Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0009761 PREDICTED: gamma-tubulin complex component 4 [Vitis vinifera] Chr11 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G2040 LG-5 + View
Aethionema arabicum Aa31LG1G28930 LG-1 + View
Acer truncatum Atru.chr5.1139 chr5 + View
Actinidia chinensis Actinidia24357 Lachesis_group24 - View
Actinidia chinensis Actinidia01488 Lachesis_group19 - View
Actinidia chinensis Actinidia24819 Lachesis_group15 - View
Arabidopsis lyrata AL4G47170 scaffold_4 + View
Arabidopsis lyrata AL6G50720 scaffold_6 - View
Avicennia marina MSTRG.21636 ScioBoG_26769_HRSCAF_26899 - View
Amaranthus hybridus Ah.15g093160 Gamma-tubulin complex component 4 (AtGCP4) (GCP-4) AmaHy_arrow1_Scaffold_15 + View
Aquilegia oxysepala Aqoxy2G02932 CHR02 + View
Aquilegia oxysepala Aqoxy5G00759 CHR05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.FAXC2W K14567 - U3 small nucleolar RNA-associated protein 14 (UTP14) arahy.Tifrunner.gnm1.Arahy.16 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.DCE7TU K14567 - U3 small nucleolar RNA-associated protein 14 (UTP14) arahy.Tifrunner.gnm1.Arahy.06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.1X1TH0 PTHR11455:SF2 - BLUE-LIGHT PHOTORECEPTOR PHR2 arahy.Tifrunner.gnm1.Arahy.02 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.5E2DVT PTHR11455:SF2 - BLUE-LIGHT PHOTORECEPTOR PHR2 arahy.Tifrunner.gnm1.Arahy.12 - View
Arabidopsis thaliana AT4G02400 U3 ribonucleoprotein (Utp) family protein U3 ribonucleoprotein (Utp) family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: rRNA processing%3B LOCATED IN: small-subunit processome%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Small-subunit processome%2C Utp14 (InterPro:IPR006709)%3B BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.2)%3B Has 7468 Blast hits to 4514 proteins in 366 species: Archae - 14%3B Bacteria - 554%3B Metazoa - 2650%3B Fungi - 816%3B Plants - 392%3B Viruses - 146%3B Other Eukaryotes - 2896 (source: NCBI BLink). Chr4 + View
Arabidopsis thaliana AT2G47590 photolyase/blue-light receptor 2 photolyase/blue light photoreceptor PHR2 (PHR2) mRNA%2C photolyase/blue-light receptor 2 (PHR2)%3B FUNCTIONS IN: DNA photolyase activity%3B INVOLVED IN: DNA repair%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C DNA photolyase%2C N-terminal (InterPro:IPR006050)%2C DNA photolyase%2C FAD-binding/Cryptochrome%2C C-terminal (InterPro:IPR005101)%3B BEST Arabidopsis thaliana protein match is: cryptochrome 3 (TAIR:AT5G24850.1)%3B Has 4854 Blast hits to 4851 proteins in 1205 species: Archae - 82%3B Bacteria - 2283%3B Metazoa - 348%3B Fungi - 105%3B Plants - 417%3B Viruses - 0%3B Other Eukaryotes - 1619 (source: NCBI BLink). Chr2 + View
Brassica carinata BcaB05g23626 ChrB05 + View
Brassica carinata BcaC03g16120 ChrC03 + View
Brassica carinata BcaB02g08760 ChrB02 - View
Brassica carinata BcaB01g02051 ChrB01 - View
Brassica carinata BcaNung04048 Contig1394 + View
Brassica napus C04p00260 C04 - View
Brassica napus A02p24660 A02 + View
Brassica napus A05p00340 A05 - View
Brassica napus C02p38920 C02 + View
Brassica napus C09p01900 C09 + View
Brassica napus A09p01860 A09 + View
Brassica oleracea BolC9t53125H C9 + View
Brassica oleracea BolC2t09905H C2 + View
Brassica oleracea BolC4t21669H C4 - View
Brassica rapa BraA05t19032Z A05 - View
Brassica rapa BraA02t07457Z A02 + View
Capsicum annuum CAN.G472.9 PGAv.1.6.scaffold472 - View
