Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0026754 PREDICTED: la-related protein 6C isoform X1 [Vitis vinifera] Chr3 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G5890 LG-8 + View
Acer truncatum Atru.chr5.2815 chr5 + View
Actinidia chinensis Actinidia00464 Lachesis_group12 + View
Arabidopsis lyrata AL3G32460 scaffold_3 + View
Avicennia marina MSTRG.27718 ScioBoG_94932_HRSCAF_95134 + View
Amaranthus hybridus Ah.01g020070 La-related protein 6C (AtLARP6c) AmaHy_arrow1_Scaffold_1 + View
Aquilegia oxysepala Aqoxy6G00881 CHR06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.LS1V0P PTHR22792//PTHR22792:SF62 - LUPUS LA PROTEIN-RELATED // LA-RELATED PROTEIN 6C arahy.Tifrunner.gnm1.Arahy.10 + View
Arabidopsis thaliana AT3G19090 RNA-binding protein RNA-binding protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: RNA processing%3B LOCATED IN: ribonucleoprotein complex%2C nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C RNA-binding protein Lupus La (InterPro:IPR006630)%2C Lupus La protein (InterPro:IPR002344)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C Ataxin-2%2C C-terminal (InterPro:IPR009818)%3B BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT2G43970.1)%3B Has 912 Blast hits to 912 proteins in 142 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 538%3B Fungi - 65%3B Plants - 233%3B Viruses - 0%3B Other Eukaryotes - 74 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaB04g19023 ChrB04 + View
Brassica carinata BcaB06g25965 ChrB06 + View
Brassica carinata BcaC01g03651 ChrC01 - View
Brassica napus A05p30500 A05 - View
Brassica napus C05p46130 C05 - View
Brassica napus C03p50100 C03 + View
Brassica napus A03p41030 A03 + View
Brassica oleracea BolC1t04463H C1 - View
Brassica oleracea BolC3t17303H C3 + View
Brassica rapa BraA05t21890Z A05 - View
Brassica rapa BraA03t13260Z A03 + View
Beta vulgaris EL10Ac9g21821 PTHR22792:SF62 - LA-RELATED PROTEIN 6C Chr9_EL10_PGA_scaffold8 + View
Capsicum annuum CAN.G322.34 PGAv.1.6.scaffold322 - View
Cannabis sativa CANSAT25G1323 NC_044370.1 - View
Cicer arietinum L. Ca_18660_v3 Ca_LG6_v3 + View
Coffea canephora Cc02_g18470 Putative RNA-binding protein chr2 + View
Citrus clementina Ciclev10028506m.g scaffold_8 - View
Carpinus fangiana Cfa005428 Cfa02 - View
Cardamine hirsuta CARHR094520 RNA-binding protein Chr3 + View
Carya illinoinensis CiPaw.05G055100 K15191 - La-related protein 7 (LARP7) Chr05 - View
Carya illinoinensis CiPaw.06G141200 PTHR22792:SF62 - LA-RELATED PROTEIN 6C Chr06 + View
Citrullus lanatus ClCG09G017530 RNA-binding protein CG_Chr09 - View
Cucumis melo MELO3C021915.2 la-related protein 6C chr11 + View
Carica papaya Cpa.g.sc62.47 supercontig_62 - View
Chenopodium quinoa AUR62011427 LARP6C: La-related protein 6C C_Quinoa_Scaffold_3333 + View
Chenopodium quinoa AUR62016633 LARP6C: La-related protein 6C C_Quinoa_Scaffold_3670 - View
Capsella rubella Carub.0003s1894 PTHR22792//PTHR22792:SF62 - LUPUS LA PROTEIN-RELATED // LA-RELATED PROTEIN 6C scaffold_3 + View
Cucumis sativus L. CsaV3_2G014170 la-related protein 6C chr2 - View
Davidia involucrata Dinv23592 GWHABJS00000005 - View
Davidia involucrata Dinv42124 GWHABJS00000002 - View
