Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0029078 hypothetical protein, partial [Camellia sinensis] Chr2 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG9G17300 LG-9 + View
Acer truncatum Atru.chr1.1773 chr1 + View
Actinidia chinensis Actinidia36360 Lachesis_group4 + View
Actinidia chinensis Actinidia17652 Lachesis_group21 + View
Actinidia chinensis Actinidia15920 Lachesis_group11 + View
Arabidopsis lyrata AL2G24580 scaffold_2 - View
Arabidopsis lyrata AL7G52890 scaffold_7 + View
Arabidopsis lyrata AL7G46770 scaffold_7 - View
Avicennia marina MSTRG.23610 ScioBoG_3895_HRSCAF_3912 + View
Avicennia marina MSTRG.3531 ScioBoG_102836_HRSCAF_103072 - View
Amaranthus hybridus Ah.10g037900 E3 ubiquitin-protein ligase SINA-like 10 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase SINA-like 10) (Seven in absentia-like protein 10) AmaHy_arrow1_Scaffold_10 + View
Arabidopsis thaliana AT1G66610 TRAF-like superfamily protein TRAF-like superfamily protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C zinc ion binding%3B INVOLVED IN: multicellular organismal development%2C protein ubiquitination%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: nucleus%3B EXPRESSED IN: sperm cell%3B CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974)%2C Seven-in-absentia protein%2C TRAF-like domain (InterPro:IPR018121)%2C Zinc finger%2C SIAH-type (InterPro:IPR013010)%2C Seven In Absentia Homolog-type (InterPro:IPR013323)%2C Seven-in-absentia protein%2C sina (InterPro:IPR004162)%3B BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT1G66620.1)%3B Has 888 Blast hits to 792 proteins in 98 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 348%3B Fungi - 3%3B Plants - 515%3B Viruses - 0%3B Other Eukaryotes - 22 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT5G37870 Protein with RING/U-box and TRAF-like domain Protein with RING/U-box and TRAF-like domains%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C zinc ion binding%3B INVOLVED IN: multicellular organismal development%2C ubiquitin-dependent protein catabolic process%2C protein ubiquitination%3B LOCATED IN: nucleus%2C intracellular%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C TRAF-like (InterPro:IPR008974)%2C Seven-in-absentia protein%2C TRAF-like domain (InterPro:IPR018121)%2C Zinc finger%2C SIAH-type (InterPro:IPR013010)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Seven In Absentia Homolog-type (InterPro:IPR013323)%2C Seven-in-absentia protein%2C sina (InterPro:IPR004162)%3B BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT5G37910.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaC08g46046 ChrC08 + View
Brassica carinata BcaC08g44353 ChrC08 - View
Brassica carinata BcaC02g09616 ChrC02 + View
Brassica carinata BcaB02g08022 ChrB02 + View
Brassica carinata BcaB03g15257 ChrB03 + View
Brassica napus A07p33480 A07 - View
Brassica napus C06p17960 C06 - View
Brassica napus C06p39870 C06 - View
Brassica napus A04p11030 A04 + View
Brassica oleracea BolC6t36992H C6 - View
Brassica oleracea BolC6t39075H C6 - View
Brassica rapa BraA07t30974Z A07 - View
Beta vulgaris EL10Ac2g04498 PTHR10315:SF43 - E3 UBIQUITIN-PROTEIN LIGASE Chr2_EL10_PGA_scaffold6 - View
Corylus avellana Haze_14210 Similar to At5g37930: E3 ubiquitin-protein ligase SINA-like 10 (Arabidopsis thaliana OX%3D3702) 5 + View
Coffea canephora Cc07_g08260 Putative E3 ubiquitin-protein ligase SINA-like 10 chr7 - View
Citrus clementina Ciclev10012175m.g scaffold_6 - View
Ceratophyllum demersum CDE06G1418 4 + View
Carpinus fangiana Cfa007860 Cfa03 - View
Cardamine hirsuta CARHR058600 Ubiquitin-protein ligase, putative Chr2 - View
Cardamine hirsuta CARHR214690 E3 ubiquitin-protein ligase SINA-like 5 Chr7 + View
Carya illinoinensis CiPaw.03G067600 PTHR10315//PTHR10315:SF43 - SEVEN IN ABSENTIA HOMOLOG // E3 UBIQUITIN-PROTEIN LIGASE Chr03 + View