Cannabis sativa CANSAT25G3636 NC_044370.1 - View
Cicer arietinum L. Ca_09177_v3 Ca_LG3_v3 - View
Cicer arietinum L. Ca_10329_v3 Ca_LG4_v3 + View
Corylus avellana Haze_04943 Similar to PHR2: Blue-light photoreceptor PHR2 (Arabidopsis thaliana OX%3D3702) 2 - View
Coffea canephora Cc01_g20890 Blue-light photoreceptor PHR2 chr1 - View
Citrus clementina Ciclev10020039m.g scaffold_3 - View
Ceratophyllum demersum CDE01G0802 11 - View
Ceratophyllum demersum CDE12G0252 10 - View
Carpinus fangiana Cfa005904 Cfa02 + View
Cardamine hirsuta CARHR142990 Cryptochrome, DASH family Chr4 + View
Cardamine hirsuta CARHR250590 U3 small nucleolar RNA-associated protein, putative Chr8 + View
Carya illinoinensis CiPaw.07G109500 4.1.99.13 - (6-4)DNA photolyase / DNA photolyase Chr07 - View
Carya illinoinensis CiPaw.08G094700 K16571 - gamma-tubulin complex component 4 (TUBGCP4, GCP4) Chr08 + View
Citrullus lanatus ClCG09G005830 U3 small nucleolar RNA-associated protein, putative CG_Chr09 + View
Cucumis melo MELO3C015997.2 U3 small nucleolar RNA-associated protein 14 chr01 + View
Corchorus olitorius COL.COLO4_23340 hypothetical protein AWUE01018185.1 + View
Carica papaya Cpa.g.sc9.255 supercontig_9 + View
Chenopodium quinoa AUR62025574 GCP4: Gamma-tubulin complex component 4 C_Quinoa_Scaffold_2773 + View
Chenopodium quinoa AUR62008668 PHR2: Blue-light photoreceptor PHR2 C_Quinoa_Scaffold_1710 - View
Capsella rubella Carub.0006s3476 K14567 - U3 small nucleolar RNA-associated protein 14 (UTP14) scaffold_6 - View
Capsella rubella Carub.0004s3032 PTHR11455:SF2 - BLUE-LIGHT PHOTORECEPTOR PHR2 scaffold_4 + View
Cucumis sativus L. CsaV3_7G029300 blue-light photoreceptor PHR2 chr7 - View
Daucus carota DCAR_002839 hypothetical protein DCARv2_Chr1 - View
Davidia involucrata Dinv19685 GWHABJS00000007 + View
Davidia involucrata Dinv33056 GWHABJS00000010 - View
Durio zibethinus Duzib133G0301 NW_019167938.1 + View
Durio zibethinus Duzib138G0681 NW_019167893.1 + View
Erigeron canadensis ECA247G0418 Conyza_canadensis_scaffold:7 - View
Erigeron canadensis ECA248G2553 Conyza_canadensis_scaffold:9 - View
Erigeron canadensis ECA236G1870 Conyza_canadensis_scaffold:3 - View
Eucalyptus grandis Eucgr.K03489 Chr11 - View
Eucalyptus grandis Eucgr.H01108 Chr08 + View
Erythranthe guttata Migut.D00148 scaffold_4 + View
Eutrema salsugineum Thhalv10001442m.g 4.1.99.13 - (6-4)DNA photolyase / DNA photolyase scaffold_22 + View
Eutrema salsugineum Thhalv10028424m.g K14567 - U3 small nucleolar RNA-associated protein 14 (UTP14) scaffold_3 + View
Fragaria x ananassa FAN15G0942 4.1.99.13 - (6-4)DNA photolyase / DNA photolyase Fvb2-4 - View
Fragaria x ananassa FAN24G3174 PTHR19302:SF27 - GAMMA-TUBULIN COMPLEX COMPONENT 4 Fvb2-2 + View
Fragaria x ananassa FAN27G3418 4.1.99.13 - (6-4)DNA photolyase / DNA photolyase Fvb2-1 - View
Fragaria x ananassa FAN20G0148 PF00875//PF03441//PF04130//PF04615 - DNA photolyase (DNA_photolyase) // FAD binding domain of DNA photolyase (FAD_binding_7) // Spc97 / Spc98 family (Spc97_Spc98) // Utp14 protein (Utp14) Fvb2-3 - View
Fragaria vesca FvH4_2g25790 PTHR11455//PTHR11455:SF2 - CRYPTOCHROME // BLUE-LIGHT PHOTORECEPTOR PHR2 Fvb2 - View
Gossypium hirsutum Gohir.A11G114100 K16571 - gamma-tubulin complex component 4 (TUBGCP4, GCP4) A11 + View
Gossypium hirsutum Gohir.D12G133800 K14567 - U3 small nucleolar RNA-associated protein 14 (UTP14) D12 + View
