Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0035209 hypothetical protein CICLE_v10016241mg [Citrus clementina] Chr6 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr6.2446 chr6 - View
Actinidia chinensis Actinidia01365 Lachesis_group10 + View
Actinidia chinensis Actinidia37452 Lachesis_group16 + View
Arabidopsis lyrata AL5G16840 scaffold_5 + View
Avicennia marina MSTRG.7950 ScioBoG_102841_HRSCAF_103114 + View
Avicennia marina MSTRG.551 ScioBoG_102831_HRSCAF_103044 + View
Amaranthus hybridus Ah.03g133470 AmaHy_arrow1_Scaffold_3 - View
Arabidopsis thaliana AT3G27430 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein Encodes 20S proteasome beta subunit PBB1 (PBB1). PBB1%3B FUNCTIONS IN: peptidase activity%2C endopeptidase activity%2C threonine-type endopeptidase activity%3B INVOLVED IN: ubiquitin-dependent protein catabolic process%3B LOCATED IN: proteasome core complex%2C proteasome complex%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Proteasome%2C beta-type subunit%2C conserved site (InterPro:IPR016050)%2C Peptidase T1A%2C proteasome beta-subunit (InterPro:IPR000243)%2C Proteasome%2C subunit alpha/beta (InterPro:IPR001353)%3B BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit PBB2 (TAIR:AT5G40580.2)%3B Has 6188 Blast hits to 6187 proteins in 589 species: Archae - 869%3B Bacteria - 478%3B Metazoa - 2028%3B Fungi - 1271%3B Plants - 666%3B Viruses - 0%3B Other Eukaryotes - 876 (source: NCBI BLink). PBB1%3B FUNCTIONS IN: peptidase activity%2C endopeptidase activity%2C threonine-type endopeptidase activity%3B INVOLVED IN: ubiquitin-dependent protein catabolic process%3B LOCATED IN: proteasome core complex%2C proteasome complex%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Proteasome%2C beta-type subunit%2C conserved site (InterPro:IPR016050)%2C Peptidase T1A%2C proteasome beta-subunit (InterPro:IPR000243)%2C Proteasome%2C subunit alpha/beta (InterPro:IPR001353)%3B BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit PBB2 (TAIR:AT5G40580.2)%3B Has 6205 Blast hits to 6204 proteins in 593 species: Archae - 869%3B Bacteria - 486%3B Metazoa - 2030%3B Fungi - 1274%3B Plants - 670%3B Viruses - 0%3B Other Eukaryotes - 876 (source: NCBI BLink). Chr3 + View
Brassica napus A02p35480 A02 + View
Brassica rapa BraA02t08549Z A02 + View
Beta vulgaris EL10As2g23169 PTHR11599//PTHR11599:SF44 - PROTEASOME SUBUNIT ALPHA/BETA // AT05866P-RELATED Scaffold_0002 - View
Capsicum annuum CAN.G43.20 PGAv.1.6.scaffold43 - View
Cannabis sativa CANSAT64G1844 NC_044379.1 + View
Corylus avellana Haze_14771 Similar to PBB2: Proteasome subunit beta type-7-B (Arabidopsis thaliana OX%3D3702) 5 - View
Coffea canephora Cc11_g16060 Proteasome subunit beta type-7-B chr11 - View
Citrus clementina Ciclev10032380m.g scaffold_4 + View
Carpinus fangiana Cfa007326 Cfa03 + View
Carpinus fangiana Cfa009247 Cfa03 - View
Cardamine hirsuta CARHR148800 Proteasome subunit beta type Chr5 + View
Carya illinoinensis CiPaw.05G178600 K02739 - 20S proteasome subunit beta 2 (PSMB7) Chr05 - View
Carya illinoinensis CiPaw.03G046900 KOG0173 - 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 Chr03 - View
Corchorus olitorius COL.COLO4_23501 Peptidase T1A%2C proteasome beta-subunit AWUE01018253.1 - View
Chenopodium quinoa AUR62024227 PBB1: Proteasome subunit beta type-7-A C_Quinoa_Scaffold_4119 + View
Chenopodium quinoa AUR62005515 PBB1: Proteasome subunit beta type-7-A C_Quinoa_Scaffold_1214 - View
