Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004963 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.5e-110 402.9 204 100.0
CSS0048014 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 4.5e-51 205.3 121 90.9
CSS0029007 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 6.5e-50 201.4 121 89.3
CSS0048085 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 3.8e-42 175.6 123 81.3
vmacro01564 Vaccinium macrocarpon HOM05D001340 ORTHO05D005342 3.2e-41 172.6 143 70.6
Rhsim11G0095300 Rhododendron simsii HOM05D001340 ORTHO05D005342 7.2e-41 171.4 123 78.0
CSS0027854 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 9.3e-41 171.0 123 79.7
Hma1.2p1_0008F-1.1_g005585 Hydrangea macrophylla HOM05D001340 ORTHO05D005342 1.9e-38 163.3 158 59.5
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 2.5e-38 162.9 129 72.9
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 8.2e-37 157.9 137 64.2
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 1.1e-36 157.5 137 63.5
TWI36G1129 Tripterygium wilfordii HOM05D001340 ORTHO05D005342 1.1e-36 157.5 123 71.5
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 1.8e-36 156.8 125 70.4
FvH4_6g07471 Fragaria vesca HOM05D001340 ORTHO05D005342 3.1e-36 156.0 125 72.0
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 5.3e-36 155.2 129 70.5
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 1.2e-35 154.1 129 68.2
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.5e-35 153.7 129 70.5
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 1.5e-35 153.7 132 68.2
Cc02_g35070 Coffea canephora HOM05D001340 ORTHO05D005342 2.6e-35 152.9 128 68.0
Lj5g0005524 Lotus japonicus HOM05D001340 ORTHO05D005342 1.0e-34 151.0 140 62.1
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 1.3e-34 150.6 128 68.8
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 1.7e-34 150.2 122 70.5
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 3.8e-34 149.1 129 68.2
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 3.8e-34 149.1 125 69.6
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 6.5e-34 148.3 124 66.9
Peaxi162Scf00595g00424 Petunia axillaris HOM05D001340 ORTHO05D005342 1.1e-33 147.5 134 65.7
RcHm_v2.0_Chr3g0457171 Rosa chinensis HOM05D001340 ORTHO05D005342 1.1e-33 147.5 127 67.7
DCAR_029350 Daucus carota HOM05D001340 ORTHO05D005342 4.2e-33 145.6 121 66.1
Lj5g0009841 Lotus japonicus HOM05D001340 ORTHO05D005342 4.2e-33 145.6 135 63.0
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 5.5e-33 145.2 120 68.3
FAN05G0225 Fragaria x ananassa HOM05D001340 ORTHO05D005342 5.5e-33 145.2 160 57.5
Sabra13G0007100 Salix brachista HOM05D001340 ORTHO05D005342 7.2e-33 144.8 136 64.7
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 9.4e-33 144.4 114 72.8
Sabra05G0009600 Salix brachista HOM05D001340 ORTHO05D005342 9.4e-33 144.4 132 65.2
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 1.6e-32 143.7 128 64.1
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 1.6e-32 143.7 128 64.1
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 2.1e-32 143.3 131 66.4
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 3.6e-32 142.5 131 64.9
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 4.6e-32 142.1 167 53.9
arahy.Tifrunner.gnm1.ann1.CI26SV Arachis hypogaea HOM05D001340 ORTHO05D005342 6.1e-32 141.7 137 58.4
MD12G1205500 Malus domestica HOM05D001340 ORTHO05D005342 6.1e-32 141.7 125 64.8
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 7.9e-32 141.4 100 73.0
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 1.0e-31 141.0 127 63.8