Gossypium hirsutum Gohir.D11G119200 PTHR19302:SF27 - GAMMA-TUBULIN COMPLEX COMPONENT 4 D11 + View
Gossypium hirsutum Gohir.A12G130000 K14567 - U3 small nucleolar RNA-associated protein 14 (UTP14) A12 + View
Gossypium hirsutum Gohir.A08G076500 PTHR19302:SF27 - GAMMA-TUBULIN COMPLEX COMPONENT 4 A08 - View
Gossypium hirsutum Gohir.D08G086000 PTHR19302:SF27 - GAMMA-TUBULIN COMPLEX COMPONENT 4 D08 - View
Glycine max Glyma.03G214900 K14567 - U3 small nucleolar RNA-associated protein 14 (UTP14) Gm03 - View
Glycine max Glyma.19G211500 K14567 - U3 small nucleolar RNA-associated protein 14 (UTP14) Gm19 - View
Glycine max Glyma.02G017400 K16571 - gamma-tubulin complex component 4 (TUBGCP4, GCP4) Gm02 + View
Glycine max Glyma.10G017800 K16571 - gamma-tubulin complex component 4 (TUBGCP4, GCP4) Gm10 + View
Gossypium raimondii Gorai.004G090500 Chr04 - View
Gossypium raimondii Gorai.007G127700 Chr07 + View
Gossypium raimondii Gorai.008G144800 Chr08 + View
Helianthus annuus HanXRQChr15g0465641 Putative DNA photolyase class 2 HanXRQChr15 + View
Hydrangea macrophylla Hma1.2p1_0491F.1_g164650 Hma1.2p1_0491F.1 - View
Hydrangea macrophylla Hma1.2p1_0494F.1_g165210 Hma1.2p1_0494F.1 - View
Hydrangea macrophylla Hma1.2p1_1471F.1_g285620 Hma1.2p1_1471F.1 + View
Lupinus albus Lalb_Chr02g0146381 4.1.99.13 - (6-4)DNA photolyase / DNA photolyase Lalb_Chr02 - View
Lupinus albus Lalb_Chr18g0046951 K14567 - U3 small nucleolar RNA-associated protein 14 (UTP14) Lalb_Chr18 + View
Lupinus albus Lalb_Chr21g0309241 K16571 - gamma-tubulin complex component 4 (TUBGCP4, GCP4) Lalb_Chr21 - View
Lotus japonicus Lj5g0001440 PTHR11455//PTHR11455:SF2 - CRYPTOCHROME // BLUE-LIGHT PHOTORECEPTOR PHR2 chr5 - View
Lotus japonicus Lj1g0000333 K14567 - U3 small nucleolar RNA-associated protein 14 (UTP14) chr1 - View
Lonicera japonica Lj1A24T62 GWHAAZE00000001 + View
Lonicera japonica Lj2A1195G26 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_9_5381 Lsat_1_v8_lg_9 - View
Lactuca sativa Lsat_1_v5_gn_8_164240 K16571 - gamma-tubulin complex component 4 (TUBGCP4, GCP4) Lsat_1_v8_lg_8 - View
Lactuca sativa Lsat_1_v5_gn_9_5701 4.1.99.13 - (6-4)DNA photolyase / DNA photolyase Lsat_1_v8_lg_9 + View
Magnolia biondii MBI19_g43566_MAGBIO AED:0.64 Chr19 + View
Magnolia biondii MBI18_g06032_MAGBIO AED:0.18 Chr18 + View
Malus domestica MD03G1288700 photolyase/blue-light receptor 2 Chr03 - View
Malus domestica MD11G1308900 U3 ribonucleoprotein (Utp) family protein Chr11 + View
Manihot esculenta Manes.05G061800 Chromosome05 + View
Manihot esculenta Manes.01G219700 Chromosome01 - View
Medicago truncatula Medtr1g088410 tubulin gamma complex-associated protein chr1 + View
Medicago truncatula Medtr7g108730 U3 small nucleolar RNA-associated-like protein chr7 - View
Nelumbo nucifera Nn3g21501 chr3 - View
Nicotiana tabacum Nitab4.5_0001879g0150 DNA photolyase, FAD-binding/Cryptochrome, C-terminal, DNA photolyase, N-terminal, Rossmann-like alpha/beta/alpha sandwich fold Nitab4.5_0001879 - View
Olea europaea Oeu054121.1 chr20 - View
Olea europaea Oeu046675.1 chr16 + View
Oryza sativa ssp. japonica Os03g0343300 Small-subunit processome, Utp14 domain containing protein. chr03 + View
Oryza sativa ssp. japonica Os05g0154500 Spc97/Spc98 family protein. chr05 - View
Petunia axillaris Peaxi162Scf00001g42030 Gamma-tubulin complex component 4 homolog Peaxi162Scf00001 + View
Punica granatum PGR003G0015 NW_022204339.1 + View
Prunus persica Prupe.8G262000 4.1.99.13 - (6-4)DNA photolyase / DNA photolyase Pp08 - View
