Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0035180 hypothetical protein JCGZ_12413 [Jatropha curcas] Contig1251 + View
CSS0024447 conserved hypothetical protein [Ricinus communis] Chr2 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G13240 LG-8 + View
Acer truncatum Atru.chr5.2655 chr5 + View
Acer truncatum Atru.chr13.724 chr13 - View
Actinidia chinensis Actinidia16475 Lachesis_group25 - View
Actinidia chinensis Actinidia12042 Lachesis_group11 + View
Actinidia chinensis Actinidia01095 Lachesis_group26 - View
Actinidia chinensis Actinidia22646 Lachesis_group28 - View
Arabidopsis lyrata AL3G47260 scaffold_3 + View
Arabidopsis lyrata AL8G44240 scaffold_8 + View
Avicennia marina MSTRG.20166 ScioBoG_26180_HRSCAF_26306 - View
Avicennia marina MSTRG.25076 ScioBoG_4119_HRSCAF_4138 + View
Avicennia marina MSTRG.1069 ScioBoG_102833_HRSCAF_103052 + View
Aquilegia oxysepala Aqoxy5G01195 CHR05 + View
Aquilegia oxysepala Aqoxy6G01277 CHR06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.LV8RP1 PTHR22937//PTHR22937:SF55 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.U8FDA3 PF13639 - Ring finger domain (zf-RING_2) arahy.Tifrunner.gnm1.Arahy.05 + View
Arabidopsis thaliana AT2G15530 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G34040.1)%3B Has 9020 Blast hits to 8257 proteins in 301 species: Archae - 0%3B Bacteria - 55%3B Metazoa - 2556%3B Fungi - 687%3B Plants - 3907%3B Viruses - 28%3B Other Eukaryotes - 1787 (source: NCBI BLink). RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G34040.1). Chr2 + View
Arabidopsis thaliana AT5G67120 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G34040.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaC06g34792 ChrC06 - View
Brassica carinata BcaB07g31787 ChrB07 - View
Brassica carinata BcaC04g23045 ChrC04 - View
Brassica napus C07p24650 C07 + View
Brassica napus A07p16840 A07 + View
Brassica napus C09p12760 C09 + View
Brassica oleracea BolC9t54163H C9 + View
Brassica oleracea BolC7t42985H C7 + View
Brassica rapa BraA07t29409Z A07 + View
Brassica rapa BraA09t36721Z A09 + View
Beta vulgaris EL10Ac6g15727 PF13639 - Ring finger domain (zf-RING_2) Chr6_EL10_PGA_scaffold0 + View
Capsicum annuum CAN.G370.45 PGAv.1.6.scaffold370 + View
Cannabis sativa CANSAT25G2748 NC_044370.1 - View
Cicer arietinum L. Ca_24756_v3 Ca_LG8_v3 + View
Cicer arietinum L. Ca_18706_v3 Ca_LG6_v3 - View
Corylus avellana Haze_18037 Similar to RHG1A: Probable E3 ubiquitin-protein ligase RHG1A (Arabidopsis thaliana OX%3D3702) 7 - View
Corylus avellana Haze_15378 Similar to HIP1: Probable E3 ubiquitin-protein ligase HIP1 (Oryza sativa subsp. japonica OX%3D39947) 11 + View
Coffea canephora Cc02_g18950 Putative RING/U-box superfamily protein chr2 - View
Coffea canephora Cc10_g04640 Putative RING/U-box superfamily protein chr10 - View
Citrus clementina Ciclev10027894m.g scaffold_8 + View
Citrus clementina Ciclev10000459m.g scaffold_5 + View
Carpinus fangiana Cfa004035 Cfa01 - View
Carpinus fangiana Cfa018070 Cfa07 + View
Cardamine hirsuta CARHR105820 RING/U-box superfamily protein Chr3 + View
Cardamine hirsuta CARHR280530 RING/U-box superfamily protein Chr8 + View
Carya illinoinensis CiPaw.01G016400 PTHR22937//PTHR22937:SF55 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr01 + View
Carya illinoinensis CiPaw.16G040500 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr16 + View
