Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0008121 hypothetical protein POPTR_0010s15770g, partial [Populus trichocarpa] Chr5 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG10G5840 LG-10 + View
Acer truncatum Atru.chr5.964 chr5 + View
Acer truncatum Atru.chr4.3048 chr4 - View
Actinidia chinensis Actinidia13351 Lachesis_group10 + View
Actinidia chinensis Actinidia14253 Lachesis_group18 - View
Avicennia marina MSTRG.21704 ScioBoG_26769_HRSCAF_26899 - View
Avicennia marina MSTRG.18086 ScioBoG_22153_HRSCAF_22259 + View
Amaranthus hybridus Ah.13g071430 AmaHy_arrow1_Scaffold_13 - View
Aquilegia oxysepala Aqoxy2G02692 CHR02 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ZU7UIY K13207 - CUG-BP- and ETR3-like factor (CUGBP, BRUNOL, CELF) arahy.Tifrunner.gnm1.Arahy.01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.R0SDX6 K13207 - CUG-BP- and ETR3-like factor (CUGBP, BRUNOL, CELF) arahy.Tifrunner.gnm1.Arahy.06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.TK9WZW PTHR24012//PTHR24012:SF382 - FAMILY NOT NAMED // FLOWERING TIME CONTROL PROTEIN FCA-RELATED arahy.Tifrunner.gnm1.Arahy.11 - View
Arabidopsis thaliana AT4G16280 flowering time control protein FCA Involved in the promotion of the transition of the vegetative meristem to reproductive development. Four forms of the protein (alpha%2C beta%2C delta and gamma) are produced by alternative splicing. Involved in RNA-mediated chromatin silencing. At one point it was believed to act as an abscisic acid receptor but the paper describing that function was retracted. Flowering time control protein (FCA) FCA%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Ribonucleoprotein%2C BRUNO-like (InterPro:IPR015903)%2C WW/Rsp5/WWP (InterPro:IPR001202)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: flowering time control protein-related / FCA gamma-related (TAIR:AT2G47310.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). RNA binding%3Babscisic acid binding%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C WW/Rsp5/WWP (InterPro:IPR001202)%2C Ribonucleoprotein%2C BRUNO-like (InterPro:IPR015903)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: flowering time control protein-related / FCA gamma-related (TAIR:AT2G47310.1). Chr4 - View
Beta vulgaris EL10Ac3g05531 PTHR24012:SF382 - FLOWERING TIME CONTROL PROTEIN FCA-RELATED Chr3_EL10_PGA_scaffold7 - View
Beta vulgaris EL10As5g23564 K13207 - CUG-BP- and ETR3-like factor (CUGBP, BRUNOL, CELF) Scaffold_0005 - View
Cannabis sativa CANSAT25G3309 NC_044370.1 - View
Cicer arietinum L. Ca_21427_v3 Ca_LG7_v3 + View
Coffea canephora Cc03_g00650 Putative uncharacterized protein chr3 + View
Citrus clementina Ciclev10006289m.g scaffold_9 + View
Citrus clementina Ciclev10019644m.g scaffold_3 - View
Carpinus fangiana Cfa015287 Cfa06 + View
Carpinus fangiana Cfa005762 Cfa02 + View
Carya illinoinensis CiPaw.02G073400 K13207 - CUG-BP- and ETR3-like factor (CUGBP, BRUNOL, CELF) Chr02 + View
Citrullus lanatus ClCG06G004470 FCA CG_Chr06 + View
Cucumis melo MELO3C021258.2 flowering time control protein FCA isoform X2 chr11 - View
Corchorus olitorius COL.COLO4_34585 hypothetical protein AWUE01022414.1 + View