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 1.0e-31 141.0 128 64.8
HanXRQChr06g0173421 Helianthus annuus HOM05D001340 ORTHO05D005342 2.3e-31 139.8 122 63.1
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 2.3e-31 139.8 145 58.6
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 8.8e-31 137.9 117 66.7
arahy.Tifrunner.gnm1.ann1.Y2Y4QF Arachis hypogaea HOM05D001340 ORTHO05D005342 1.1e-30 137.5 130 59.2
Nitab4.5_0007698g0020 Nicotiana tabacum HOM05D001340 ORTHO05D005342 1.5e-30 137.1 130 64.6
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 2.6e-30 136.3 131 61.8
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 4.3e-30 135.6 102 70.6
TAR706G0001 Trochodendron aralioides HOM05D001340 ORTHO05D005342 2.8e-29 132.9 102 69.6
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 1.1e-28 131.0 125 63.2
Cpa.g.sc48.165 Carica papaya HOM05D001340 ORTHO05D005342 1.8e-28 130.2 112 61.6
CAN.G1.66 Capsicum annuum HOM05D001340 ORTHO05D005342 4.1e-28 129.0 108 69.4
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 6.9e-28 128.3 129 58.1
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 9.1e-28 127.9 145 51.7
Hund07313 Selenicereus undatus HOM05D001340 ORTHO05D005342 9.1e-28 127.9 120 57.5
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 2.0e-27 126.7 123 56.1
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 2.0e-27 126.7 119 61.3
ATR0796G093 Amborella trichopoda HOM05D001340 ORTHO05D005342 3.4e-27 125.9 100 65.0
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 3.4e-27 125.9 127 61.4
MELO3C004179.2 Cucumis melo HOM05D001340 ORTHO05D005342 3.4e-27 125.9 119 61.3
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 4.5e-27 125.6 130 57.7
Aa31LG2G11470 Aethionema arabicum HOM05D001340 ORTHO05D005342 5.9e-27 125.2 162 49.4
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 5.9e-27 125.2 89 69.7
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 7.7e-27 124.8 90 70.0
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 7.7e-27 124.8 89 71.9
TPR.G2618 Trifolium pratense HOM05D001340 ORTHO05D005342 7.7e-27 124.8 137 53.3
PSO357G0240 Papaver somniferum HOM05D001340 ORTHO05D005342 1.0e-26 124.4 129 57.4
CiPaw.08G155200 Carya illinoinensis HOM05D001340 ORTHO05D005342 1.3e-26 124.0 134 57.5
Lsat_1_v5_gn_9_121900 Lactuca sativa HOM05D001340 ORTHO05D005342 2.2e-26 123.2 123 58.5
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 6.5e-26 121.7 142 50.7
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 8.5e-26 121.3 90 66.7
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 8.5e-26 121.3 124 56.5
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 1.9e-25 120.2 163 45.4
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 1.9e-25 120.2 90 66.7
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 2.5e-25 119.8 142 49.3
VMungo0720G0959 Vigna mungo HOM05D001340 ORTHO05D005342 9.4e-25 117.9 140 54.3
A03p66580 Brassica napus HOM05D001340 ORTHO05D005342 1.6e-24 117.1 88 67.0
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 2.1e-24 116.7 122 59.0
Phvul.007G201600 Phaseolus vulgaris HOM05D001340 ORTHO05D005342 2.1e-24 116.7 140 52.9
Sabra05G0022300 Salix brachista HOM05D001340 ORTHO05D005342 2.1e-24 116.7 66 89.4
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 2.7e-24 116.3 95 64.2
Sabra05G0010800 Salix brachista HOM05D001340 ORTHO05D005342 2.7e-24 116.3 68 85.3
QL03p013901 Quercus lobata HOM05D001340 ORTHO05D005342 3.6e-24 115.9 125 58.4
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 4.7e-24 115.5 85 68.2
