Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0006677 PREDICTED: serine/arginine-rich splicing factor 4 isoform X1 [Prunus mume] Chr11 + View
CSS0011362 hypothetical protein JCGZ_23223 [Jatropha curcas] Contig465 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr5.981 chr5 + View
Acer truncatum Atru.chr2.201 chr2 - View
Actinidia chinensis Actinidia20989 Lachesis_group9 - View
Actinidia chinensis Actinidia16859 Lachesis_group12 + View
Actinidia chinensis Actinidia35519 Lachesis_group2 + View
Arabidopsis lyrata AL1G66140 scaffold_1 - View
Avicennia marina MSTRG.18095 ScioBoG_22153_HRSCAF_22259 + View
Amaranthus hybridus Ah.04g158660 RNA polymerase II-associated protein 3 AmaHy_arrow1_Scaffold_4 + View
Aquilegia oxysepala Aqoxy2G02739 CHR02 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.0F9TFU PF04438//PF04795 - HIT zinc finger (zf-HIT) // PAPA-1-like conserved region (PAPA-1) arahy.Tifrunner.gnm1.Arahy.16 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.Y2Y4QF PTHR22904:SF323 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT arahy.Tifrunner.gnm1.Arahy.19 - View
Arabidopsis thaliana AT1G56440 Tetratricopeptide repeat (TPR)-like superfamily protein Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010%2C Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones. Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B BEST Arabidopsis thaliana protein match is: translocon at the outer membrane of chloroplasts 64-III (TAIR:AT3G17970.1)%3B Has 12676 Blast hits to 9635 proteins in 732 species: Archae - 310%3B Bacteria - 2903%3B Metazoa - 3634%3B Fungi - 1231%3B Plants - 1760%3B Viruses - 0%3B Other Eukaryotes - 2838 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaC09g49554 ChrC09 - View
Brassica napus A01p27480 A01 - View
Beta vulgaris EL10Ac4g09460 PF13877 - Potential Monad-binding region of RPAP3 (RPAP3_C) Chr4_EL10_PGA_scaffold1 - View
Beta vulgaris EL10As5g23542 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Scaffold_0005 - View
Capsicum annuum CAN.G1280.31 PGAv.1.6.scaffold1280 - View
Capsicum annuum CAN.G1076.16 PGAv.1.6.scaffold1076 - View
Cannabis sativa CANSAT54G2406 NC_044375.1 + View
Cicer arietinum L. Ca_21445_v3 Ca_LG7_v3 + View
Cicer arietinum L. Ca_10175_v3 Ca_LG4_v3 - View
Corylus avellana Haze_04057 Protein of unknown function 2 + View
Corylus avellana Haze_05057 Protein of unknown function 2 - View
Coffea canephora Cc01_g21510 Putative HIT zinc finger ;PAPA-1-like conserved region chr1 - View
Coffea canephora Cc02_g35070 Putative RNA polymerase II-associated protein 3 chr2 - View
Citrus clementina Ciclev10003914m.g scaffold_5 - View
Citrus clementina Ciclev10004963m.g scaffold_9 + View
Citrus clementina Ciclev10023762m.g scaffold_3 - View
Ceratophyllum demersum CDE09G1391 7 + View
Carpinus fangiana Cfa005783 Cfa02 + View
Carpinus fangiana Cfa006706 Cfa02 - View
Carya illinoinensis CiPaw.07G118500 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Chr07 - View
Carya illinoinensis CiPaw.07G030000 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Chr07 - View
Carya illinoinensis CiPaw.08G155000 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Chr08 + View
Carya illinoinensis CiPaw.02G075600 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Chr02 + View
Carya illinoinensis CiPaw.08G088900 PF04438//PF04795 - HIT zinc finger (zf-HIT) // PAPA-1-like conserved region (PAPA-1) Chr08 + View
Citrullus lanatus ClCG02G014870 Serine/threonine-protein phosphatase CG_Chr02 + View
Cucumis melo MELO3C004179.2 RNA polymerase II-associated protein 3 chr05 + View
Cucumis melo MELO3C015918.2 HIT zinc finger,PAPA-1-like conserved region, putative chr01 + View
Corchorus olitorius COL.COLO4_05547 PAPA-1-like conserved region AWUE01012367.1 + View
Carica papaya Cpa.g.sc18.58 supercontig_18 - View
Carica papaya Cpa.g.sc9.69 supercontig_9 + View
Carica papaya Cpa.g.sc48.165 supercontig_48 - View
Chenopodium quinoa AUR62011794 Protein of unknown function C_Quinoa_Scaffold_2008 + View
Chenopodium quinoa AUR62000388 Rpap3: RNA polymerase II-associated protein 3 C_Quinoa_Scaffold_2088 + View
Chenopodium quinoa AUR62024641 Protein of unknown function C_Quinoa_Scaffold_1992 + View
