Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0043989 PREDICTED: DEAD-box ATP-dependent RNA helicase 56 [Vitis vinifera] Chr2 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr7.2410 chr7 - View
Actinidia chinensis Actinidia15675 Lachesis_group27 + View
Actinidia chinensis Actinidia22352 Lachesis_group23 - View
Actinidia chinensis Actinidia13241 Lachesis_group18 + View
Avicennia marina MSTRG.26002 ScioBoG_4119_HRSCAF_4138 - View
Aquilegia oxysepala Aqoxy7G03705 CHR07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.Z9UVJT K12812 - ATP-dependent RNA helicase UAP56/SUB2 (UAP56, BAT1, SUB2) arahy.Tifrunner.gnm1.Arahy.06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.02L0EL PTHR24031//PTHR24031:SF290 - RNA HELICASE // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.19 - View
Arabidopsis thaliana AT5G11170 DEAD/DEAH box RNA helicase family protein One of two genes encoding an ATP-dependent RNA helicase that localizes predominantly to euchromatic regions of Arabidopsis nuclei%2C and associates with genes transcribed by RNA polymerase II independently from the presence of introns. It is not detected at non-transcribed loci. It interacts with ssRNA%2C dsRNA and dsDNA%2C but not with ssDNA. Its ATPase activity is stimulated by RNA and dsDNA and its ATP-dependent RNA helicase activity unwinds dsRNA but not dsDNA. DEAD/DEAH box RNA helicase family protein %3B FUNCTIONS IN: helicase activity%2C ATP-dependent helicase activity%2C nucleic acid binding%2C ATP binding%3B INVOLVED IN: response to cadmium ion%3B LOCATED IN: nucleolus%3B EXPRESSED IN: guard cell%2C root%2C cultured cell%3B CONTAINS InterPro DOMAIN/s: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C RNA helicase%2C DEAD-box type%2C Q motif (InterPro:IPR014014)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT5G11200.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). DEAD/DEAH box RNA helicase family protein %3B FUNCTIONS IN: helicase activity%2C ATP-dependent helicase activity%2C ATP binding%2C nucleic acid binding%3B INVOLVED IN: response to cadmium ion%3B LOCATED IN: nucleolus%3B EXPRESSED IN: guard cell%2C root%2C cultured cell%3B CONTAINS InterPro DOMAIN/s: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT5G11200.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 + View
Brassica carinata BcaC04g19252 ChrC04 - View
Brassica napus A10p26520 A10 - View
Brassica oleracea BolC9t59390H C9 - View
Beta vulgaris EL10Ac2g04241 PTHR24031:SF246 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 15 Chr2_EL10_PGA_scaffold6 + View
Cannabis sativa CANSAT56G4514 NC_044371.1 - View
Corylus avellana Haze_21530 Similar to RH15: DEAD-box ATP-dependent RNA helicase 15 (Arabidopsis thaliana OX%3D3702) 3 + View
Corylus avellana Haze_16535 Similar to AIP1: DEAD-box ATP-dependent RNA helicase 56 (Oryza sativa subsp. japonica OX%3D39947) 11 - View
Coffea canephora Cc08_g00800 Hypothetical protein chr8 + View
Citrus clementina Ciclev10008460m.g scaffold_1 - View
Citrus clementina Ciclev10008383m.g scaffold_1 + View
Carya illinoinensis CiPaw.01G246200 K12812//K13182 - ATP-dependent RNA helicase UAP56/SUB2 (UAP56, BAT1, SUB2) // ATP-dependent RNA helicase DDX39 [EC:3.6.4.13] (DDX39) Chr01 - View
Carya illinoinensis CiPaw.07G222100 K13182 - ATP-dependent RNA helicase DDX39 [EC:3.6.4.13] (DDX39) Chr07 - View
Carya illinoinensis CiPaw.02G156000 K12812//K13182 - ATP-dependent RNA helicase UAP56/SUB2 (UAP56, BAT1, SUB2) // ATP-dependent RNA helicase DDX39 [EC:3.6.4.13] (DDX39) Chr02 - View
Carya illinoinensis CiPaw.08G011900 K12812//K13182 - ATP-dependent RNA helicase UAP56/SUB2 (UAP56, BAT1, SUB2) // ATP-dependent RNA helicase DDX39 [EC:3.6.4.13] (DDX39) Chr08 + View