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 4.7e-24 115.5 85 68.2
ClCG02G014870 Citrullus lanatus HOM05D001340 ORTHO05D005342 4.7e-24 115.5 117 59.8
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 7.9e-24 114.8 85 68.2
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 7.9e-24 114.8 85 68.2
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 1.0e-23 114.4 158 45.6
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 1.0e-23 114.4 158 45.6
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 1.4e-23 114.0 85 68.2
Manes.09G177200 Manihot esculenta HOM05D001340 ORTHO05D005342 5.2e-23 112.1 130 53.8
Duzib106G0021 Durio zibethinus HOM05D001340 ORTHO05D005342 6.7e-23 111.7 157 49.7
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 6.7e-23 111.7 76 68.4
unitig_46.g18366 Utricularia gibba HOM05D001340 ORTHO05D005342 1.5e-22 110.5 115 59.1
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 5.7e-22 108.6 137 46.0
GSVIVG01031244001 Vitis vinifera HOM05D001340 ORTHO05D002318 5.7e-22 108.6 121 57.0
Ca_10175_v3 Cicer arietinum L. HOM05D001340 ORTHO05D005342 9.7e-22 107.8 137 48.2
PSO541G4969 Papaver somniferum HOM05D001340 ORTHO05D005342 3.7e-21 105.9 69 76.8
Glyma.10G146800 Glycine max HOM05D001340 ORTHO05D005342 3.1e-20 102.8 138 48.6
Sc09g0002630 Simmondsia chinensis HOM05D001340 ORTHO05D005342 7.0e-20 101.7 130 46.9
Glyma.20G096900 Glycine max HOM05D001340 ORTHO05D005342 1.2e-19 100.9 133 50.4
Glyma.06G236676 Glycine max HOM05D000961 ORTHO05D005342 2.0e-19 100.1 140 47.1
Pp3c24_17620 Physcomitrium patens HOM05D001340 ORTHO05D005342 5.9e-19 98.6 74 67.6
COL.COLO4_05548 Corchorus olitorius HOM05D001340 ORTHO05D005342 1.0e-18 97.8 132 47.7
AUR62006743 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.7e-18 97.1 132 46.2
PGR083G1716 Punica granatum HOM05D001340 ORTHO05D005342 3.8e-18 95.9 124 49.2
Eucgr.L00263 Eucalyptus grandis HOM05D001340 ORTHO05D005342 6.5e-18 95.1 123 51.2
SMO119G0158 Selaginella moellendorffii HOM05D001340 ORTHO05D005342 6.5e-18 95.1 71 63.4
AUR62000388 Chenopodium quinoa HOM05D001340 ORTHO05D005342 2.5e-17 93.2 120 49.2
Mapoly0127s0050 Marchantia polymorpha HOM05D001340 ORTHO05D005342 2.5e-17 93.2 76 60.5
MBI19_g40070_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D005342 5.5e-17 92.0 100 52.0
Atru.chr2.201 Acer truncatum HOM05D001340 ORTHO05D005342 4.7e-16 89.0 132 45.5
EL10Ac3g04962 Beta vulgaris HOM05D001340 ORTHO05D005342 2.3e-15 86.7 84 56.0
THA.LOC104816892 Tarenaya hassleriana HOM05D001340 ORTHO05D005342 2.3e-15 86.7 136 42.6
Actinidia35521 Actinidia chinensis HOM05D001340 ORTHO05D005342 3.0e-15 86.3 75 69.3
AUR62015660 Chenopodium quinoa HOM05D001340 ORTHO05D005342 5.2e-15 85.5 69 62.3
EL10Ac1g01661 Beta vulgaris HOM05D001340 ORTHO05D005342 2.0e-14 83.6 69 59.4
AUR62015688 Chenopodium quinoa HOM05D001340 ORTHO05D005342 3.3e-14 82.8 78 52.6
Glyma.20G097300 Glycine max HOM05D001340 ORTHO05D005342 3.3e-14 82.8 93 55.9
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.4e-14 82.4 131 43.5
AUR62031620 Chenopodium quinoa HOM05D001340 ORTHO05D005342 5.7e-14 82.0 69 59.4
Haze_04058 Corylus avellana HOM05D001340 ORTHO05D005342 3.7e-13 79.3 129 41.1
Zm00001eb354870 Zea mays HOM05D001340 ORTHO05D005342 4.8e-13 79.0 101 43.6
AUR62015693 Chenopodium quinoa HOM05D001340 ORTHO05D005342 8.2e-13 78.2 66 60.6
Peaxi162Scf00750g00034 Petunia axillaris HOM05D001340 ORTHO05D005342 4.1e-12 75.9 115 51.3
Sabra05G0021500 Salix brachista HOM05D001340 ORTHO05D005342 7.0e-12 75.1 40 90.0
EL10Ac4g09460 Beta vulgaris HOM05D001340 ORTHO05D005342 1.2e-11 74.3 116 43.1
