Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0020609 PREDICTED: U6 snRNA-associated Sm-like protein LSm1 [Vitis vinifera] Chr15 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G3860 LG-7 + View
Acer truncatum Atru.chr1.4067 chr1 + View
Acer truncatum Atru.chr7.1732 chr7 + View
Actinidia chinensis Actinidia26017 Lachesis_group2 - View
Actinidia chinensis Actinidia32199 Lachesis_group27 + View
Arabidopsis lyrata AL1G31700 scaffold_1 + View
Aquilegia oxysepala Aqoxy7G01015 CHR07 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.HFG4EH PTHR15588//PTHR15588:SF10 - LSM1 // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.5QET20 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) arahy.Tifrunner.gnm1.Arahy.13 + View
Arabidopsis thaliana AT1G19120 Small nuclear ribonucleoprotein family protein Small nuclear ribonucleoprotein family protein%3B CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G14080.2)%3B Has 1149 Blast hits to 1149 proteins in 232 species: Archae - 65%3B Bacteria - 0%3B Metazoa - 426%3B Fungi - 329%3B Plants - 203%3B Viruses - 0%3B Other Eukaryotes - 126 (source: NCBI BLink). Chr1 + View
Amborella trichopoda ATR0006G072 AmTr_v1.0_scaffold00131 + View
Brassica carinata BcaC07g41272 ChrC07 - View
Brassica carinata BcaB07g31926 ChrB07 + View
Brassica carinata BcaB03g14463 ChrB03 - View
Brassica napus C08p42780 C08 - View
Brassica napus A09p59500 A09 - View
Brassica oleracea BolC8t51834H C8 - View
Beta vulgaris EL10Ac7g16437 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Chr7_EL10_PGA_scaffold5 + View
Capsicum annuum CAN.G862.46 PGAv.1.6.scaffold862 - View
Capsicum annuum CAN.G1661.19 PGAv.1.6.scaffold1661 + View
Cannabis sativa CANSAT56G0700 NC_044371.1 + View
Cannabis sativa CANSAT56G3780 NC_044371.1 + View
Cannabis sativa CANSAT56G2457 NC_044371.1 + View
Cicer arietinum L. Ca_23402_v3 Ca_LG7_v3 + View
Coffea canephora Cc04_g01120 Small nuclear ribonucleoprotein family protein chr4 - View
Coffea canephora Cc06_g12440 Putative Small nuclear ribonucleoprotein family protein chr6 + View
Citrus clementina Ciclev10026767m.g scaffold_7 + View
Citrus clementina Ciclev10009897m.g scaffold_1 + View
Carpinus fangiana Cfa003516 Cfa01 - View
Carpinus fangiana Cfa002968 Cfa01 - View
Cardamine hirsuta CARHR019720 Small nuclear ribonucleoprotein LSM1 Chr1 + View
Carya illinoinensis CiPaw.02G134200 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Chr02 - View
Carya illinoinensis CiPaw.03G203900 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Chr03 - View
Carya illinoinensis CiPaw.01G216600 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Chr01 - View
Carica papaya Cpa.g.sc25.142 supercontig_25 + View
Chenopodium quinoa AUR62009915 Protein of unknown function C_Quinoa_Scaffold_2493 + View
Chenopodium quinoa AUR62001450 LSM1B: Sm-like protein LSM1B C_Quinoa_Scaffold_2716 - View
Capsella rubella Carub.0001s1875 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) scaffold_1 + View
Cucumis sativus L. CsaV3_7G034290 Sm-like protein chr7 - View
Davidia involucrata Dinv20414 GWHABJS00000019 + View
Durio zibethinus Duzib150G1338 NW_019167882.1 - View
Durio zibethinus Duzib187G1652 NW_019167860.1 + View
Durio zibethinus Duzib235G0799 NW_019167982.1 + View
Durio zibethinus Duzib160G0276 NW_019168015.1 + View
Erythranthe guttata Migut.I01097 scaffold_9 + View
Eutrema salsugineum Thhalv10009105m.g K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) scaffold_5 - View
Fragaria x ananassa FAN23G2808 PTHR15588//PTHR15588:SF10 - LSM1 // SUBFAMILY NOT NAMED Fvb1-3 + View
Fragaria x ananassa FAN26G2434 PTHR15588//PTHR15588:SF10 - LSM1 // SUBFAMILY NOT NAMED Fvb1-2 - View
Fragaria x ananassa FAN14G3281 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Fvb6-1 - View
Fragaria x ananassa FAN26G2499 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Fvb1-2 + View
Fragaria x ananassa FAN28G2018 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Fvb1-1 - View
Fragaria vesca FvH4_1g09010 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Fvb1 + View
Fragaria vesca FvH4_6g35080 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Fvb6 + View
Gossypium hirsutum Gohir.D05G035800 PTHR15588//PTHR15588:SF10 - LSM1 // SUBFAMILY NOT NAMED D05 + View
Gossypium hirsutum Gohir.A06G078000 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) A06 + View
Gossypium hirsutum Gohir.A05G034400 PTHR15588//PTHR15588:SF10 - LSM1 // SUBFAMILY NOT NAMED A05 + View
Gossypium hirsutum Gohir.A05G139400 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) A05 - View
Gossypium hirsutum Gohir.A07G015600 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) A07 + View
Gossypium hirsutum Gohir.D07G015300 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) D07 + View
Gossypium hirsutum Gohir.D06G077000 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) D06 + View
Gossypium hirsutum Gohir.D05G141600 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) D05 - View
Glycine max Glyma.07G040900 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Gm07 + View