Citrullus lanatus ClCG08G013310 ATP-dependent RNA helicase CG_Chr08 - View
Cucumis melo MELO3C011256.2 DEAD-box ATP-dependent RNA helicase-like protein chr03 + View
Corchorus olitorius COL.COLO4_18844 hypothetical protein AWUE01016510.1 - View
Chenopodium quinoa AUR62031501 RH56: DEAD-box ATP-dependent RNA helicase 56 C_Quinoa_Scaffold_1206 - View
Cucumis sativus L. CsaV3_2G032030 ATP-dependent RNA helicase chr2 - View
Daucus carota DCAR_025503 hypothetical protein DCARv2_Chr7 - View
Davidia involucrata Dinv38109 GWHABJS00000006 + View
Davidia involucrata Dinv30149 GWHABJS00000003 - View
Davidia involucrata Dinv30587 GWHABJS00000019 + View
Durio zibethinus Duzib187G1755 NW_019167860.1 - View
Durio zibethinus Duzib160G0464 NW_019168015.1 + View
Durio zibethinus Duzib168G0255 NW_019168159.1 + View
Erigeron canadensis ECA246G2439 Conyza_canadensis_scaffold:8 + View
Erigeron canadensis ECA248G0104 Conyza_canadensis_scaffold:9 + View
Eucalyptus grandis Eucgr.C02784 Chr03 + View
Eucalyptus grandis Eucgr.C01749 Chr03 - View
Erythranthe guttata Migut.E01796 scaffold_5 - View
Eutrema salsugineum Thhalv10013628m.g K12812 - ATP-dependent RNA helicase UAP56/SUB2 (UAP56, BAT1, SUB2) scaffold_2 + View
Fragaria x ananassa FAN20G2411 PTHR24031:SF246 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 15 Fvb2-3 + View
Fragaria x ananassa FAN05G2770 PTHR24031:SF246 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 15 Fvb6-3 - View
Fragaria x ananassa FAN27G2260 PTHR24031:SF246 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 15 Fvb2-1 + View
Fragaria x ananassa FAN15G1516 PTHR24031:SF246 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 15 Fvb2-4 + View
Fragaria x ananassa FAN24G1098 PTHR24031:SF246 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 15 Fvb2-2 - View
Fragaria vesca FvH4_2g29210 K12812 - ATP-dependent RNA helicase UAP56/SUB2 (UAP56, BAT1, SUB2) Fvb2 + View
Gossypium hirsutum Gohir.A10G074800 K12812 - ATP-dependent RNA helicase UAP56/SUB2 (UAP56, BAT1, SUB2) A10 + View
Gossypium hirsutum Gohir.D06G099400 K13182 - ATP-dependent RNA helicase DDX39 [EC:3.6.4.13] (DDX39) D06 + View
Gossypium hirsutum Gohir.A06G098202 K13182 - ATP-dependent RNA helicase DDX39 [EC:3.6.4.13] (DDX39) A06 + View
Gossypium hirsutum Gohir.D05G056600 K13182 - ATP-dependent RNA helicase DDX39 [EC:3.6.4.13] (DDX39) D05 - View
Gossypium hirsutum Gohir.D10G076600 K12812 - ATP-dependent RNA helicase UAP56/SUB2 (UAP56, BAT1, SUB2) D10 - View
Gossypium hirsutum Gohir.A13G183300 K13182 - ATP-dependent RNA helicase DDX39 [EC:3.6.4.13] (DDX39) A13 + View
Gossypium hirsutum Gohir.D13G189600 K13182 - ATP-dependent RNA helicase DDX39 [EC:3.6.4.13] (DDX39) D13 + View
Gossypium hirsutum Gohir.A05G054400 K13182 - ATP-dependent RNA helicase DDX39 [EC:3.6.4.13] (DDX39) A05 + View
Glycine max Glyma.04G067600 K12812 - ATP-dependent RNA helicase UAP56/SUB2 (UAP56, BAT1, SUB2) Gm04 + View
Glycine max Glyma.08G211400 PTHR24031//PTHR24031:SF290 - RNA HELICASE // SUBFAMILY NOT NAMED Gm08 - View
Glycine max Glyma.06G069200 K12812 - ATP-dependent RNA helicase UAP56/SUB2 (UAP56, BAT1, SUB2) Gm06 + View
Gossypium raimondii Gorai.011G082500 Chr11 - View
Gossypium raimondii Gorai.009G057600 Chr09 - View
Gossypium raimondii Gorai.013G215200 Chr13 + View
Gossypium raimondii Gorai.010G114300 Chr10 + View
Hydrangea macrophylla Hma1.2p1_0000F.1_g000210 Hma1.2p1_0000F.1 + View
Lupinus albus Lalb_Chr11g0063791 PTHR24031//PTHR24031:SF246 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 15 Lalb_Chr11 + View
Lupinus albus Lalb_Chr25g0279441 PTHR24031//PTHR24031:SF290 - RNA HELICASE // SUBFAMILY NOT NAMED Lalb_Chr25 + View
Lupinus albus Lalb_Chr23g0268571 PTHR24031//PTHR24031:SF246 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 15 Lalb_Chr23 + View