CBR_g45761 Chara braunii HOM05D001340 ORTHO05D005342 1.6e-11 73.9 71 47.9
Sabra05G0010200 Salix brachista HOM05D001340 ORTHO05D005342 3.5e-11 72.8 137 40.9
PGSC0003DMG400008293 Solanum tuberosum HOM05D001340 ORTHO05D005342 2.9e-10 69.7 64 62.5
SGA_v2.0_scaffold36G14382 Striga asiatica HOM05D001310 ORTHO05D001283 4.2e-09 65.9 73 45.2
COL.COLO4_04375 Corchorus olitorius HOM05D001310 ORTHO05D001283 4.7e-08 62.4 59 54.2
MD06G1227100 Malus domestica HOM05D001310 ORTHO05D001283 4.7e-08 62.4 73 46.6
Nitab4.5_0004556g0020 Nicotiana tabacum HOM05D001310 ORTHO05D001283 6.1e-08 62.0 72 44.4
TWI59G1224 Tripterygium wilfordii HOM05D001310 ORTHO05D001283 8.0e-08 61.6 53 56.6
Aa31LG3G17590 Aethionema arabicum HOM05D001310 ORTHO05D001283 1.0e-07 61.2 56 53.6
EL10Ac5g11565 Beta vulgaris HOM05D001310 ORTHO05D001283 1.0e-07 61.2 73 45.2
Lj5C158T11 Lonicera japonica HOM05D001310 ORTHO05D001283 1.0e-07 61.2 73 45.2
SEGI_22675 Sequoiadendron giganteum HOM05D001310 ORTHO05D001283 1.4e-07 60.8 54 53.7
Pp3c21_15890 Physcomitrium patens HOM05D001310 ORTHO05D001283 2.3e-07 60.1 65 52.3
SalBow5G0105 Salvia bowleyana HOM05D001310 ORTHO05D001283 3.0e-07 59.7 53 52.8
HanXRQChr05g0142641 Helianthus annuus HOM05D001310 ORTHO05D001283 4.0e-07 59.3 59 52.5
Sc18g0006830 Simmondsia chinensis HOM05D001310 ORTHO05D001283 4.0e-07 59.3 53 54.7
ECA233G3392 Erigeron canadensis HOM05D001310 ORTHO05D001283 5.2e-07 58.9 68 51.5
Sopen10g017560 Solanum pennellii HOM05D001310 ORTHO05D001283 6.8e-07 58.5 53 52.8
CANSAT80G2848 Cannabis sativa HOM05D001310 ORTHO05D001283 8.8e-07 58.2 53 56.6
CAN.G1.39 Capsicum annuum HOM05D001310 ORTHO05D001283 8.8e-07 58.2 53 52.8
Migut.D01540 Erythranthe guttata HOM05D001310 ORTHO05D001283 1.2e-06 57.8 77 42.9
MD14G1236500 Malus domestica HOM05D001310 ORTHO05D001283 1.2e-06 57.8 72 44.4
Sed0028182 Sechium edule HOM05D001310 ORTHO05D001283 1.2e-06 57.8 53 54.7
ClCG09G015490 Citrullus lanatus HOM05D001310 ORTHO05D001283 1.5e-06 57.4 53 54.7
CsaV3_7G006560 Cucumis sativus L. HOM05D001310 ORTHO05D001283 1.5e-06 57.4 53 54.7
Migut.B00605 Erythranthe guttata HOM05D001310 ORTHO05D001283 1.5e-06 57.4 53 50.9
Medtr8g107280 Medicago truncatula HOM05D001310 ORTHO05D001283 1.5e-06 57.4 72 41.7
Solyc03g118690.4 Solanum lycopersicum HOM05D001310 ORTHO05D001283 1.5e-06 57.4 70 45.7
HanXRQChr05g0142631 Helianthus annuus HOM05D001310 ORTHO05D023385 2.0e-06 57.0 59 50.8
Lj5A239G80 Lonicera japonica HOM05D001310 ORTHO05D001283 2.0e-06 57.0 53 50.9
Pp3c7_6470 Physcomitrium patens HOM05D001310 ORTHO05D001283 2.0e-06 57.0 65 50.8
PGSC0003DMG400005752 Solanum tuberosum HOM05D001310 ORTHO05D001283 2.0e-06 57.0 57 52.6
Lsat_1_v5_gn_8_301 Lactuca sativa HOM05D001310 ORTHO05D001283 2.6e-06 56.6 67 46.3
Solyc10g047300.2 Solanum lycopersicum HOM05D001310 ORTHO05D001283 2.6e-06 56.6 53 50.9
unitig_8.g3412 Utricularia gibba HOM05D001310 ORTHO05D001283 2.6e-06 56.6 53 50.9
Lj6g0024241 Lotus japonicus HOM05D001310 ORTHO05D001283 5.7e-06 55.5 53 50.9
Peaxi162Scf00683g00463 Petunia axillaris HOM05D001310 ORTHO05D001283 5.7e-06 55.5 155 31.0
Phvul.002G330000 Phaseolus vulgaris HOM05D001310 ORTHO05D001283 5.7e-06 55.5 59 47.5
ATR0564G362 Amborella trichopoda HOM05D001310 ORTHO05D001283 7.5e-06 55.1 73 45.2
AagrBONN_evm.TU.Sc2ySwM_340.376 Anthoceros agrestis HOM05D001340 ORTHO05D005342 7.5e-06 55.1 97 36.1
Nitab4.5_0003401g0010 Nicotiana tabacum HOM05D001310 ORTHO05D001283 7.5e-06 55.1 66 45.5
VMungo0251G0933 Vigna mungo HOM05D001310 ORTHO05D001283 7.5e-06 55.1 77 40.3


User provided reference genes

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