Carica papaya Cpa.g.sc18.84 supercontig_18 - View
Carica papaya Cpa.g.sc9.31 supercontig_9 + View
Chenopodium quinoa AUR62024617 FCA: Flowering time control protein FCA C_Quinoa_Scaffold_1992 + View
Chenopodium quinoa AUR62016232 FCA: Flowering time control protein FCA C_Quinoa_Scaffold_3256 - View
Chenopodium quinoa AUR62039258 FCA: Flowering time control protein FCA C_Quinoa_Scaffold_2177 + View
Chenopodium quinoa AUR62011774 FCA: Flowering time control protein FCA C_Quinoa_Scaffold_2008 + View
Capsella rubella Carub.0007s2523 PTHR24012//PTHR24012:SF382 - FAMILY NOT NAMED // FLOWERING TIME CONTROL PROTEIN FCA-RELATED scaffold_7 + View
Cucumis sativus L. CsaV3_3G026590 flowering time control protein FCA chr3 + View
Cucumis sativus L. CsaV3_6G028500 Flowering time control protein fca chr6 + View
Daucus carota DCAR_026991 hypothetical protein DCARv2_Chr8 + View
Davidia involucrata Dinv44266 GWHABJS00000014 - View
Davidia involucrata Dinv33135 GWHABJS00000010 - View
Davidia involucrata Dinv15145 GWHABJS00000016 + View
Durio zibethinus Duzib151G0245 NW_019167904.1 - View
Durio zibethinus Duzib212G0382 The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon NW_019168026.1 + View
Durio zibethinus Duzib138G0012 NW_019167893.1 + View
Erigeron canadensis ECA233G5661 Conyza_canadensis_scaffold:1 + View
Eucalyptus grandis Eucgr.H04064 Chr08 - View
Erythranthe guttata Migut.D00063 scaffold_4 + View
Fragaria x ananassa FAN23G1993 K13207 - CUG-BP- and ETR3-like factor (CUGBP, BRUNOL, CELF) Fvb1-3 + View
Fragaria x ananassa FAN07G0514 K13207 - CUG-BP- and ETR3-like factor (CUGBP, BRUNOL, CELF) Fvb4-4 + View
Fragaria x ananassa FAN12G3734 PF00397 - WW domain (WW) Fvb4-3 - View
Fragaria x ananassa FAN19G1491 PTHR24012:SF382 - FLOWERING TIME CONTROL PROTEIN FCA-RELATED Fvb1-4 + View
Fragaria vesca FvH4_4g20210 K13207 - CUG-BP- and ETR3-like factor (CUGBP, BRUNOL, CELF) Fvb4 + View
Fragaria vesca FvH4_1g26970 K13207 - CUG-BP- and ETR3-like factor (CUGBP, BRUNOL, CELF) Fvb1 + View
Gossypium hirsutum Gohir.A10G173900 PTHR24012//PTHR24012:SF382 - FAMILY NOT NAMED // FLOWERING TIME CONTROL PROTEIN FCA-RELATED A10 - View
Gossypium hirsutum Gohir.D10G180400 PTHR24012//PTHR24012:SF382 - FAMILY NOT NAMED // FLOWERING TIME CONTROL PROTEIN FCA-RELATED D10 - View
Glycine max Glyma.07G237900 K13207 - CUG-BP- and ETR3-like factor (CUGBP, BRUNOL, CELF) Gm07 + View
Glycine max Glyma.17G035500 PTHR24012//PTHR24012:SF382 - FAMILY NOT NAMED // FLOWERING TIME CONTROL PROTEIN FCA-RELATED Gm17 - View
Gossypium raimondii Gorai.011G201900 Chr11 - View
Hydrangea macrophylla Hma1.2p1_0078F.1_g039900 Hma1.2p1_0078F.1 + View
Lupinus albus Lalb_Chr15g0077991 K13207 - CUG-BP- and ETR3-like factor (CUGBP, BRUNOL, CELF) Lalb_Chr15 - View
Lupinus albus Lalb_Chr13g0298581 PTHR24012//PTHR24012:SF382 - FAMILY NOT NAMED // FLOWERING TIME CONTROL PROTEIN FCA-RELATED Lalb_Chr13 - View
Lupinus albus Lalb_Chr07g0181991 K13207 - CUG-BP- and ETR3-like factor (CUGBP, BRUNOL, CELF) Lalb_Chr07 + View
Lotus japonicus Lj4g0013859 K13207 - CUG-BP- and ETR3-like factor (CUGBP, BRUNOL, CELF) chr4 - View
Lonicera japonica Lj6A693T65 GWHAAZE00000006 - View
