Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0005806 PREDICTED: cleavage and polyadenylation specificity factor subunit 6 isoform X1 [Vitis vinifera] Chr10 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G6240 LG-2 + View
Acer truncatum Atru.chr11.2190 chr11 + View
Actinidia chinensis Actinidia01371 Lachesis_group10 - View
Actinidia chinensis Actinidia37458 Lachesis_group16 - View
Actinidia chinensis Actinidia08113 Lachesis_group15 + View
Arabidopsis lyrata AL1G24870 scaffold_1 + View
Avicennia marina MSTRG.546 ScioBoG_102831_HRSCAF_103044 - View
Amaranthus hybridus Ah.03g133540 Cleavage and polyadenylation specificity factor subunit CG7185 AmaHy_arrow1_Scaffold_3 + View
Aquilegia oxysepala Aqoxy5G03629 CHR05 - View
Arabidopsis thaliana AT1G13190 RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G55670.1)%3B Has 32447 Blast hits to 17825 proteins in 1064 species: Archae - 7%3B Bacteria - 12227%3B Metazoa - 10368%3B Fungi - 2543%3B Plants - 3608%3B Viruses - 174%3B Other Eukaryotes - 3520 (source: NCBI BLink). Chr1 + View
Amborella trichopoda ATR0824G184 AmTr_v1.0_scaffold00049 + View
Brassica carinata BcaC05g25074 ChrC05 - View
Brassica napus A06p08550 A06 - View
Brassica napus C05p10160 C05 - View
Brassica rapa BraA06t24051Z A06 - View
Cannabis sativa CANSAT01G0319 NC_044373.1 + View
Corylus avellana Haze_12296 Similar to Glycine-rich RNA-binding protein GRP1A (Sinapis alba OX%3D3728) 9 + View
Coffea canephora Cc11_g16180 Putative RNA-binding (RRM/RBD/RNP motifs) family protein chr11 + View
Citrus clementina Ciclev10030915m.g scaffold_4 - View
Ceratophyllum demersum CDE09G0816 7 - View
Carpinus fangiana Cfa009263 Cfa03 + View
Cardamine hirsuta CARHR013560 RNA binding protein, putative Chr1 + View
Carya illinoinensis CiPaw.05G176500 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) Chr05 - View
Carica papaya Cpa.g.sc33.86 supercontig_33 + View
Chenopodium quinoa AUR62024211 Protein of unknown function C_Quinoa_Scaffold_4119 - View
Chenopodium quinoa AUR62005526 Protein of unknown function C_Quinoa_Scaffold_1214 + View
Capsella rubella Carub.0001s1292 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) scaffold_1 + View
Daucus carota DCAR_007031 hypothetical protein DCARv2_Chr2 - View
Daucus carota DCAR_031172 hypothetical protein DCARv2_Chr9 + View
Davidia involucrata Dinv11030 GWHABJS00000008 + View
Davidia involucrata Dinv14758 GWHABJS00000018 - View
Erigeron canadensis ECA234G1912 Conyza_canadensis_scaffold:4 - View
Erythranthe guttata Migut.K00637 scaffold_11 + View
Eutrema salsugineum Thhalv10007191m.g K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) scaffold_5 - View
Fragaria x ananassa FAN17G2317 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) Fvb4-2 + View
Fragaria x ananassa FAN22G0845 PTHR24012:SF425 - F3F19.21 PROTEIN Fvb4-1 - View
Fragaria x ananassa FAN07G1142 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) Fvb4-4 + View
Fragaria x ananassa FAN12G2158 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) Fvb4-3 + View
Fragaria vesca FvH4_4g25160 KOG0121//KOG0226 - Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) // RNA-binding proteins Fvb4 - View
Gossypium hirsutum Gohir.A04G137400 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) A04 + View
Gossypium hirsutum Gohir.D04G180600 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) D04 + View
Gossypium raimondii Gorai.012G173800 Chr12 + View
Lonicera japonica Lj6P817T17 GWHAAZE00000006 + View
Lactuca sativa Lsat_1_v5_gn_4_2781 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) Lsat_1_v8_lg_4 - View
Malus domestica MD13G1106000 RNA-binding (RRM/RBD/RNP motifs) family protein Chr13 + View
Malus domestica MD16G1106200 RNA-binding (RRM/RBD/RNP motifs) family protein Chr16 + View
Manihot esculenta Manes.13G019800 Chromosome13 - View
Nicotiana tabacum Nitab4.5_0000041g0110 Unknown Nitab4.5_0000041 + View
Petunia axillaris Peaxi162Scf00128g00625 RNA-binding (RRM/RBD/RNP motifs) family protein Peaxi162Scf00128 + View
Prunus persica Prupe.1G240200 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) Pp01 - View
Populus trichocarpa Potri.010G051600 PTHR24012//PTHR24012:SF425 - FAMILY NOT NAMED // F3F19.21 PROTEIN Chr10 + View
Populus trichocarpa Potri.008G182500 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) Chr08 - View
Quercus lobata QL03p056073 3 - View
Rosa chinensis RcHm_v2.0_Chr4g0432361 RcHm_v2.0_Chr4 - View
Rhododendron simsii Rhsim12G0038100 chr12 - View
Striga asiatica SGA_v2.0_scaffold100G29588 scaffold100 - View
Salvia bowleyana SalBow2G0913 GWHASIU00000007 + View
Salix brachista Sabra08G0139000 GWHAAZH00000008 - View
Salix brachista Sabra10G0018500 GWHAAZH00000010 - View
Simmondsia chinensis Sc04g0009750 GWHAASQ00000004 + View
Solanum lycopersicum Solyc05g013970.4 RNA recognition motif domain (AHRD V3.3 *-* A0A200R4F7_9MAGN) SL4.0ch05 + View
Schrenkiella parvula Sp1g11710 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) ch1-1 + View
Solanum pennellii Sopen05g008900 RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein Spenn-ch05 + View
Solanum tuberosum PGSC0003DMG400010778 RNA binding protein ST4.03ch05 + View
Trochodendron aralioides TAR629G1850 group0 - View
Trochodendron aralioides TAR622G0183 group8 + View
Trochodendron aralioides TAR371G0391 group13 + View
Theobroma cacao Thecc.02G267400 RNA-binding family protein Chromosome_2 + View
Tarenaya hassleriana THA.LOC104824017 cleavage and polyadenylation specificity factor subunit CG7185-like NW_010966881.1 + View
Utricularia gibba unitig_8.g2915 unitig_8 - View
Vitis vinifera GSVIVG01000588001 chr1 - View