Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0040607 small nuclear ribonucleoprotein D2 [Populus trichocarpa] Chr11 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G28980 LG-1 + View
Acer truncatum Atru.chr5.1147 chr5 + View
Actinidia chinensis Actinidia24823 Lachesis_group15 - View
Arabidopsis lyrata AL4G47220 scaffold_4 + View
Avicennia marina MSTRG.18149 ScioBoG_22153_HRSCAF_22259 + View
Avicennia marina MSTRG.21635 ScioBoG_26769_HRSCAF_26899 - View
Amaranthus hybridus Ah.15g093180 Probable small nuclear ribonucleoprotein Sm D2 (Sm-D2) (snRNP core protein D2) AmaHy_arrow1_Scaffold_15 + View
Aquilegia oxysepala Aqoxy5G00757 CHR05 - View
Arabidopsis thaliana AT2G47640 Small nuclear ribonucleoprotein family protein Small nuclear ribonucleoprotein family protein%3B FUNCTIONS IN: molecular_function unknown%3B LOCATED IN: nucleolus%2C nucleus%2C small nucleolar ribonucleoprotein complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G62840.1)%3B Has 791 Blast hits to 791 proteins in 229 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 328%3B Fungi - 181%3B Plants - 143%3B Viruses - 0%3B Other Eukaryotes - 137 (source: NCBI BLink). Small nuclear ribonucleoprotein family protein%3B FUNCTIONS IN: molecular_function unknown%3B LOCATED IN: nucleolus%2C nucleus%2C small nucleolar ribonucleoprotein complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G62840.2)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr2 + View
Amborella trichopoda ATR0706G006 AmTr_v1.0_scaffold00057 + View
Brassica rapa BraA04t15770Z A04 + View
Beta vulgaris EL10Ac7g17470 K11096 - small nuclear ribonucleoprotein D2 (SNRPD2, SMD2) Chr7_EL10_PGA_scaffold5 - View
Capsicum annuum CAN.G472.4 PGAv.1.6.scaffold472 - View
Coffea canephora Cc01_g20840 Probable small nuclear ribonucleoprotein Sm D2 chr1 - View
Citrus clementina Ciclev10022968m.g scaffold_3 - View
Ceratophyllum demersum CDE08G0313 6 - View
Cardamine hirsuta CARHR143040 Small nuclear ribonucleoprotein family protein Chr4 + View
Carya illinoinensis CiPaw.08G095300 K11096 - small nuclear ribonucleoprotein D2 (SNRPD2, SMD2) Chr08 + View
Carica papaya Cpa.g.sc9.261 supercontig_9 + View
Chenopodium quinoa AUR62008622 SmD2: Probable small nuclear ribonucleoprotein Sm D2 C_Quinoa_Scaffold_1710 + View
Chenopodium quinoa AUR62008674 SmD2: Probable small nuclear ribonucleoprotein Sm D2 C_Quinoa_Scaffold_1710 - View
Chenopodium quinoa AUR62033149 snrpd2: Probable small nuclear ribonucleoprotein Sm D2 C_Quinoa_Scaffold_2244 - View
Chenopodium quinoa AUR62025572 SmD2: Probable small nuclear ribonucleoprotein Sm D2 C_Quinoa_Scaffold_2773 + View
Capsella rubella Carub.0004s3037 K11096 - small nuclear ribonucleoprotein D2 (SNRPD2, SMD2) scaffold_4 + View
Daucus carota DCAR_005793 hypothetical protein DCARv2_Chr2 + View
Durio zibethinus Duzib133G0506 NW_019167938.1 + View
Erigeron canadensis ECA236G0463 Conyza_canadensis_scaffold:3 + View
Erigeron canadensis ECA247G2756 Conyza_canadensis_scaffold:7 + View
Eucalyptus grandis Eucgr.H01111 Chr08 + View
Erythranthe guttata Migut.D00220 scaffold_4 - View
Eutrema salsugineum Thhalv10005934m.g PTHR14379 - LIMKAIN B LKAP scaffold_19 + View
Eutrema salsugineum Thhalv10001688m.g scaffold_22 + View