Lupinus albus Lalb_Chr08g0244031 PTHR24031//PTHR24031:SF246 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 15 Lalb_Chr08 - View
Lotus japonicus Lj3g0008509 PTHR24031//PTHR24031:SF290 - RNA HELICASE // SUBFAMILY NOT NAMED chr3 - View
Lotus japonicus Lj1g0014574 K12812 - ATP-dependent RNA helicase UAP56/SUB2 (UAP56, BAT1, SUB2) chr1 - View
Lotus japonicus Lj5g0005365 PTHR24031//PTHR24031:SF246 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 15 chr5 - View
Lonicera japonica Lj8C695G10 GWHAAZE00000008 - View
Lonicera japonica Lj7C721G3 GWHAAZE00000007 - View
Lonicera japonica Lj5A70T52 GWHAAZE00000005 - View
Lonicera japonica Lj8A716G16 GWHAAZE00000008 + View
Lactuca sativa Lsat_1_v5_gn_5_30781 Lsat_1_v8_lg_5 - View
Malus domestica MD15G1124400 DEAD/DEAH box RNA helicase family protein Chr15 - View
Manihot esculenta Manes.11G054900 Chromosome11 - View
Manihot esculenta Manes.16G121100 Chromosome16 - View
Manihot esculenta Manes.03G015600 Chromosome03 + View
Manihot esculenta Manes.04G114500 Chromosome04 + View
Medicago truncatula Medtr1g012420 DEAD-box ATP-dependent RNA helicase-like protein chr1 - View
Medicago truncatula Medtr3g107420 DEAD-box ATP-dependent RNA helicase-like protein chr3 + View
Nelumbo nucifera Nn2g12026 chr2 - View
Nelumbo nucifera Nn8g39449 chr8 - View
Petunia axillaris Peaxi162Scf00643g00323 Spliceosome RNA helicase DDX39B Peaxi162Scf00643 + View
Punica granatum PGR044G0202 NC_045134.1 - View
Prunus persica Prupe.1G479900 K12812 - ATP-dependent RNA helicase UAP56/SUB2 (UAP56, BAT1, SUB2) Pp01 - View
Pisum sativum Psat6g029440 DEAD/DEAH box helicase chr6LG2 + View
Papaver somniferum PSO455G0230 NW_020634374.1 - View
Populus trichocarpa Potri.018G028600 K13182 - ATP-dependent RNA helicase DDX39 [EC:3.6.4.13] (DDX39) Chr18 + View
Populus trichocarpa Potri.006G253100 K13182 - ATP-dependent RNA helicase DDX39 [EC:3.6.4.13] (DDX39) Chr06 - View
Phaseolus vulgaris Phvul.009G093800 K12812 - ATP-dependent RNA helicase UAP56/SUB2 (UAP56, BAT1, SUB2) Chr09 + View
Phaseolus vulgaris Phvul.001G051700 K12812 - ATP-dependent RNA helicase UAP56/SUB2 (UAP56, BAT1, SUB2) Chr01 + View
Quercus lobata QL02p021916 CM012294 + View
Quercus lobata QL05p028530 5 - View
Rosa chinensis RcHm_v2.0_Chr2g0135971 RcHm_v2.0_Chr2 + View
Rosa chinensis RcHm_v2.0_Chr6g0298081 RcHm_v2.0_Chr6 + View
Striga asiatica SGA_v2.0_scaffold20G09137 scaffold20 + View
Striga asiatica SGA_v2.0_scaffold64G21913 scaffold64 - View
Salix brachista Sabra06G0197700 GWHAAZH00000006 - View
Simmondsia chinensis Sc23g0006840 GWHAASQ00000023 + View
Sechium edule Sed0020387 LG01 - View
Sechium edule Sed0013082 LG03 - View
Solanum lycopersicum Solyc06g066060.3 CGI-144 SL4.0ch06 + View
Solanum tuberosum PGSC0003DMG400020476 DEAD-box ATP-dependent RNA helicase 56 ST4.03ch06 - View
Trochodendron aralioides TAR625G0780 group4 + View
Theobroma cacao Thecc.09G026500 DEAD/DEAH box RNA helicase family protein Chromosome_9 + View
Tarenaya hassleriana THA.LOC104799232 DEAD-box ATP-dependent RNA helicase 56 NW_010968505.1 - View
Trifolium pratense TPR.G15677 Tp57577_TGAC_v2_LG1 - View
Trifolium pratense TPR.G3130 Tp57577_TGAC_v2_LG7 - View
Tripterygium wilfordii TWI63G0460 NC_052240.1 - View
Tripterygium wilfordii TWI34G1791 NC_052235.1 + View
Vaccinium macrocarpon vmacro16905 Similar to RH56: DEAD-box ATP-dependent RNA helicase 56 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro05183 Similar to RH56: DEAD-box ATP-dependent RNA helicase 56 (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1309G1007 CM024072.1 - View
Vigna mungo VMungo0647G0658 CM024073.1 + View
Vitis vinifera GSVIVG01035843001 chr4 - View
Vitis vinifera GSVIVG01017308001 chr9 - View