Durio zibethinus Duzib248G1262 NW_019168048.1 - View
Durio zibethinus Duzib132G0441 NW_019167915.1 + View
Erigeron canadensis ECA234G3855 Conyza_canadensis_scaffold:4 + View
Eucalyptus grandis Eucgr.G01502 Chr07 - View
Erythranthe guttata Migut.N01204 scaffold_14 - View
Eutrema salsugineum Thhalv10020682m.g PTHR22792:SF62 - LA-RELATED PROTEIN 6C scaffold_13 - View
Fragaria x ananassa FAN27G3229 K15191 - La-related protein 7 (LARP7) Fvb2-1 - View
Fragaria x ananassa FAN20G2139 K15191 - La-related protein 7 (LARP7) Fvb2-3 + View
Fragaria x ananassa FAN15G2259 K15191 - La-related protein 7 (LARP7) Fvb2-4 - View
Fragaria x ananassa FAN24G3311 K15191 - La-related protein 7 (LARP7) Fvb2-2 + View
Fragaria vesca FvH4_2g06870 PTHR22792:SF62 - LA-RELATED PROTEIN 6C Fvb2 - View
Gossypium hirsutum Gohir.A01G005950 PTHR22792//PTHR22792:SF62 - LUPUS LA PROTEIN-RELATED // LA-RELATED PROTEIN 6C A01 + View
Gossypium hirsutum Gohir.A12G026300 PF00076//PF05383//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // La domain (La) // Ataxin-2 C-terminal region (PAM2) A12 - View
Gossypium hirsutum Gohir.D02G212100 K15191 - La-related protein 7 (LARP7) D02 + View
Gossypium hirsutum Gohir.A03G191100 K15191 - La-related protein 7 (LARP7) A03 + View
Gossypium hirsutum Gohir.A13G037700 PF00076//PF05383//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // La domain (La) // Ataxin-2 C-terminal region (PAM2) A13 + View
Gossypium hirsutum Gohir.D12G025900 PF00076//PF05383//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // La domain (La) // Ataxin-2 C-terminal region (PAM2) D12 - View
Gossypium hirsutum Gohir.D13G036000 K15191 - La-related protein 7 (LARP7) D13 + View
Glycine max Glyma.07G209600 PTHR22792//PTHR22792:SF62 - LUPUS LA PROTEIN-RELATED // LA-RELATED PROTEIN 6C Gm07 + View
Glycine max Glyma.02G135300 PTHR22792//PTHR22792:SF62 - LUPUS LA PROTEIN-RELATED // LA-RELATED PROTEIN 6C Gm02 - View
Gossypium raimondii Gorai.008G026200 Chr08 - View
Gossypium raimondii Gorai.013G040700 Chr13 + View
Gossypium raimondii Gorai.005G240000 Chr05 + View
Helianthus annuus HanXRQChr03g0072191 Probable RNA-binding protein HanXRQChr03 + View
Lupinus albus Lalb_Chr05g0218991 PTHR22792//PTHR22792:SF62 - LUPUS LA PROTEIN-RELATED // LA-RELATED PROTEIN 6C Lalb_Chr05 + View
Lupinus albus Lalb_Chr16g0384541 PTHR22792:SF62 - LA-RELATED PROTEIN 6C Lalb_Chr16 + View
Lotus japonicus Lj4g0016508 PTHR22792//PTHR22792:SF62 - LUPUS LA PROTEIN-RELATED // LA-RELATED PROTEIN 6C chr4 - View
Lonicera japonica Lj5C206G13 GWHAAZE00000005 - View
Lonicera japonica Lj9A360T78 GWHAAZE00000009 - View
Lactuca sativa Lsat_1_v5_gn_9_110320 K15191 - La-related protein 7 (LARP7) Lsat_1_v8_lg_9 + View
Lactuca sativa Lsat_1_v5_gn_5_117721 K15191 - La-related protein 7 (LARP7) Lsat_1_v8_lg_5 + View
Malus domestica MD10G1089400 RNA-binding protein Chr10 + View
Malus domestica MD05G1074900 RNA-binding protein Chr05 + View
Manihot esculenta Manes.15G143400 Chromosome15 - View
Manihot esculenta Manes.17G094400 Chromosome17 - View
Medicago truncatula Medtr4g086860 LA-related protein 6 LA RNA-binding domain protein chr4 - View