Chenopodium quinoa AUR62016120 Protein of unknown function C_Quinoa_Scaffold_3256 + View
Capsella rubella Carub.0002s0768 PTHR21561:SF12 - INO80 COMPLEX SUBUNIT B scaffold_2 - View
Cucumis sativus L. CsaV3_2G007140 RNA polymerase II-associated 3 chr2 - View
Cucumis sativus L. CsaV3_7G030020 INO80 complex subunit B-like conserved region chr7 - View
Daucus carota DCAR_029350 hypothetical protein DCARv2_Chr9 + View
Davidia involucrata Dinv24448 GWHABJS00000005 + View
Davidia involucrata Dinv15186 GWHABJS00000016 + View
Davidia involucrata Dinv33126 GWHABJS00000010 - View
Davidia involucrata Dinv10110 GWHABJS00000007 + View
Durio zibethinus Duzib106G0021 NW_019168492.1 + View
Durio zibethinus Duzib177G1143 NW_019168004.1 - View
Durio zibethinus Duzib133G1523 NW_019167938.1 + View
Durio zibethinus Duzib052G0070 NW_019167849.1 - View
Durio zibethinus Duzib151G0983 NW_019167904.1 - View
Durio zibethinus Duzib138G1716 NW_019167893.1 + View
Eucalyptus grandis Eucgr.K03549 Chr11 - View
Eucalyptus grandis Eucgr.L00263 Chr02 - View
Erythranthe guttata Migut.B00963 scaffold_2 - View
Erythranthe guttata Migut.D00076 scaffold_4 + View
Eutrema salsugineum Thhalv10023443m.g scaffold_8 - View
Fragaria x ananassa FAN05G0225 PTHR22904//PTHR22904:SF323 - TPR REPEAT CONTAINING PROTEIN // CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT Fvb6-3 + View
Fragaria x ananassa FAN02G4226 PF04795//PF13414//PF13877 - PAPA-1-like conserved region (PAPA-1) // TPR repeat (TPR_11) // Potential Monad-binding region of RPAP3 (RPAP3_C) Fvb6-4 - View
Fragaria x ananassa FAN14G4490 PF04438//PF04795//PF13414//PF13877 - HIT zinc finger (zf-HIT) // PAPA-1-like conserved region (PAPA-1) // TPR repeat (TPR_11) // Potential Monad-binding region of RPAP3 (RPAP3_C) Fvb6-1 + View
Fragaria x ananassa FAN12G1694 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Fvb4-3 + View
Fragaria x ananassa FAN09G1839 PF04795//PF13414//PF13877 - PAPA-1-like conserved region (PAPA-1) // TPR repeat (TPR_11) // Potential Monad-binding region of RPAP3 (RPAP3_C) Fvb6-2 + View
Fragaria vesca FvH4_6g07471 PTHR22904:SF323 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT Fvb6 - View
Gossypium hirsutum Gohir.D07G133300 PF04795 - PAPA-1-like conserved region (PAPA-1) D07 - View
Gossypium hirsutum Gohir.A11G273700 PTHR22904:SF323 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT A11 - View
Gossypium hirsutum Gohir.D11G283800 PTHR22904:SF323 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT D11 - View
Gossypium hirsutum Gohir.D02G058700 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) D02 - View
Gossypium hirsutum Gohir.A02G054000 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) A02 - View
Gossypium hirsutum Gohir.A07G128900 PF04795 - PAPA-1-like conserved region (PAPA-1) A07 - View
Glycine max Glyma.17G032902 Gm17 - View
Glycine max Glyma.20G096900 PTHR22904:SF323 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT Gm20 + View
Glycine max Glyma.10G146800 PTHR22904:SF323 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT Gm10 + View
Gossypium raimondii Gorai.007G306700 Chr07 - View
Gossypium raimondii Gorai.005G066400 Chr05 - View
Gossypium raimondii Gorai.001G144600 Chr01 - View
Hydrangea macrophylla Hma1.2p1_0008F-1.1_g005580 Hma1.2p1_0008F-1.1 + View
Lupinus albus Lalb_Chr02g0147791 PTHR22904:SF323 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT Lalb_Chr02 + View
Lotus japonicus Lj5g0009841 PTHR22904:SF323 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT chr5 + View
Lonicera japonica Lj5A331T38 GWHAAZE00000005 + View
Lactuca sativa Lsat_1_v5_gn_9_121880 PF04795 - PAPA-1-like conserved region (PAPA-1) Lsat_1_v8_lg_9 + View
Magnolia biondii MBI18_g17310_MAGBIO AED:0.07 Chr18 - View
Magnolia biondii MBI19_g40072_MAGBIO AED:0.05 Chr19 + View
Malus domestica MD12G1205400 HIT zinc finger Chr12 + View
Malus domestica MD13G1155600 HIT zinc finger Chr13 + View
Malus domestica MD16G1155200 Chr16 + View
Manihot esculenta Manes.08G110850 Chromosome08 + View
Manihot esculenta Manes.05G004500 Chromosome05 - View
Manihot esculenta Manes.03G204100 Chromosome03 - View