Helianthus annuus HanXRQChr06g0163781 Putative LSM domain; Small nuclear ribonucleoprotein Sm D2 HanXRQChr06 - View
Hydrangea macrophylla Hma1.2p1_1471F.1_g285650 Hma1.2p1_1471F.1 + View
Hydrangea macrophylla Hma1.2p1_0494F.1_g165180 Hma1.2p1_0494F.1 - View
Magnolia biondii MBI19_g25358_MAGBIO AED:0.26 Chr19 + View
Nelumbo nucifera Nn4g25788 chr4 + View
Nelumbo nucifera Nn3g21491 chr3 - View
Nicotiana tabacum Nitab4.5_0001879g0090 Like-Sm (LSM) domain, Small nuclear ribonucleoprotein Sm D2, Ribonucleoprotein LSM domain, Ribonucleoprotein LSM domain, eukaryotic/archaea-type Nitab4.5_0001879 - View
Olea europaea Oeu046678.1 chr16 + View
Petunia axillaris Peaxi162Scf00001g00434 Small nuclear ribonucleoprotein family protein Peaxi162Scf00001 + View
Petunia axillaris Peaxi162Scf00399g00073 Unknown protein Peaxi162Scf00399 + View
Papaver somniferum PSO407G0057 NW_020651082.1 + View
Populus trichocarpa Potri.002G204300 K11096 - small nuclear ribonucleoprotein D2 (SNRPD2, SMD2) Chr02 + View
Populus trichocarpa Potri.014G129100 K11096 - small nuclear ribonucleoprotein D2 (SNRPD2, SMD2) Chr14 + View
Quercus lobata QL12p028476 12 + View
Rhododendron simsii Rhsim01G0285100 chr01 - View
Rhododendron simsii Rhsim13G0010100 chr13 + View
Striga asiatica SGA_v2.0_scaffold1G00364 scaffold1 + View
Striga asiatica SGA_v2.0_scaffold198G41149 scaffold198 + View
Salvia bowleyana SalBow3G4558 GWHASIU00000006 - View
Salix brachista Sabra02G0154900 GWHAAZH00000002 - View
Salix brachista Sabra14G0095900 GWHAAZH00000014 + View
Solanum lycopersicum Solyc09g075130.3 Small nuclear ribonucleoprotein Sm D2 (AHRD V3.3 *** A0A2I4HQA6_9ROSI) SL4.0ch09 - View
Schrenkiella parvula Sp4g29580 K11096 - small nuclear ribonucleoprotein D2 (SNRPD2, SMD2) ch4-6 + View
Solanum pennellii Sopen09g029950 Small nuclear ribonucleoprotein family protein | CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain , Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type , Like-Sm ribonucleoprotein (LSM)-related domain | BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein Spenn-ch09 - View
Solanum tuberosum PGSC0003DMG400011403 Small nuclear ribonucleoprotein ST4.03ch09 - View
Selenicereus undatus Hund18161 Scaffold_33675 - View
Selenicereus undatus Hund05428 Scaffold_19641 - View
Trochodendron aralioides TAR633G0971 group2 - View
Trochodendron aralioides TAR362G1299 group17 + View
Trochodendron aralioides TAR365G0771 group16 + View
Tarenaya hassleriana THA.LOC104802174 small nuclear ribonucleoprotein Sm D2-like isoform X1 NW_010970490.1 - View
Tarenaya hassleriana THA.LOC104817495 small nuclear ribonucleoprotein Sm D2-like NW_010965946.1 + View
Tripterygium wilfordii TWI14G1361 NC_052249.1 + View
Tripterygium wilfordii TWI23G0966 NC_052239.1 + View
Tripterygium wilfordii TWI59G1425 NC_052248.1 + View
Utricularia gibba unitig_8.g3705 unitig_8 + View
Utricularia gibba unitig_22.g5240 unitig_22 + View
Utricularia gibba unitig_26.g10172 unitig_26 - View
Vaccinium macrocarpon vmacro15012 Similar to snr-4: Probable small nuclear ribonucleoprotein Sm D2 (Caenorhabditis elegans OX%3D6239) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro02450 Similar to SmD2: Probable small nuclear ribonucleoprotein Sm D2 (Drosophila melanogaster OX%3D7227) chr9_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01028015001 chr7 - View