Carya illinoinensis CiPaw.02G007700 PTHR22937//PTHR22937:SF55 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr02 + View
Carya illinoinensis CiPaw.15G054500 K10635 - E3 ubiquitin-protein ligase Arkadia [EC:6.3.2.19] (RNF111) Chr15 + View
Citrullus lanatus ClCG08G016100 RING/U-box superfamily protein LENGTH=691 CG_Chr08 - View
Cucumis melo MELO3C010842.2 E3 ubiquitin-protein ligase MBR2 chr03 - View
Carica papaya Cpa.g.sc21.175 supercontig_21 + View
Carica papaya Cpa.g.sc55.126 supercontig_55 - View
Chenopodium quinoa AUR62001912 Protein of unknown function C_Quinoa_Scaffold_4480 + View
Capsella rubella Carub.0008s2739 scaffold_8 + View
Cucumis sativus L. CsaV3_2G026530 E3 ubiquitin-protein ligase MBR2 chr2 + View
Daucus carota DCAR_022013 hypothetical protein DCARv2_Chr6 - View
Davidia involucrata Dinv42168 GWHABJS00000002 + View
Davidia involucrata Dinv39290 GWHABJS00000011 + View
Durio zibethinus Duzib132G0227 The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons NW_019167915.1 - View
Durio zibethinus Duzib187G1450 NW_019167860.1 + View
Durio zibethinus Duzib041G0535 NW_019167826.1 - View
Durio zibethinus Duzib248G1643 NW_019168048.1 + View
Durio zibethinus Duzib147G0229 NW_019168470.1 + View
Durio zibethinus Duzib093G1398 NW_019167937.1 + View
Erigeron canadensis ECA232G0431 Conyza_canadensis_scaffold:2 - View
Erigeron canadensis ECA236G2033 Conyza_canadensis_scaffold:3 + View
Eucalyptus grandis Eucgr.F02323 Chr06 - View
Eucalyptus grandis Eucgr.I01135 Chr09 + View
Eucalyptus grandis Eucgr.F00204 Chr06 - View
Erythranthe guttata Migut.N02748 scaffold_14 + View
Erythranthe guttata Migut.C00560 scaffold_3 + View
Erythranthe guttata Migut.B00363 scaffold_2 - View
Eutrema salsugineum Thhalv10005473m.g PTHR22937 - RING FINGER CONTAINING PROTEIN scaffold_6 - View
Fragaria x ananassa FAN24G2489 KOG1493//KOG2930 - Anaphase-promoting complex (APC), subunit 11 // SCF ubiquitin ligase, Rbx1 component Fvb2-2 - View
Fragaria x ananassa FAN27G1863 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb2-1 + View
Fragaria x ananassa FAN15G3694 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb2-4 + View
Fragaria x ananassa FAN20G2802 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb2-3 - View
Fragaria x ananassa FAN24G2043 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb2-2 - View
Fragaria x ananassa FAN20G1867 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb2-3 - View
Fragaria x ananassa FAN15G1912 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb2-4 + View
Fragaria x ananassa FAN27G0573 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb2-1 + View
Fragaria vesca FvH4_2g34090 KOG1493//KOG2930 - Anaphase-promoting complex (APC), subunit 11 // SCF ubiquitin ligase, Rbx1 component Fvb2 + View
Gossypium hirsutum Gohir.D05G207300 K10635 - E3 ubiquitin-protein ligase Arkadia [EC:6.3.2.19] (RNF111) D05 - View
Gossypium hirsutum Gohir.A05G204100 K10635 - E3 ubiquitin-protein ligase Arkadia [EC:6.3.2.19] (RNF111) A05 - View
Gossypium hirsutum Gohir.D13G040300 K10635 - E3 ubiquitin-protein ligase Arkadia [EC:6.3.2.19] (RNF111) D13 - View
Gossypium hirsutum Gohir.D11G200700 PTHR22937//PTHR22937:SF55 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED D11 - View
Gossypium hirsutum Gohir.D12G070300 PTHR22937//PTHR22937:SF55 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED D12 + View