Glycine max Glyma.16G009500 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Gm16 + View
Gossypium raimondii Gorai.010G090100 Chr10 + View
Gossypium raimondii Gorai.001G016100 Chr01 + View
Gossypium raimondii Gorai.009G036400 Chr09 + View
Gossypium raimondii Gorai.009G145700 Chr09 - View
Helianthus annuus HanXRQChr09g0277061 Probable U6 snRNA-associated Sm-like protein LSm1 HanXRQChr09 + View
Lupinus albus Lalb_Chr11g0074161 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Lalb_Chr11 - View
Lupinus albus Lalb_Chr13g0299371 PTHR15588//PTHR15588:SF10 - LSM1 // SUBFAMILY NOT NAMED Lalb_Chr13 - View
Lupinus albus Lalb_Chr08g0232671 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Lalb_Chr08 + View
Lotus japonicus Lj3g0018911 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) chr3 + View
Lotus japonicus Lj6g0005211 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) chr6 - View
Magnolia biondii MBI19_g05293_MAGBIO AED:0.04 Chr19 + View
Malus domestica MD02G1095300 Small nuclear ribonucleoprotein family protein Chr02 + View
Manihot esculenta Manes.04G147400 Chromosome04 + View
Manihot esculenta Manes.11G017100 Chromosome11 - View
Medicago truncatula Medtr2g042700 small nuclear ribonucleoprotein chr2 + View
Medicago truncatula Medtr8g021250 small nuclear ribonucleoprotein chr8 + View
Nelumbo nucifera Nn6g35683 chr6 - View
Nelumbo nucifera Nn8g38590 chr8 - View
Nicotiana tabacum Nitab4.5_0004234g0020 Unknown Nitab4.5_0004234 + View
Nicotiana tabacum Nitab4.5_0000073g0290 Like-Sm (LSM) domain Nitab4.5_0000073 + View
Olea europaea Oeu011097.1 chr2 + View
Petunia axillaris Peaxi162Scf00928g00141 Small nuclear ribonucleoprotein family protein Peaxi162Scf00928 + View
Prunus persica Prupe.3G038200 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Pp03 - View
Prunus persica Prupe.7G195800 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Pp07 - View
Pisum sativum Psat4g167680 LSM domain chr4LG4 - View
Papaver somniferum PSO421G0525 NW_020619603.1 - View
Papaver somniferum PSO104G0101 NW_020625264.1 - View
Populus trichocarpa Potri.001G166600 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Chr01 - View
Phaseolus vulgaris Phvul.010G127800 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Chr10 - View
Quercus lobata QL11p001219 11 + View
Quercus lobata QL05p003868 5 - View
Rosa chinensis RcHm_v2.0_Chr2g0146261 RcHm_v2.0_Chr2 + View
Rosa chinensis RcHm_v2.0_Chr2g0095431 RcHm_v2.0_Chr2 + View
Salix brachista Sabra01G0126700 GWHAAZH00000001 + View
Simmondsia chinensis Sc08g0008960 GWHAASQ00000008 + View
Sechium edule Sed0000321 LG09 - View
Sechium edule Sed0026729 LG04 + View
Solanum lycopersicum Solyc12g009170.2 U6 snRNA-associated Sm-like protein LSm1 (AHRD V3.3 *** A0A2G2X437_CAPBA) SL4.0ch12 + View
Solanum lycopersicum Solyc03g122260.3 U6 snRNA-associated Sm-like protein LSm1 (AHRD V3.3 *** A0A1U8FUD8_CAPAN) SL4.0ch03 - View
Schrenkiella parvula Sp1g17040 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) ch1-1 + View
Solanum pennellii Sopen03g041000 Small nuclear ribonucleoprotein family protein | CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain , Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type , Like-Sm ribonucleoprotein (LSM)-related domain | BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein Spenn-ch03 - View
Solanum pennellii Sopen06g022430 Small nuclear ribonucleoprotein family protein | CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain , Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type , Like-Sm ribonucleoprotein (LSM)-related domain | BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein Spenn-ch06 + View
Solanum pennellii Sopen12g004120 Small nuclear ribonucleoprotein family protein | CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain , Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type , Like-Sm ribonucleoprotein (LSM)-related domain | BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein Spenn-ch12 + View
Solanum tuberosum PGSC0003DMG402022886 Lsm1 ST4.03ch03 - View
Selenicereus undatus Hund26075 Scaffold_2055 - View
Trochodendron aralioides TAR626G1464 group3 - View
Trochodendron aralioides TAR636G1157 group1 + View
Trochodendron aralioides TAR383G1015 group10 + View
Theobroma cacao Thecc.09G074300 Small nuclear ribonucleoprotein family protein Chromosome_9 - View
Theobroma cacao Thecc.06G123500 Small nuclear ribonucleoprotein family protein Chromosome_6 + View
Trifolium pratense TPR.G16754 Tp57577_TGAC_v2_LG6 - View
Tripterygium wilfordii TWI32G0925 NC_052254.1 + View
Tripterygium wilfordii TWI63G0187 NC_052240.1 - View
Tripterygium wilfordii TWI63G0253 NC_052240.1 + View
Vaccinium macrocarpon vmacro15047 Similar to LSM1B: Sm-like protein LSM1B (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro17123 Similar to LSM1B: Sm-like protein LSM1B (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0331G0908 CM024078.1 + View
Vitis vinifera GSVIVG01016726001 chr9 - View
Vitis vinifera GSVIVG01015051001 chr11 - View