Pisum sativum Psat6g165160 Spc97 / Spc98 family chr6LG2 + View
Papaver somniferum PSO210G6973 NC_039359.1 - View
Papaver somniferum PSO832G1198 NC_039367.1 + View
Populus trichocarpa Potri.002G203700 K14567 - U3 small nucleolar RNA-associated protein 14 (UTP14) Chr02 + View
Populus trichocarpa Potri.014G128300 K14567 - U3 small nucleolar RNA-associated protein 14 (UTP14) Chr14 + View
Phaseolus vulgaris Phvul.001G207700 K14567 - U3 small nucleolar RNA-associated protein 14 (UTP14) Chr01 - View
Quercus lobata QL12p028379 12 + View
Rosa chinensis RcHm_v2.0_Chr6g0294101 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim01G0285600 chr01 - View
Rhododendron simsii Rhsim13G0009800 chr13 + View
Striga asiatica SGA_v2.0_scaffold1G00361 scaffold1 + View
Salvia bowleyana SalBow3G1763 GWHASIU00000006 - View
Salix brachista Sabra02G0155200 GWHAAZH00000002 - View
Salix brachista Sabra14G0095400 GWHAAZH00000014 + View
Simmondsia chinensis Sc05g0003770 GWHAASQ00000005 - View
Sechium edule Sed0027832 LG07 + View
Sechium edule Sed0003394 LG09 - View
Sechium edule Sed0026689 LG05 + View
Sapria himalayana SHI15144 scaffold17_11767850 + View
Solanum lycopersicum Solyc09g075180.3 DNA photolyase (AHRD V3.3 *** A0A200PWN3_9MAGN) SL4.0ch09 - View
Schrenkiella parvula Sp4g29520 PTHR11455:SF2 - BLUE-LIGHT PHOTORECEPTOR PHR2 ch4-6 + View
Schrenkiella parvula Sp6g02280 K14567 - U3 small nucleolar RNA-associated protein 14 (UTP14) ch6-1 + View
Solanum pennellii Sopen09g030000 photolyase/blue light photoreceptor PHR2 (PHR2) mRNA, | photolyase/blue-light receptor 2 (PHR2) | FUNCTIONS IN: DNA photolyase activity | INVOLVED IN: DNA repair | LOCATED IN: cellular_component unknown | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold , DNA photolyase, N-terminal , DNA photolyase, FAD-binding/Cryptochrome, C-terminal | BEST Arabidopsis thaliana protein match is: cryptochrome 3 Spenn-ch09 - View
Solanum tuberosum PGSC0003DMG400031812 DNA photolyase ST4.03ch09 - View
Selenicereus undatus Hund05431 Scaffold_19641 - View
Selenicereus undatus Hund18174 Scaffold_33675 - View
Trochodendron aralioides TAR362G0476 group17 + View
Trochodendron aralioides TAR365G0367 group16 - View
Theobroma cacao Thecc.01G301200 Photolyase/blue-light receptor 2 Chromosome_1 - View
Tarenaya hassleriana THA.LOC104802176 gamma-tubulin complex component 4 NW_010970490.1 - View
Tarenaya hassleriana THA.LOC104817490 blue-light photoreceptor PHR2 NW_010965946.1 + View
Tarenaya hassleriana THA.LOC104801276 uncharacterized protein C57A7.06 NW_010969548.1 - View
Trifolium pratense TPR.G9606 Tp57577_TGAC_v2_LG6 + View
Trifolium pratense TPR.G33956 Tp57577_TGAC_v2_LG1 + View
Tripterygium wilfordii TWI14G0456 NC_052249.1 + View
Tripterygium wilfordii TWI59G0706 NC_052248.1 + View
Vaccinium macrocarpon vmacro15153 Similar to SPAC57A7.06: Uncharacterized protein C57A7.06 (Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX%3D284812) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro02446 Similar to GCP4: Gamma-tubulin complex component 4 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro15017 Similar to PHR2: Blue-light photoreceptor PHR2 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1383G0715 CM024070.1 - View
Vigna mungo VMungo0720G2512 CM024071.1 - View
Vitis vinifera GSVIVG01028024001 chr7 - View
Zea mays Zm00001eb394950 Zm00001e038222 Blue-light photoreceptor PHR2 9 - View