Gossypium hirsutum Gohir.A11G193500 PTHR22937//PTHR22937:SF55 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED A11 - View
Gossypium hirsutum Gohir.D06G018500 K10635 - E3 ubiquitin-protein ligase Arkadia [EC:6.3.2.19] (RNF111) D06 + View
Gossypium hirsutum Gohir.A13G041600 K10635 - E3 ubiquitin-protein ligase Arkadia [EC:6.3.2.19] (RNF111) A13 - View
Glycine max Glyma.07G214600 PTHR22937//PTHR22937:SF55 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Gm07 - View
Glycine max Glyma.17G240800 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm17 + View
Glycine max Glyma.06G041000 K10635 - E3 ubiquitin-protein ligase Arkadia [EC:6.3.2.19] (RNF111) Gm06 - View
Glycine max Glyma.17G172100 PTHR14155//PTHR14155:SF163 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm17 + View
Gossypium raimondii Gorai.013G045200 Chr13 - View
Gossypium raimondii Gorai.007G214900 Chr07 - View
Gossypium raimondii Gorai.009G213900 Chr09 - View
Gossypium raimondii Gorai.008G077400 Chr08 - View
Hydrangea macrophylla Hma1.2p1_0360F.1_g135710 Hma1.2p1_0360F.1 - View
Lotus japonicus Lj4g0022544 K19041 - E3 ubiquitin-protein ligase RNF38/44 [EC:6.3.2.19] (RNF38_44) chr4 + View
Lotus japonicus Lj1g0026591 K10635 - E3 ubiquitin-protein ligase Arkadia [EC:6.3.2.19] (RNF111) chr1 + View
Lonicera japonica Lj4C61T9 GWHAAZE00000004 - View
Lonicera japonica Lj4C769G12 GWHAAZE00000004 + View
Lactuca sativa Lsat_1_v5_gn_1_21720 Lsat_1_v8_lg_1 + View
Lactuca sativa Lsat_1_v5_gn_0_4280 PTHR22937//PTHR22937:SF55 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Lsat_1_v8_lg_7 + View
Malus domestica MD08G1097400 RING/U-box superfamily protein Chr08 + View
Malus domestica MD05G1083400 RING/U-box superfamily protein Chr05 - View
Malus domestica MD15G1079700 RING/U-box superfamily protein Chr15 + View
Manihot esculenta Manes.13G122800 Chromosome13 + View
Manihot esculenta Manes.18G039700 Chromosome18 - View
Medicago truncatula Medtr4g085625 hypothetical protein chr4 + View
Medicago truncatula Medtr5g016920 zinc finger, C3HC4 type (RING finger) protein chr5 + View
Nelumbo nucifera Nn1g04799 chr1 + View
Nicotiana tabacum Nitab4.5_0000287g0070 Zinc finger, RING/FYVE/PHD-type, Zinc finger, RING-type Nitab4.5_0000287 + View
Nicotiana tabacum Nitab4.5_0002029g0070 Zinc finger, RING-type, Zinc finger, RING/FYVE/PHD-type Nitab4.5_0002029 - View
Olea europaea Oeu014829.1 chr10 + View
Petunia axillaris Peaxi162Scf00016g02027 RING/U-box superfamily protein Peaxi162Scf00016 - View
Petunia axillaris Peaxi162Scf00450g00025 PLC-like phosphodiesterases superfamily protein Peaxi162Scf00450 + View
Punica granatum PGR102G0481 NC_045129.1 + View
Punica granatum PGR142G3349 NC_045128.1 + View
Punica granatum PGR083G0833 NC_045133.1 - View
Punica granatum PGR031G2886 NC_045127.1 - View
Prunus persica Prupe.8G127800 Pp08 - View
Prunus persica Prupe.1G432700 K10635 - E3 ubiquitin-protein ligase Arkadia [EC:6.3.2.19] (RNF111) Pp01 + View
Pisum sativum Psat7g126120 Ring finger domain chr7LG7 - View
Pisum sativum Psat4g086320 Ring finger domain chr4LG4 + View
Papaver somniferum PSO210G7164 NC_039359.1 - View
Papaver somniferum PSO170G6274 NC_039360.1 - View
Papaver somniferum PSO675G7872 NC_039358.1 - View
Populus trichocarpa Potri.009G100100 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr09 + View
Populus trichocarpa Potri.001G304900 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr01 + View