Lactuca sativa Lsat_1_v5_gn_6_261 PTHR24012:SF382 - FLOWERING TIME CONTROL PROTEIN FCA-RELATED Lsat_1_v8_lg_6 - View
Malus domestica MD09G1285500 flowering time control protein-related / FCA gamma-related Chr09 - View
Malus domestica MD16G1150700 RNA binding Chr16 + View
Malus domestica MD13G1150500 RNA binding Chr13 + View
Manihot esculenta Manes.15G001500 Chromosome15 + View
Manihot esculenta Manes.03G206500 Chromosome03 - View
Manihot esculenta Manes.01G230100 Chromosome01 - View
Medicago truncatula Medtr4g122650 flowering time control FCA-like protein chr4 - View
Nelumbo nucifera Nn3g21739 chr3 + View
Nelumbo nucifera Nn4g25557 chr4 - View
Olea europaea Oeu001158.2 chr22 + View
Petunia axillaris Peaxi162Scf00228g00515 RNA binding Peaxi162Scf00228 - View
Punica granatum PGR004G1092 NC_045131.1 + View
Prunus persica Prupe.3G008500 K13207 - CUG-BP- and ETR3-like factor (CUGBP, BRUNOL, CELF) Pp03 + View
Prunus persica Prupe.1G114600 PTHR24012:SF382 - FLOWERING TIME CONTROL PROTEIN FCA-RELATED Pp01 + View
Pisum sativum Psat4g021880 RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain) chr4LG4 + View
Populus trichocarpa Potri.002G192900 PTHR24012//PTHR24012:SF382 - FAMILY NOT NAMED // FLOWERING TIME CONTROL PROTEIN FCA-RELATED Chr02 + View
Populus trichocarpa Potri.010G147900 PTHR24012//PTHR24012:SF382 - FAMILY NOT NAMED // FLOWERING TIME CONTROL PROTEIN FCA-RELATED Chr10 - View
Phaseolus vulgaris Phvul.003G116400 PTHR24012:SF382 - FLOWERING TIME CONTROL PROTEIN FCA-RELATED Chr03 - View
Quercus lobata QL06p012773 6 - View
Rosa chinensis RcHm_v2.0_Chr4g0425821 RcHm_v2.0_Chr4 - View
Rosa chinensis RcHm_v2.0_Chr3g0487191 RcHm_v2.0_Chr3 + View
Striga asiatica SGA_v2.0_scaffold64G22100 scaffold64 + View
Striga asiatica SGA_v2.0_scaffold157G37332 scaffold157 - View
Salix brachista Sabra10G0114000 GWHAAZH00000010 - View
Simmondsia chinensis Sc25g0003200 GWHAASQ00000025 - View
Sechium edule Sed0003150 LG04 + View
Sapria himalayana SHI00113 scaffold1_25991295 + View
Solanum lycopersicum Solyc01g058450.3 Flowering time control protein FCA (AHRD V3.3 *** A0A2G2XPK6_CAPBA) SL4.0ch01 + View
Solanum pennellii Sopen01g024010 Flowering time control protein (FCA) | RNA binding, abscisic acid binding | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , WW/Rsp5/WWP , Ribonucleoprotein, BRUNO-like , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: flowering time control protein-related / FCA gamma-related . Spenn-ch01 + View
Selenicereus undatus Hund11986 Scaffold_33679 - View
Trochodendron aralioides TAR636G2324 group1 + View
Trochodendron aralioides TAR365G0946 group16 + View
Theobroma cacao Thecc.04G304200 RNA binding Chromosome_4 - View
Theobroma cacao Thecc.01G316900 RNA binding Chromosome_1 - View
Tarenaya hassleriana THA.LOC104821799 flowering time control protein FCA-like isoform X1 NW_010966542.1 - View
Trifolium pratense TPR.G25425 Tp57577_TGAC_v2_LG4 + View
Tripterygium wilfordii TWI73G1144 NC_052232.1 - View
Vaccinium macrocarpon vmacro15174 Similar to FCA: Flowering time control protein FCA (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1215G2798 CM024074.1 + View
Vitis vinifera GSVIVG01034966001 chr5 + View