Citrullus lanatus ClCG05G010790 Ubiquitin-protein ligase, putative CG_Chr05 + View
Carica papaya Cpa.g.sc116.13 supercontig_116 + View
Chenopodium quinoa AUR62023206 At5g37930: E3 ubiquitin-protein ligase SINA-like 10 C_Quinoa_Scaffold_1189 - View
Capsella rubella Carub.0002s1264 K04506 - E3 ubiquitin-protein ligase SIAH1 (SIAH1) scaffold_2 - View
Capsella rubella Carub.0005s1229 K04506 - E3 ubiquitin-protein ligase SIAH1 (SIAH1) scaffold_5 - View
Daucus carota DCAR_025880 hypothetical protein DCARv2_Chr7 - View
Davidia involucrata Dinv19002 GWHABJS00000014 + View
Durio zibethinus Duzib138G1453 NW_019167893.1 + View
Erigeron canadensis ECA232G1488 Conyza_canadensis_scaffold:2 - View
Eucalyptus grandis Eucgr.J01542 Chr10 + View
Erythranthe guttata Migut.L00477 scaffold_12 - View
Erythranthe guttata Migut.H00260 scaffold_8 + View
Eutrema salsugineum Thhalv10018712m.g K04506 - E3 ubiquitin-protein ligase SIAH1 (SIAH1) scaffold_9 - View
Eutrema salsugineum Thhalv10028190m.g K04506 - E3 ubiquitin-protein ligase SIAH1 (SIAH1) scaffold_14 + View
Fragaria x ananassa FAN26G2380 K04506 - E3 ubiquitin-protein ligase SIAH1 (SIAH1) Fvb1-2 + View
Hydrangea macrophylla Hma1.2p1_0500F.1_g166890 Hma1.2p1_0500F.1 - View
Lactuca sativa Lsat_1_v5_gn_4_155121 PTHR10315:SF43 - E3 UBIQUITIN-PROTEIN LIGASE Lsat_1_v8_lg_4 + View
Magnolia biondii MBI10_g07288_MAGBIO AED:0.01 Chr10 - View
Malus domestica MD09G1260200 Protein with RING/U-box and TRAF-like domains Chr09 + View
Manihot esculenta Manes.02G074100 Chromosome02 + View
Olea europaea Oeu047424.1 chr18 - View
Olea europaea Oeu000896.1 scaffold1019 + View
Oryza sativa ssp. japonica Os01g0121900 Seven-in-absentia protein, sina domain containing protein. chr01 + View
Punica granatum PGR042G2064 NC_045130.1 - View
Prunus persica Prupe.3G152000 PTHR10315:SF43 - E3 UBIQUITIN-PROTEIN LIGASE Pp03 + View
Papaver somniferum PSO017G0644 NC_039362.1 - View
Papaver somniferum PSO478G2442 NC_039361.1 + View
Populus trichocarpa Potri.004G091900 PTHR10315//PTHR10315:SF43 - SEVEN IN ABSENTIA HOMOLOG // E3 UBIQUITIN-PROTEIN LIGASE Chr04 - View
Populus trichocarpa Potri.017G122800 PTHR10315//PTHR10315:SF43 - SEVEN IN ABSENTIA HOMOLOG // E3 UBIQUITIN-PROTEIN LIGASE Chr17 + View
Rosa chinensis RcHm_v2.0_Chr3g0493571 RcHm_v2.0_Chr3 - View
Rhododendron simsii Rhsim08G0084700 chr08 + View
Rhododendron simsii Rhsim10G0078700 chr10 + View
Simmondsia chinensis Sc10g0000920 GWHAASQ00000010 - View
Simmondsia chinensis Sc11g0008570 GWHAASQ00000011 - View
Sechium edule Sed0014656 LG06 + View
Sechium edule Sed0012578 LG05 - View
Sechium edule Sed0008308 LG03 - View
Schrenkiella parvula Sp7g04030 K04506 - E3 ubiquitin-protein ligase SIAH1 (SIAH1) ch7-1 + View
Schrenkiella parvula Sp5g21600 K04506 - E3 ubiquitin-protein ligase SIAH1 (SIAH1) ch5-5 - View
Solanum pennellii Sopen03g007330 Protein with RING/U-box and TRAF-like domains | FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding | INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination | LOCATED IN: intracellular, nucleus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like , TRAF-like , Seven-in-absentia protein, TRAF-like domain , Zinc finger, SIAH-type , Seven In Absentia Homolog-type , Seven-in-absentia protein, sina | BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains Spenn-ch03 + View
Solanum tuberosum PGSC0003DMG401016693 Ubiquitin-protein ligase ST4.03ch03 + View
Trochodendron aralioides TAR629G0648 group0 + View
Theobroma cacao Thecc.04G123400 RING/U-box and TRAF-like domains Chromosome_4 - View
Tarenaya hassleriana THA.LOC104822444 LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SINA-like 7 NW_010960187.1 - View
Vaccinium macrocarpon vmacro18059 Similar to At5g37930: E3 ubiquitin-protein ligase SINA-like 10 (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01030893001 chr14 - View