Capsella rubella Carub.0005s0583 scaffold_5 + View
Daucus carota DCAR_026496 hypothetical protein DCARv2_Chr8 - View
Davidia involucrata Dinv14746 GWHABJS00000018 + View
Durio zibethinus Duzib147G0622 NW_019168470.1 - View
Erigeron canadensis ECA246G0399 Conyza_canadensis_scaffold:8 + View
Eucalyptus grandis Eucgr.J02263 Chr10 - View
Eucalyptus grandis Eucgr.I01719 Chr09 + View
Erythranthe guttata Migut.K00628 scaffold_11 - View
Fragaria x ananassa FAN02G0316 K02739 - 20S proteasome subunit beta 2 (PSMB7) Fvb6-4 - View
Gossypium hirsutum Gohir.D04G059100 K02739 - 20S proteasome subunit beta 2 (PSMB7) D04 - View
Gossypium hirsutum Gohir.A05G354000 PTHR11599:SF44 - AT05866P-RELATED A05 + View
Lonicera japonica Lj3C1061T14 GWHAAZE00000003 - View
Lonicera japonica Lj6A815G36 GWHAAZE00000006 + View
Lactuca sativa Lsat_1_v5_gn_3_30120 Lsat_1_v8_lg_3 - View
Malus domestica MD09G1020800 20S proteasome beta subunit PBB2 Chr09 + View
Manihot esculenta Manes.15G152900 Chromosome15 - View
Manihot esculenta Manes.17G110000 Chromosome17 + View
Medicago truncatula Medtr7g032930 proteasome subunit beta type-7-A protein chr7 - View
Nelumbo nucifera Nn4g22543 chr4 + View
Nelumbo nucifera Nn3g16653 chr3 + View
Olea europaea Oeu059779.1 chr1 + View
Petunia axillaris Peaxi162Scf00128g00538 Proteasome subunit beta type-7-A Peaxi162Scf00128 - View
Punica granatum PGR142G0956 NC_045128.1 - View
Prunus persica Prupe.3G295500 K02739 - 20S proteasome subunit beta 2 (PSMB7) Pp03 - View
Quercus lobata QL02p073801 CM012294 + View
Quercus lobata QL03p056428 3 + View
Rosa chinensis RcHm_v2.0_Chr2g0173491 RcHm_v2.0_Chr2 - View
Striga asiatica SGA_v2.0_scaffold100G29582 scaffold100 - View
Salvia bowleyana SalBow2G2722 GWHASIU00000007 - View
Simmondsia chinensis Sc14g0008790 GWHAASQ00000014 - View
Solanum lycopersicum Solyc05g013820.4 Proteasome subunit beta (AHRD V3.3 *** A0A2G2VMP0_CAPBA) SL4.0ch05 - View
Schrenkiella parvula Sp2g16630 K02739 - 20S proteasome subunit beta 2 (PSMB7) ch2-4 + View
Solanum pennellii Sopen05g008730 Encodes 20S proteasome beta subunit PBB1 (PBB1). | PBB1 | FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity | INVOLVED IN: ubiquitin-dependent protein catabolic process | LOCATED IN: proteasome core complex, proteasome complex | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Peptidase T1A, proteasome beta-subunit , Proteasome, subunit alpha/beta | BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit PBB2 ., Proteasome, subunit alpha/beta, Proteasome subunit beta type 6 precursor (EC 3.4.25.1) (Proteasome delta chain) (Tobacco cryptogein-induced protein 7) (tcI 7) - Nicotiana tabacum (Common tobacco) Spenn-ch05 - View
Solanum tuberosum PGSC0003DMG400016969 Proteasome subunit beta type ST4.03ch05 - View
Selenicereus undatus Hund25405 Scaffold_3410 - View
Trochodendron aralioides TAR629G3311 group0 + View
Theobroma cacao Thecc.04G021600 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein Chromosome_4 - View
Theobroma cacao Thecc.02G265500 Chromosome_2 - View
Tarenaya hassleriana THA.LOC104805358 proteasome subunit beta type-7-A isoform X1 NW_010961290.1 + View
Trifolium pratense TPR.G1129 Tp57577_TGAC_v2_LG6 + View
Tripterygium wilfordii TWI75G1303 NC_052253.1 - View
Tripterygium wilfordii TWI18G0811 NC_052241.1 - View
Vaccinium macrocarpon vmacro16167 Similar to PBB1: Proteasome subunit beta type-7-A (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01000574001 chr1 + View