Manihot esculenta Manes.09G177200 Chromosome09 - View
Medicago truncatula Medtr1g084100 TPR domain protein chr1 - View
Nelumbo nucifera Nn4g25585 chr4 + View
Nicotiana tabacum Nitab4.5_0000368g0010 Zinc finger, HIT-type, INO80 complex subunit B-like conserved region Nitab4.5_0000368 + View
Olea europaea Oeu038024.1 chr12 + View
Oryza sativa ssp. japonica Os12g0561200 Similar to PAPA-1-like conserved region family protein, expressed. Zinc finger, HIT-type domain containing protein. chr12 - View
Oryza sativa ssp. japonica Os05g0129900 Tetratricopeptide-like helical domain containing protein. chr05 - View
Petunia axillaris Peaxi162Scf00673g00437 HIT zinc finger Peaxi162Scf00673 - View
Punica granatum PGR044G2294 NC_045134.1 - View
Punica granatum PGR083G1716 NC_045133.1 + View
Prunus persica Prupe.6G312500 PF04438//PF04795//PF13414 - HIT zinc finger (zf-HIT) // PAPA-1-like conserved region (PAPA-1) // TPR repeat (TPR_11) Pp06 + View
Papaver somniferum PSO210G4454 NC_039359.1 + View
Papaver somniferum PSO357G0595 NW_020622934.1 + View
Papaver somniferum PSO170G0296 NC_039360.1 + View
Populus trichocarpa Potri.002G195066 Chr02 + View
Populus trichocarpa Potri.005G014000 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Chr05 + View
Populus trichocarpa Potri.013G008300 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Chr13 + View
Populus trichocarpa Potri.008G106200 PTHR21561:SF12 - INO80 COMPLEX SUBUNIT B Chr08 + View
Populus trichocarpa Potri.014G119600 PF04795 - PAPA-1-like conserved region (PAPA-1) Chr14 + View
Populus trichocarpa Potri.010G144000 Chr10 - View
Phaseolus vulgaris Phvul.007G201600 Chr07 - View
Quercus lobata QL06p011851 6 - View
Quercus lobata QL03p013832 3 - View
Quercus lobata QL03p014779 3 + View
Rosa chinensis RcHm_v2.0_Chr3g0457141 RcHm_v2.0_Chr3 - View
Rhododendron simsii Rhsim11G0095300 chr11 - View
Rhododendron simsii Rhsim13G0004400 chr13 + View
Striga asiatica SGA_v2.0_scaffold376G50288 scaffold376 - View
Salvia bowleyana SalBow7G3301 GWHASIU00000005 - View
Salix brachista Sabra14G0088600 GWHAAZH00000014 + View
Salix brachista Sabra02G0161700 GWHAAZH00000002 - View
Salix brachista Sabra13G0007000 GWHAAZH00000013 + View
Salix brachista Sabra05G0009600 GWHAAZH00000005 + View
Salix brachista Sabra05G0021100 GWHAAZH00000005 + View
Simmondsia chinensis Sc09g0002630 GWHAASQ00000009 + View
Simmondsia chinensis Sc17g0000430 GWHAASQ00000017 + View
Sechium edule Sed0025878 LG11 - View
Solanum lycopersicum Solyc01g100540.4 HIT zinc finger and PAPA-1-like domain-containing protein (AHRD V3.3 *-* Q8GYE3_ARATH) SL4.0ch01 - View
Solanum pennellii Sopen01g044050 HIT zinc finger , PAPA-1-like conserved region | LOCATED IN: chloroplast | CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type , PAPA-1-like conserved region | BEST Arabidopsis thaliana protein match is: HIT zinc finger , PAPA-1-like conserved region . Spenn-ch01 - View
Solanum tuberosum PGSC0003DMG400002766 Conserved gene of unknown function ST4.03ch01 - View
Selenicereus undatus Hund07313 Scaffold_33676 + View
Trochodendron aralioides TAR362G0447 group17 + View
Trochodendron aralioides TAR633G1266 group2 - View
Trochodendron aralioides TAR365G0840 group16 + View
Theobroma cacao Thecc.01G314700 HIT zinc finger Chromosome_1 - View
Theobroma cacao Thecc.05G323400 Tetratricopeptide repeat (TPR)-like superfamily protein Chromosome_5 - View
Tarenaya hassleriana THA.LOC104816892 RNA polymerase II-associated protein 3 isoform X1 NW_010965869.1 - View
Trifolium pratense TPR.G2618 Tp57577_TGAC_v2_LG1 - View
Tripterygium wilfordii TWI56G0128 NC_052242.1 + View
Tripterygium wilfordii TWI36G1129 NC_052237.1 + View
Tripterygium wilfordii TWI36G0984 NC_052237.1 - View
Tripterygium wilfordii TWI73G0888 NC_052232.1 + View
Vaccinium macrocarpon vmacro01565 Protein of unknown function chr1_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro02397 Protein of unknown function chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0720G0959 CM024071.1 + View
Vigna mungo VMungo1383G2602 CM024070.1 - View
Vitis vinifera GSVIVG01031244001 chr14 + View
Vitis vinifera GSVIVG01028133001 chr7 - View
Vitis vinifera GSVIVG01035006001 chr5 + View