Nicotiana tabacum Nitab4.5_0002462g0070 RNA recognition motif domain, Nucleotide-binding, alpha-beta plait, Winged helix-turn-helix DNA-binding domain, Ataxin-2, C-terminal, RNA-binding protein Lupus La Nitab4.5_0002462 - View
Nicotiana tabacum Nitab4.5_0002673g0010 RNA-binding protein Lupus La, Winged helix-turn-helix DNA-binding domain, Ataxin-2, C-terminal Nitab4.5_0002673 + View
Olea europaea Oeu007252.1 chr3 - View
Olea europaea Oeu013677.1 chr15 + View
Petunia axillaris Peaxi162Scf00016g01527 RNA-binding protein Peaxi162Scf00016 + View
Punica granatum PGR042G2114 NC_045130.1 + View
Prunus persica Prupe.8G116300 PTHR22792:SF62 - LA-RELATED PROTEIN 6C Pp08 + View
Pisum sativum Psat7g124040 La domain chr7LG7 - View
Populus trichocarpa Potri.009G106500 PTHR22792//PTHR22792:SF62 - LUPUS LA PROTEIN-RELATED // LA-RELATED PROTEIN 6C Chr09 - View
Populus trichocarpa Potri.004G144700 PTHR22792//PTHR22792:SF62 - LUPUS LA PROTEIN-RELATED // LA-RELATED PROTEIN 6C Chr04 - View
Phaseolus vulgaris Phvul.003G293900 PTHR22792:SF62 - LA-RELATED PROTEIN 6C Chr03 + View
Quercus lobata QL11p038354 11 - View
Rosa chinensis RcHm_v2.0_Chr6g0259181 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim11G0169100 chr11 - View
Striga asiatica SGA_v2.0_scaffold55G19840 scaffold55 + View
Striga asiatica SGA_v2.0_scaffold13G06571 scaffold13 + View
Salvia bowleyana SalBow3G4198 GWHASIU00000006 + View
Salix brachista Sabra04G0096000 GWHAAZH00000004 - View
Salix brachista Sabra09G0081300 GWHAAZH00000009 - View
Simmondsia chinensis Sc08g0000130 GWHAASQ00000008 - View
Sechium edule Sed0011344 LG05 + View
Sechium edule Sed0023862 LG01 + View
Solanum lycopersicum Solyc01g108310.4 La-related protein like (AHRD V3.3 *** A0A2R6RH75_ACTCH) SL4.0ch01 + View
Schrenkiella parvula Sp3g17170 PTHR22792:SF62 - LA-RELATED PROTEIN 6C ch3-1 + View
Solanum pennellii Sopen01g050530 RNA-binding protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: RNA processing | LOCATED IN: ribonucleoprotein complex, nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding , RNA-binding protein Lupus La , Lupus La protein , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Ataxin-2, C-terminal | BEST Arabidopsis thaliana protein match is: RNA-binding protein Spenn-ch01 + View
Solanum pennellii Sopen10g022240 RNA-binding protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: RNA processing | LOCATED IN: ribonucleoprotein complex, nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding , RNA-binding protein Lupus La , Lupus La protein , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Ataxin-2, C-terminal | BEST Arabidopsis thaliana protein match is: RNA-binding protein Spenn-ch10 - View
Solanum tuberosum PGSC0003DMG400025802 Lupus la ribonucleoprotein ST4.03ch01 + View
Selenicereus undatus Hund00320 Scaffold_33678 + View
Trochodendron aralioides TAR376G1022 group14 - View
Trochodendron aralioides TAR628G0671 group5 - View
Theobroma cacao Thecc.02G095800 RNA-binding protein Chromosome_2 + View
Trifolium pratense TPR.G16251 Tp57577_TGAC_v2_LG4 - View
Tripterygium wilfordii TWI75G0696 NC_052253.1 + View
Vaccinium macrocarpon vmacro02175 Similar to LARP6C: La-related protein 6C (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01031802001 chr3 - View