Populus trichocarpa Potri.002G124300 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr02 + View
Populus trichocarpa Potri.007G045500 PTHR22937//PTHR22937:SF55 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr07 - View
Populus trichocarpa Potri.005G139900 PTHR22937//PTHR22937:SF55 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr05 - View
Phaseolus vulgaris Phvul.003G242600 PTHR22937 - RING FINGER CONTAINING PROTEIN Chr03 + View
Phaseolus vulgaris Phvul.009G066000 K10635 - E3 ubiquitin-protein ligase Arkadia [EC:6.3.2.19] (RNF111) Chr09 - View
Quercus lobata QL11p034968 11 + View
Quercus lobata QL02p004379 CM012294 + View
Quercus lobata QL06p040897 6 + View
Rosa chinensis RcHm_v2.0_Chr6g0308261 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim05G0086400 chr05 - View
Rhododendron simsii Rhsim06G0052700 chr06 - View
Rhododendron simsii Rhsim08G0099500 chr08 + View
Rhododendron simsii Rhsim07G0227200 chr07 + View
Striga asiatica SGA_v2.0_scaffold28G11811 scaffold28 + View
Striga asiatica SGA_v2.0_scaffold90G27622 scaffold90 + View
Salix brachista Sabra16G0191500 GWHAAZH00000016 + View
Salix brachista Sabra02G0097600 GWHAAZH00000002 + View
Salix brachista Sabra07G0040500 GWHAAZH00000007 - View
Salix brachista Sabra09G0076100 GWHAAZH00000009 + View
Sechium edule Sed0014852 LG10 + View
Solanum lycopersicum Solyc01g107930.3 RING/U-box superfamily protein (AHRD V3.3 *-* A0A1P8B1Z6_ARATH) SL4.0ch01 + View
Solanum lycopersicum Solyc04g078680.4 RING/U-box superfamily protein (AHRD V3.3 *-* A0A2U1PN10_ARTAN) SL4.0ch04 + View
Solanum pennellii Sopen01g050100 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch01 + View
Solanum pennellii Sopen04g032280 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch04 + View
Solanum tuberosum PGSC0003DMG400025779 RING zinc finger protein ST4.03ch01 + View
Solanum tuberosum PGSC0003DMG400007954 Zinc finger protein ST4.03ch04 + View
Selenicereus undatus Hund13543 Scaffold_33679 + View
Trochodendron aralioides TAR381G0132 group11 - View
Trochodendron aralioides TAR625G0353 group4 - View
Trochodendron aralioides TAR628G0833 group5 + View
Trochodendron aralioides TAR376G0642 group14 + View
Theobroma cacao Thecc.02G103000 Binding protein Chromosome_2 - View
Theobroma cacao Thecc.01G058900 Chromosome_1 - View
Theobroma cacao Thecc.08G003700 RING/U-box superfamily protein Chromosome_8 + View
Tarenaya hassleriana THA.LOC104819572 E3 ubiquitin-protein ligase MBR2-like isoform X1 NW_010966177.1 + View
Tarenaya hassleriana THA.LOC104821253 E3 ubiquitin-protein ligase RLIM-like NW_010966459.1 + View
Tarenaya hassleriana THA.LOC104827193 probable E3 ubiquitin-protein ligase RHG1A isoform X1 NW_010960188.1 - View
Trifolium pratense TPR.G19086 Tp57577_TGAC_v2_LG1 + View
Tripterygium wilfordii TWI31G1329 NC_052233.1 + View
Vaccinium macrocarpon vmacro17959 Similar to HIP1: Probable E3 ubiquitin-protein ligase HIP1 (Oryza sativa subsp. japonica OX%3D39947) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro21501 Similar to RHG1A: Probable E3 ubiquitin-protein ligase RHG1A (Arabidopsis thaliana OX%3D3702) chr10_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro04442 Similar to RHG1A: Probable E3 ubiquitin-protein ligase RHG1A (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0251G2889 CM024069.1 + View
Vitis vinifera GSVIVG01009465001 chr18 + View
Vitis vinifera GSVIVG01022103001 chr7 - View
Vitis vinifera GSVIVG01031717001 chr3 + View