001 chr14 + View